Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq4209 111 1e-19 seq87 104 2e-17 seq9434 102 5e-17 seq35801 96.9 2e-15 seq22012 91.5 1e-13 seq48644 89.7 3e-13 seq45117 89.7 3e-13 seq10588 89.7 3e-13 seq1982 82.4 5e-11 >seq4209 Length=73032 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||||||||| | |||| ||| |||| || ||||| || || ||||| Sbjct 43 TCCTTCTGGATGTTATAGTCAGCAAGGGTTCTACCATCCTCGAGCTGCTTGCCCGCAAAG 102 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | ||| |||||||| ||||| ||||| Sbjct 103 ATGAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACATTG 162 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 |||| | || | |||||| || | ||||||||| ||||| || | || |||||| Sbjct 163 TCTATGGTGTCTGAGCTCTCAACCTCTAGGGTTATGGTCTTTCCGGTCAATGTTTTCACA 222 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 223 AAGATCTGCAT 233 >seq87 Length=177581 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| |||||||| || | |||| | | | |||| || || || || || ||||| Sbjct 55158 TTCTTTCTGGATGTTATAATCAGCAAGGGTCCTTCCATCTTCGAGTTGCTTGCCAGCAAA 55217 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || ||||||||| | || | |||||||| || |||||| ||||||| Sbjct 55218 GATCAATCTCTGCTGGTCTGGAGGAATTCCCTCCTTATCTTGAATCTTAGCTTTGACGTT 55277 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | ||| | |||||| || | || || || || || || | ||||||||| Sbjct 55278 GTCAATGGTGTCAGAGCTCTCAACTTCAAGAGTAATAGTCTTGCCAGTCAAAGTCTTCAC 55337 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 55338 AAAGATCTGCAT 55349 >seq9434 Length=50679 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||||||||||| || || || | |||| | | | |||| || Sbjct 45869 ACCAAGTGGAGGGTGGACTCTTTCTGAATATTGTAATCAGCAAGGGTCCTTCCATCCTCT 45928 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || ||||||||||| || |||| ||| ||||| | || | ||||||||||| Sbjct 45929 AGTTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCAGGGGGAATTCCCTCCTTGTCTTGG 45988 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||| ||| | || | ||| | ||||| |||| ||| || || || Sbjct 45989 ATCTTAGCTTTTACGTTGTCAATTGTGTCAGAGCTTTCAACCTCGAGGGTGATTGTCTTG 46048 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || ||||| ||||||||||| Sbjct 46049 CCTGTTAGGGTTTTCACGAAGATCTGCAT 46077 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||| ||||| |||||||| || | |||| | | | |||| || Sbjct 45641 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTATAATCTGCAAGGGTCCTTCCATCTTCA 45700 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || |||||||| || | | ||||| ||| | || | ||||||||||| | Sbjct 45701 AGTTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGA 45760 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | ||| || || | || || || || Sbjct 45761 ATCTTAGCTTTGACATTGTCAATTGTGTCTGAGCTCTCGACTTCAAGTGTGATAGTCTTG 45820 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||| || || ||||||||| Sbjct 45821 CCAGTTAGGGTCTTTACGAATATCTGCATA 45850 >seq35801 Length=5147 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| || ||| ||||||||||| || || | | | ||| |||| || Sbjct 339 AACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGCCAATGTCCGTCCATCCTC 280 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || ||||| || | | ||||||||| |||| | |||||||||||| Sbjct 279 GAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGCGGAATCCCCTCCTTGTCCTG 220 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGG 34947 ||||||| ||||| || |||| || | ||| || ||||| |||| ||| |||| Sbjct 219 AATCTTCGCCTTGAC--AT--TATCTATGGTGTCCGAGCTTTCAACCTCGAGGGTGATGG 164 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || | |||||| || || |||||||| Sbjct 163 TCTTCCCTGTCAAAGTCTTGACGAATATCTGCAT 130 >seq22012 Length=9549 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| || ||| ||||||||||| || || | | | ||| |||| || Sbjct 5858 AACAAGGTGAAGGGTTGATTCCTTCTGAATGTTGTAATCAGCCAATGTCCGTCCATCCTC 5917 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || ||||| || | | ||||||||| |||| | |||||||||||| Sbjct 5918 GAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGCGGAATCCCCTCCTTGTCCTG 5977 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGG 34947 ||||||| ||||| || |||| || | ||| || ||||| |||| ||| || | Sbjct 5978 AATCTTCGCCTTGAC--AT--TATCTATGGTGTCCGAGCTTTCAACCTCGAGGGTGATAG 6033 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || | |||||| || || |||||||| Sbjct 6034 TCTTCCCTGTTAAAGTCTTAACGAATATCTGCAT 6067 >seq48644 Length=2856 Score = 89.7 bits (98), Expect = 3e-13 Identities = 141/200 (71%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || |||||||| ||||| | ||| | || | || || |||||||| ||||| || Sbjct 1870 TCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAG 1929 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | || |||||||| |||||| ||| || || Sbjct 1930 ATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTCGCTTTCAC--AT 1987 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || | ||||| || | |||||| || || || || || || || Sbjct 1988 --TGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTT 2045 Query 34967 CACAAAGATCTGCATATTCG 34986 ||||||||||||||| |||| Sbjct 2046 CACAAAGATCTGCATCTTCG 2065 >seq45117 Length=3449 Score = 89.7 bits (98), Expect = 3e-13 Identities = 141/200 (71%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || |||||||| ||||| | ||| | || | || || |||||||| ||||| || Sbjct 2463 TCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAG 2522 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | || |||||||| |||||| ||| || || Sbjct 2523 ATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTCGCTTTCAC--AT 2580 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || | ||||| || | |||||| || || || || || || || Sbjct 2581 --TGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTT 2638 Query 34967 CACAAAGATCTGCATATTCG 34986 ||||||||||||||| |||| Sbjct 2639 CACAAAGATCTGCATCTTCG 2658 >seq10588 Length=20159 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || || || | ||| ||| | |||| || ||||| ||||| ||||| Sbjct 1289 TCCTTCTGGATATTGTAATCAGCTAGGGTTCTTCCATCCTCGAGCTGCTTTCCAGCAAAG 1348 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | ||||||||||| ||||| || ||| Sbjct 1349 ATAAGCCTCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTG 1408 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | |||||| || | ||| || || ||||| ||||| ||||| ||| Sbjct 1409 TCGATGGTGTCGGAGCTCTCAACCTCCAAGGTGATAGTCTTTCCAGTGAGCGTCTTGACA 1468 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 1469 AAGATCTGCATA 1480 >seq1982 Length=56187 Score = 82.4 bits (90), Expect = 5e-11 Identities = 118/164 (72%), Gaps = 8/164 (5%) Strand=Plus/Minus Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || ||||| || ||||| || || ||||| |||||||| | || | ||||||||| Sbjct 32273 TCTTCGAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGTGGGATTCCCTCCTTG 32214 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGT 34942 || ||||| || || || | ||||| || || |||||| |||| ||| Sbjct 32213 TCCTGGATCTTGGCCTTCAC--AT--TGTCGATGGTGTCGGAGGACTCAACCTCGAGGGT 32158 Query 34943 TATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCG 34986 ||| || || ||||| || || ||||| ||||||||||| |||| Sbjct 32157 TATCGTCTTCCCCGTAAGGGTTTTCACGAAGATCTGCATCTTCG 32114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323100095191632