Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq4209 111 1e-19
seq87 104 2e-17
seq9434 102 5e-17
seq35801 96.9 2e-15
seq22012 91.5 1e-13
seq48644 89.7 3e-13
seq45117 89.7 3e-13
seq10588 89.7 3e-13
seq1982 82.4 5e-11
>seq4209
Length=73032
Score = 111 bits (122), Expect = 1e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||||||||| | |||| ||| |||| || ||||| || || |||||
Sbjct 43 TCCTTCTGGATGTTATAGTCAGCAAGGGTTCTACCATCCTCGAGCTGCTTGCCCGCAAAG 102
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || ||||||||| | || | ||| |||||||| ||||| |||||
Sbjct 103 ATGAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACATTG 162
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
|||| | || | |||||| || | ||||||||| ||||| || | || ||||||
Sbjct 163 TCTATGGTGTCTGAGCTCTCAACCTCTAGGGTTATGGTCTTTCCGGTCAATGTTTTCACA 222
Query 34971 AAGATCTGCAT 34981
|||||||||||
Sbjct 223 AAGATCTGCAT 233
>seq87
Length=177581
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||||||||| |||||||| || | |||| | | | |||| || || || || || |||||
Sbjct 55158 TTCTTTCTGGATGTTATAATCAGCAAGGGTCCTTCCATCTTCGAGTTGCTTGCCAGCAAA 55217
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| | || ||||||||| | || | |||||||| || |||||| |||||||
Sbjct 55218 GATCAATCTCTGCTGGTCTGGAGGAATTCCCTCCTTATCTTGAATCTTAGCTTTGACGTT 55277
Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
| || | ||| | |||||| || | || || || || || || | |||||||||
Sbjct 55278 GTCAATGGTGTCAGAGCTCTCAACTTCAAGAGTAATAGTCTTGCCAGTCAAAGTCTTCAC 55337
Query 34970 AAAGATCTGCAT 34981
||||||||||||
Sbjct 55338 AAAGATCTGCAT 55349
>seq9434
Length=50679
Score = 102 bits (112), Expect = 5e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| ||||||||||| || || || | |||| | | | |||| ||
Sbjct 45869 ACCAAGTGGAGGGTGGACTCTTTCTGAATATTGTAATCAGCAAGGGTCCTTCCATCCTCT 45928
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|| || ||||||||||| || |||| ||| ||||| | || | |||||||||||
Sbjct 45929 AGTTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCAGGGGGAATTCCCTCCTTGTCTTGG 45988
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| ||| ||| | || | ||| | ||||| |||| ||| || || ||
Sbjct 45989 ATCTTAGCTTTTACGTTGTCAATTGTGTCAGAGCTTTCAACCTCGAGGGTGATTGTCTTG 46048
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || || || ||||| |||||||||||
Sbjct 46049 CCTGTTAGGGTTTTCACGAAGATCTGCAT 46077
Score = 82.4 bits (90), Expect = 5e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| ||| ||||| |||||||| || | |||| | | | |||| ||
Sbjct 45641 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTATAATCTGCAAGGGTCCTTCCATCTTCA 45700
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|| || || |||||||| || | | ||||| ||| | || | ||||||||||| |
Sbjct 45701 AGTTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGA 45760
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| |||||| | || | || | ||| || || | || || || ||
Sbjct 45761 ATCTTAGCTTTGACATTGTCAATTGTGTCTGAGCTCTCGACTTCAAGTGTGATAGTCTTG 45820
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || || ||||| || || |||||||||
Sbjct 45821 CCAGTTAGGGTCTTTACGAATATCTGCATA 45850
>seq35801
Length=5147
Score = 96.9 bits (106), Expect = 2e-15
Identities = 153/214 (71%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||| | ||||| || ||| ||||||||||| || || | | | ||| |||| ||
Sbjct 339 AACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGCCAATGTCCGTCCATCCTC 280
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
||||| || || ||||| || | | ||||||||| |||| | ||||||||||||
Sbjct 279 GAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGCGGAATCCCCTCCTTGTCCTG 220
Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGG 34947
||||||| ||||| || |||| || | ||| || ||||| |||| ||| ||||
Sbjct 219 AATCTTCGCCTTGAC--AT--TATCTATGGTGTCCGAGCTTTCAACCTCGAGGGTGATGG 164
Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || || || | |||||| || || ||||||||
Sbjct 163 TCTTCCCTGTCAAAGTCTTGACGAATATCTGCAT 130
>seq22012
Length=9549
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/214 (71%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||| | ||||| || ||| ||||||||||| || || | | | ||| |||| ||
Sbjct 5858 AACAAGGTGAAGGGTTGATTCCTTCTGAATGTTGTAATCAGCCAATGTCCGTCCATCCTC 5917
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
||||| || || ||||| || | | ||||||||| |||| | ||||||||||||
Sbjct 5918 GAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGCGGAATCCCCTCCTTGTCCTG 5977
Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGG 34947
||||||| ||||| || |||| || | ||| || ||||| |||| ||| || |
Sbjct 5978 AATCTTCGCCTTGAC--AT--TATCTATGGTGTCCGAGCTTTCAACCTCGAGGGTGATAG 6033
Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || || || | |||||| || || ||||||||
Sbjct 6034 TCTTCCCTGTTAAAGTCTTAACGAATATCTGCAT 6067
>seq48644
Length=2856
Score = 89.7 bits (98), Expect = 3e-13
Identities = 141/200 (71%), Gaps = 8/200 (4%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| || |||||||| ||||| | ||| | || | || || |||||||| ||||| ||
Sbjct 1870 TCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAG 1929
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| | || | || |||||||| |||||| ||| || ||
Sbjct 1930 ATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTCGCTTTCAC--AT 1987
Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| ||||| || | ||||| || | |||||| || || || || || || ||
Sbjct 1988 --TGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTT 2045
Query 34967 CACAAAGATCTGCATATTCG 34986
||||||||||||||| ||||
Sbjct 2046 CACAAAGATCTGCATCTTCG 2065
>seq45117
Length=3449
Score = 89.7 bits (98), Expect = 3e-13
Identities = 141/200 (71%), Gaps = 8/200 (4%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| || |||||||| ||||| | ||| | || | || || |||||||| ||||| ||
Sbjct 2463 TCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAG 2522
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| | || | || |||||||| |||||| ||| || ||
Sbjct 2523 ATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTCGCTTTCAC--AT 2580
Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| ||||| || | ||||| || | |||||| || || || || || || ||
Sbjct 2581 --TGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTT 2638
Query 34967 CACAAAGATCTGCATATTCG 34986
||||||||||||||| ||||
Sbjct 2639 CACAAAGATCTGCATCTTCG 2658
>seq10588
Length=20159
Score = 89.7 bits (98), Expect = 3e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| || || || || | ||| ||| | |||| || ||||| ||||| |||||
Sbjct 1289 TCCTTCTGGATATTGTAATCAGCTAGGGTTCTTCCATCCTCGAGCTGCTTTCCAGCAAAG 1348
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || | |||||||| | || | ||||||||||| ||||| || |||
Sbjct 1349 ATAAGCCTCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTG 1408
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | |||||| || | ||| || || ||||| ||||| ||||| |||
Sbjct 1409 TCGATGGTGTCGGAGCTCTCAACCTCCAAGGTGATAGTCTTTCCAGTGAGCGTCTTGACA 1468
Query 34971 AAGATCTGCATA 34982
||||||||||||
Sbjct 1469 AAGATCTGCATA 1480
>seq1982
Length=56187
Score = 82.4 bits (90), Expect = 5e-11
Identities = 118/164 (72%), Gaps = 8/164 (5%)
Strand=Plus/Minus
Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886
|| || ||||| || ||||| || || ||||| |||||||| | || | |||||||||
Sbjct 32273 TCTTCGAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGTGGGATTCCCTCCTTG 32214
Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGT 34942
|| ||||| || || || | ||||| || || |||||| |||| |||
Sbjct 32213 TCCTGGATCTTGGCCTTCAC--AT--TGTCGATGGTGTCGGAGGACTCAACCTCGAGGGT 32158
Query 34943 TATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCG 34986
||| || || ||||| || || ||||| ||||||||||| ||||
Sbjct 32157 TATCGTCTTCCCCGTAAGGGTTTTCACGAAGATCTGCATCTTCG 32114
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323100095191632
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