Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq5412 289 3e-73 seq8546 197 2e-45 seq25216 154 2e-32 seq29420 147 3e-30 seq59 140 4e-28 seq8630 86.0 7e-12 seq4835 82.4 9e-11 >seq5412 Length=31808 Score = 289 bits (320), Expect = 3e-73 Identities = 479/692 (69%), Gaps = 6/692 (1%) Strand=Plus/Minus Query 169736 GGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTT 169795 |||| || || |||||||| || |||| | ||| || || ||||| | || | Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAACATCCGTATTTATTATAGCCT 15224 Query 169796 TCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCA 169855 |||| || ||||| || || || || ||||| || | |||||||| || || | Sbjct 15223 TCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTTC 15164 Query 169856 TGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCC 169915 | || || ||||| || ||||||||||| || ||| ||| || || ||| | | Sbjct 15163 TTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTGC 15104 Query 169916 ACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTT 169975 |||| ||||| || |||||||| ||| || | ||||| ||||| || || |||||||| | Sbjct 15103 ACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCAT 15044 Query 169976 ATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGG 170035 || | || || | || |||||| | | || | || ||||||||| | |||||| Sbjct 15043 ATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGG 14984 Query 170036 AACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGT 170095 |||| | |||| | |||||||| |||||||| ||| || ||||| || || || Sbjct 14983 AACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTTG 14924 Query 170096 CAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAA 170155 | | || ||||| ||||| | || || | ||| | ||| || || | || | Sbjct 14923 CGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGTA 14864 Query 170156 TGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACA 170215 |||||||||| || || ||||| || ||||||||| | |||||||| || |||||||||| Sbjct 14863 TGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACA 14804 Query 170216 TTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCT 170275 | |||||||||||||| || ||| ||| || |||||| | |||| || || ||| Sbjct 14803 TCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC- 14745 Query 170276 CAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGT 170335 | ||| ||||| | ||||| || | | ||||| || || ||||| || || | Sbjct 14744 -----AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAAT 14690 Query 170336 CACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCAC 170395 | || | || |||| | || ||||| ||||| || || || || || || || | Sbjct 14689 CTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCTC 14630 Query 170396 ATGGATACTTTGGTAGACTTATCTTCCAATAT 170427 |||| || ||||| || | |||||||||||| Sbjct 14629 ATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598 >seq8546 Length=31398 Score = 197 bits (218), Expect = 2e-45 Identities = 305/435 (70%), Gaps = 4/435 (1%) Strand=Plus/Minus Query 170233 CATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCA 170292 || ||| ||| || |||||| | ||||| || | | ||| | ||||| ||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 170293 CTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATAC 170352 | ||||| ||| | | ||||| || || ||||| || | || || | || ||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 170353 AAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGA 170412 | ||| || ||||| || ||||| | || ||||| || || ||||| || ||||| || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 170413 CTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACA 170472 | ||||||||||||||||| || ||| || || | | | || |||||| | | | | Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965 Query 170473 TTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTT 170532 | ||||||||| | || ||||| ||| | | |||||| | || |||||||||| ||| Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905 Query 170533 AATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGG 170592 || || || || |||||||| || | || ||| | ||| ||| || ||| Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATT----ATTGG 12849 Query 170593 GCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACAC 170652 || || || ||||| | || ||||| ||||||||||| |||||||| |||||||| || Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 12789 Query 170653 AACTTCCCACTTGAC 170667 ||||||| || ||| Sbjct 12788 AACTTCCATCTAGAC 12774 >seq25216 Length=8180 Score = 154 bits (170), Expect = 2e-32 Identities = 207/287 (72%), Gaps = 1/287 (0%) Strand=Plus/Minus Query 170050 TTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCT 170109 || |||||||| |||||||| | | || ||||| ||||| || | || || ||| Sbjct 7256 TTTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCT 7197 Query 170110 GTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATC 170169 || ||||| | || || | ||||| ||| || || || || ||||||||||| || Sbjct 7196 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 7137 Query 170170 TCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCA 170229 || ||||| || ||||||||| | |||||||| | ||||||||||| |||||||||||| Sbjct 7136 TCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCA 7077 Query 170230 TTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGT 170289 || || ||| ||| || | |||| | ||||| || | || ||| || ||||| ||| Sbjct 7076 TTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 7017 Query 170290 TCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTC 170336 || | ||||| || | | ||||| || || ||| | || || || Sbjct 7016 TCTTTGGTAACCTCGAGTTTGATCAG-GAAACCACATAAAATGAATC 6971 >seq29420 Length=7120 Score = 147 bits (162), Expect = 3e-30 Identities = 249/361 (69%), Gaps = 0/361 (0%) Strand=Plus/Plus Query 169804 GCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGT 169863 ||||| || || || || ||||| || | |||||||| | || || | | | || Sbjct 3416 GCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGGA 3475 Query 169864 AACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTAT 169923 ||||| || |||||||||| || |||| |||| || || ||| | ||||| ||| Sbjct 3476 AACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTAT 3535 Query 169924 CCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTA 169983 || || |||||||| ||| || | ||||| ||||| || || |||||||||||| | || Sbjct 3536 CCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTA 3595 Query 169984 GTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCA 170043 | | || |||||| | | || | || ||||||||| | |||||||||| Sbjct 3596 AATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGT 3655 Query 170044 TACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCA 170103 | |||| | |||||||| |||||||| ||| || ||||| | ||| || | || || Sbjct 3656 TTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGCT 3715 Query 170104 TTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTA 170163 || | ||||| | || || | ||||| ||| || || || || ||||||||| Sbjct 3716 ACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTA 3775 Query 170164 G 170164 | Sbjct 3776 G 3776 >seq59 Length=339703 Score = 140 bits (154), Expect = 4e-28 Identities = 185/257 (72%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 170143 TTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAA 170202 || || || || ||||||||||| | || ||||| || ||||||||| | |||||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 170203 GCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGA 170262 || ||||||||||| |||||||||||||| || ||| | | || |||||| | ||||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 170263 GGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACA 170322 || | || ||| | ||||| ||||| | ||||| || | | || || || || Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 170323 ACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAAC 170382 ||||| || || || || | || |||| || || ||||| ||||| || || || Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 170383 ATTGTTGCAGCACATGG 170399 ||||| || | ||||| Sbjct 52549 ATTGTAGCTACTCATGG 52565 >seq8630 Length=23577 Score = 86.0 bits (94), Expect = 7e-12 Identities = 90/117 (77%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 170347 GGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTT-GCAGCACATGGATACTT 170405 || |||||||| || ||||| || ||||| || || || || || || ||||| || || Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 170406 TGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTT 170462 |||| || | ||||||||||||||||| || |||||| |||| | | || ||||| Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTT 7613 >seq4835 Length=43218 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 170347 GGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTT 170406 || |||| ||| || ||||| || ||||| || || || || || || ||||| || ||| Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118 Query 170407 GGTAGACTTATCTTCCAATATGCTAGCTTTAACAA 170441 || ||| | ||||||||||||||||| || ||||| Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAA 9153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 580024145153600