Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_015290.1
Length=182180
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 289 3e-73
seq8546 197 2e-45
seq25216 154 2e-32
seq29420 147 3e-30
seq59 140 4e-28
seq8630 86.0 7e-12
seq4835 82.4 9e-11
>seq5412
Length=31808
Score = 289 bits (320), Expect = 3e-73
Identities = 479/692 (69%), Gaps = 6/692 (1%)
Strand=Plus/Minus
Query 169736 GGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTT 169795
|||| || || |||||||| || |||| | ||| || || ||||| | || |
Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAACATCCGTATTTATTATAGCCT 15224
Query 169796 TCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCA 169855
|||| || ||||| || || || || ||||| || | |||||||| || || |
Sbjct 15223 TCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTTC 15164
Query 169856 TGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCC 169915
| || || ||||| || ||||||||||| || ||| ||| || || ||| | |
Sbjct 15163 TTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTGC 15104
Query 169916 ACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTT 169975
|||| ||||| || |||||||| ||| || | ||||| ||||| || || |||||||| |
Sbjct 15103 ACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCAT 15044
Query 169976 ATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGG 170035
|| | || || | || |||||| | | || | || ||||||||| | ||||||
Sbjct 15043 ATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGG 14984
Query 170036 AACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGT 170095
|||| | |||| | |||||||| |||||||| ||| || ||||| || || ||
Sbjct 14983 AACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTTG 14924
Query 170096 CAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAA 170155
| | || ||||| ||||| | || || | ||| | ||| || || | || |
Sbjct 14923 CGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGTA 14864
Query 170156 TGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACA 170215
|||||||||| || || ||||| || ||||||||| | |||||||| || ||||||||||
Sbjct 14863 TGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACA 14804
Query 170216 TTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCT 170275
| |||||||||||||| || ||| ||| || |||||| | |||| || || |||
Sbjct 14803 TCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC- 14745
Query 170276 CAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGT 170335
| ||| ||||| | ||||| || | | ||||| || || ||||| || || |
Sbjct 14744 -----AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAAT 14690
Query 170336 CACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCAC 170395
| || | || |||| | || ||||| ||||| || || || || || || || |
Sbjct 14689 CTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCTC 14630
Query 170396 ATGGATACTTTGGTAGACTTATCTTCCAATAT 170427
|||| || ||||| || | ||||||||||||
Sbjct 14629 ATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598
>seq8546
Length=31398
Score = 197 bits (218), Expect = 2e-45
Identities = 305/435 (70%), Gaps = 4/435 (1%)
Strand=Plus/Minus
Query 170233 CATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCA 170292
|| ||| ||| || |||||| | ||||| || | | ||| | ||||| |||||
Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145
Query 170293 CTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATAC 170352
| ||||| ||| | | ||||| || || ||||| || | || || | || |||
Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085
Query 170353 AAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGA 170412
| ||| || ||||| || ||||| | || ||||| || || ||||| || ||||| ||
Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025
Query 170413 CTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACA 170472
| ||||||||||||||||| || ||| || || | | | || |||||| | | | |
Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965
Query 170473 TTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTT 170532
| ||||||||| | || ||||| ||| | | |||||| | || |||||||||| |||
Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905
Query 170533 AATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGG 170592
|| || || || |||||||| || | || ||| | ||| ||| || |||
Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATT----ATTGG 12849
Query 170593 GCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACAC 170652
|| || || ||||| | || ||||| ||||||||||| |||||||| |||||||| ||
Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 12789
Query 170653 AACTTCCCACTTGAC 170667
||||||| || |||
Sbjct 12788 AACTTCCATCTAGAC 12774
>seq25216
Length=8180
Score = 154 bits (170), Expect = 2e-32
Identities = 207/287 (72%), Gaps = 1/287 (0%)
Strand=Plus/Minus
Query 170050 TTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCT 170109
|| |||||||| |||||||| | | || ||||| ||||| || | || || |||
Sbjct 7256 TTTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCT 7197
Query 170110 GTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATC 170169
|| ||||| | || || | ||||| ||| || || || || ||||||||||| ||
Sbjct 7196 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 7137
Query 170170 TCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCA 170229
|| ||||| || ||||||||| | |||||||| | ||||||||||| ||||||||||||
Sbjct 7136 TCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCA 7077
Query 170230 TTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGT 170289
|| || ||| ||| || | |||| | ||||| || | || ||| || ||||| |||
Sbjct 7076 TTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 7017
Query 170290 TCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTC 170336
|| | ||||| || | | ||||| || || ||| | || || ||
Sbjct 7016 TCTTTGGTAACCTCGAGTTTGATCAG-GAAACCACATAAAATGAATC 6971
>seq29420
Length=7120
Score = 147 bits (162), Expect = 3e-30
Identities = 249/361 (69%), Gaps = 0/361 (0%)
Strand=Plus/Plus
Query 169804 GCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGT 169863
||||| || || || || ||||| || | |||||||| | || || | | | ||
Sbjct 3416 GCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGGA 3475
Query 169864 AACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTAT 169923
||||| || |||||||||| || |||| |||| || || ||| | ||||| |||
Sbjct 3476 AACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTAT 3535
Query 169924 CCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTA 169983
|| || |||||||| ||| || | ||||| ||||| || || |||||||||||| | ||
Sbjct 3536 CCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTA 3595
Query 169984 GTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCA 170043
| | || |||||| | | || | || ||||||||| | ||||||||||
Sbjct 3596 AATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGT 3655
Query 170044 TACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCA 170103
| |||| | |||||||| |||||||| ||| || ||||| | ||| || | || ||
Sbjct 3656 TTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGCT 3715
Query 170104 TTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTA 170163
|| | ||||| | || || | ||||| ||| || || || || |||||||||
Sbjct 3716 ACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTA 3775
Query 170164 G 170164
|
Sbjct 3776 G 3776
>seq59
Length=339703
Score = 140 bits (154), Expect = 4e-28
Identities = 185/257 (72%), Gaps = 0/257 (0%)
Strand=Plus/Plus
Query 170143 TTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAA 170202
|| || || || ||||||||||| | || ||||| || ||||||||| | ||||||||
Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368
Query 170203 GCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGA 170262
|| ||||||||||| |||||||||||||| || ||| | | || |||||| | |||||
Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428
Query 170263 GGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACA 170322
|| | || ||| | ||||| ||||| | ||||| || | | || || || ||
Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488
Query 170323 ACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAAC 170382
||||| || || || || | || |||| || || ||||| ||||| || || ||
Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548
Query 170383 ATTGTTGCAGCACATGG 170399
||||| || | |||||
Sbjct 52549 ATTGTAGCTACTCATGG 52565
>seq8630
Length=23577
Score = 86.0 bits (94), Expect = 7e-12
Identities = 90/117 (77%), Gaps = 1/117 (1%)
Strand=Plus/Plus
Query 170347 GGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTT-GCAGCACATGGATACTT 170405
|| |||||||| || ||||| || ||||| || || || || || || ||||| || ||
Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556
Query 170406 TGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTT 170462
|||| || | ||||||||||||||||| || |||||| |||| | | || |||||
Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTT 7613
>seq4835
Length=43218
Score = 82.4 bits (90), Expect = 9e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 170347 GGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTT 170406
|| |||| ||| || ||||| || ||||| || || || || || || ||||| || |||
Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118
Query 170407 GGTAGACTTATCTTCCAATATGCTAGCTTTAACAA 170441
|| ||| | ||||||||||||||||| || |||||
Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAA 9153
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 580024145153600
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