Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq5412 383 2e-101 seq8546 260 2e-64 seq29420 208 9e-49 seq59 185 1e-41 seq25216 181 1e-40 seq8630 114 1e-20 seq4835 89.7 6e-13 seq13559 86.0 7e-12 seq8085 86.0 7e-12 >seq5412 Length=31808 Score = 383 bits (424), Expect = 2e-101 Identities = 502/693 (72%), Gaps = 8/693 (1%) Strand=Plus/Plus Query 84218 ATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTC 84277 ||| |||||||| | || || || || || |||||||| || ||||||||||| || || Sbjct 14598 ATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTCTCTTC 14657 Query 84278 TTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAG 84337 |||||||| | | ||||||| | || || |||||||||| ||||| | ||| | Sbjct 14658 CTCTTGACCAAGCCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 14717 Query 84338 AGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGC 84397 | || || || | ||||||||| | |||||| || ||||||||||||| Sbjct 14718 ACTCGAGGTTACCAAAGAACCATGCCT------GAATAGGTAGCCGTCGAATACACCAGC 14771 Query 84398 AACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCAT 84457 || || ||||||||||| || |||||||||||||| || || |||||||| |||| ||| Sbjct 14772 TACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCAT 14831 Query 84458 GTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAA 84517 | ||||||| || || || || || || ||||| |||| ||| || |||| || | Sbjct 14832 GAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATTAGAAAAGCTTCCTTAACCAAT 14891 Query 84518 AGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGAT 84577 || || | | ||| ||||||| || | ||||| || || || || |||||| || Sbjct 14892 TGGGTAGATCAAGAAAACAGCAGTAGCAGTCGCAACAGGGGCTGAATACGCAACAACAAT 14951 Query 84578 CCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGC 84637 ||| || |||||||| ||||| | ||||||||| ||||||||||||||| | | | Sbjct 14952 CCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTAC 15011 Query 84638 ACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTC 84697 ||||| | ||||||||| |||| || | ||| || |||||||| |||| |||||| || Sbjct 15012 ACCAAGTAAGAAGTGAAAAACAATTAGCTCATATGGACCACCATTGTATAACCATTCATC 15071 Query 84698 CATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAAC 84757 | | ||| |||||||| || ||||| || || | ||| |||||| | | | ||| Sbjct 15072 AACAGATGCAGCTTCCCATATTGGATAAAAGTGCAAACCTATAGCAGCAAAAGTCTGAAT 15131 Query 84758 TACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGAT 84817 | ||||||||| || || ||||||||||| | ||||| ||| || || ||||| || Sbjct 15132 AATGGCACCAGAGATAATATTGTTTCCGTAAAGAAGAGATCCAAAAACAGGTTCACGAAT 15191 Query 84818 ACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAG 84876 ||| |||||||| || || || ||| ||| ||| || || || || || || || || | Sbjct 15192 ACCATCAATATCTACCGGAGGAGCAGCAATGAAGGCTATAATAAATACGGA-TGTTGCGG 15250 Query 84877 CAAGTAGAGTTGGAATCATAAGAGTTCCAAACC 84909 | || || |||||||| | | ||||||| Sbjct 15251 TCAATAAGGTAGGAATCATCAAAACGCCAAACC 15283 >seq8546 Length=31398 Score = 260 bits (288), Expect = 2e-64 Identities = 314/427 (74%), Gaps = 4/427 (1%) Strand=Plus/Plus Query 83986 GGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGTA 84045 |||||||||| || |||||||| ||||| |||||||||||||| || || |||| | Sbjct 12782 GGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCGCGGTTAATAA 12841 Query 84046 CATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTAA 84105 ||||||||| ||| ||||| ||| ||||| || | | || ||||| || | Sbjct 12842 TATCGGCCCAATAATT----ACACGACCTTGACTATCAACTACAGATTGGTTGAAATTGA 12897 Query 84106 ATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCA 84165 | || || || |||||||||| || |||| ||| | || || |||||| || || || | Sbjct 12898 AGCCGTTTAGGATAAATGCCATAGTACTAATACCTAAAGTAGTAAACCATATACCTACTA 12957 Query 84166 CTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGA 84225 | ||||||||| | ||||| || || | |||| || || |||||| |||||| |||| Sbjct 12958 CAGGCCAAGCAACTAAGAAGAAATGTAAAGAATGAGAATCGTTGAAACTAGCATATTGGA 13017 Query 84226 AGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGAC 84285 |||| | || || || || || |||||||| |||||||| | ||||||||| ||||||| Sbjct 13018 AGATGAATCGGCCAAAATAACCATGAGCAGCTACAATATTCTTAGTTTCCTCCTCTTGAC 13077 Query 84286 CGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAG 84345 | || ||||||| | || || ||||||||| ||||| | ||| | | ||| | Sbjct 13078 CAAATCTGTAACCTTCATTAGCGGATTTATTTTCTGTGGTTTCCCTGATCAAACTAGAGG 13137 Query 84346 TGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCA 84405 | || | ||||||||||| || ||||| | || |||||||||||||| || || | Sbjct 13138 TTACCAAAGAACCATGCATAACACTGAATATGGAGCCGCCGAATACACCAGCTACGCCTA 13197 Query 84406 ACATGTG 84412 ||||||| Sbjct 13198 ACATGTG 13204 >seq29420 Length=7120 Score = 208 bits (230), Expect = 9e-49 Identities = 264/363 (73%), Gaps = 0/363 (0%) Strand=Plus/Minus Query 84483 AGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGAT 84542 || ||||| |||||||| || ||||| || | || || | | ||| | || || Sbjct 3774 AGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGTAGTA 3715 Query 84543 GCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATAT 84602 || || ||||| ||| | || || |||||| ||||| || |||||||| ||||| | Sbjct 3714 GCAGCCGCAACAGGAACTGAATACGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 3655 Query 84603 GAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACA 84662 ||||||||| ||||||||||||||| | | |||||| | |||||| || ||| Sbjct 3654 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGCAAAACATTT 3595 Query 84663 AGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGA 84722 || | |||||| |||||||| |||| |||||| || | | ||| |||||||| || ||| Sbjct 3594 AGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCATATTGGA 3535 Query 84723 TAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTT 84782 || || || | ||| |||||| ||| | |||| | | ||||||| || || |||||| Sbjct 3534 TAAAAGTGCAAACCTATAGCAGCAGAAGTCGGAATAATGTCACCAGAGATAATATTGTTT 3475 Query 84783 CCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCA 84842 |||| | ||||| |||| || || ||||| ||||| |||||||| || || || ||| Sbjct 3474 CCGTGAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGAGCA 3415 Query 84843 CCA 84845 || Sbjct 3414 ACA 3412 >seq59 Length=339703 Score = 185 bits (204), Expect = 1e-41 Identities = 195/257 (76%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 84246 CCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTT 84305 || |||| ||| |||||||||||||| || || |||||||| ||| ||||||| | || Sbjct 52565 CCATGAGTAGCTACAATATTATAAGTCTCTTCCTCTTGACCAAACCTGTAACCTTCATTA 52506 Query 84306 TGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATT 84365 || |||||||||| ||||| | || | | || || || | ||||||||||| Sbjct 52505 GTAGATTCATTTTCTGTGGTTTCCCTAATCAAACTCGAGGTTACCAAAGAACCATGCATA 52446 Query 84366 GCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATA 84425 || |||||| | || |||||||||||||| || | ||||||||||| || |||||| Sbjct 52445 ACACTGAATAGGGAGCCGCCGAATACACCAGCTACGCTTAACATGTGAAATGGGTGCATA 52386 Query 84426 AGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGT 84485 |||||||| || || || ||||| |||| |||| ||||||| || || || | || || Sbjct 52385 AGGATGTTGTGCTCAGCATGGAATACAATCATGAAGTTGAAAGTACCAGAAACTCCTAGA 52326 Query 84486 GGCATGCCATCAGAGAA 84502 ||||| |||||||| || Sbjct 52325 GGCATACCATCAGAAAA 52309 >seq25216 Length=8180 Score = 181 bits (200), Expect = 1e-40 Identities = 209/280 (75%), Gaps = 1/280 (0%) Strand=Plus/Plus Query 84313 CATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGA 84372 |||||| ||| ||||| | ||| | | || || || | ||||||||||| ||| || Sbjct 6975 CATTTTATGTGGTTTC-CTGATCAAACTCGAGGTTACCAAAGAACCATGCATAGCACTGA 7033 Query 84373 ATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGT 84432 |||| | || |||||||||||| | || || ||||||||||| || ||||||||||||| Sbjct 7034 ATAGGGAGCCGCCGAATACACCATCTACGCCTAACATGTGAAATGGGTGCATAAGGATGT 7093 Query 84433 TATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGC 84492 | || || | |||||| |||| |||| ||||||| || || || || || || ||||| | Sbjct 7094 TGTGCTCAGACTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATAC 7153 Query 84493 CATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAA 84552 ||||||| || ||||| || | || || | | ||| ||||||| || || |||| Sbjct 7154 CATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCCGCAA 7213 Query 84553 CTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACC 84592 | ||||| || || |||| | ||||| || |||||||| Sbjct 7214 CAGGAGCTGAATACGCAATAGCAATCCAAGGGCGCATACC 7253 >seq8630 Length=23577 Score = 114 bits (126), Expect = 1e-20 Identities = 127/168 (76%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 84168 GGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAG 84227 |||||||| || || || || || | ||||||| ||||||||| |||||| |||||| Sbjct 7628 GGCCAAGCGGCTAATAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAG 7569 Query 84228 ATAAGACGACCGAAGTAGCCGTGAGCAGCA-ACAATATTATAAGTTTCCTCTTCTTGACC 84286 || | ||||| || || || |||||||| || ||||| ||||||||||| |||||||| Sbjct 7568 ATGAATCGACCAAAATAACCATGAGCAGCGTACGATATTCTAAGTTTCCTCCTCTTGACC 7509 Query 84287 GAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGAT 84334 || |||||||| | || || |||||| ||| | ||| | ||| Sbjct 7508 AAATTTGTAACCTTCATTAGCGGATTCATTTTATGTGGGTTCCCTGAT 7461 >seq4835 Length=43218 Score = 89.7 bits (98), Expect = 6e-13 Identities = 101/135 (75%), Gaps = 4/135 (3%) Strand=Plus/Minus Query 84168 GGCCAAGCAGCCAAGAAAAAGTGGAG----AGAACGACTATTGTTGAAGGAAGCATACTG 84223 |||||||| || || || || || | ||||||| |||||||| |||||| || Sbjct 9193 GGCCAAGCGGCTAATAAGAAATGTAATTAAAGAACGAGATTTGTTGAAACTAGCATATTG 9134 Query 84224 GAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTG 84283 |||||| | | || || || || |||||||| || ||||| ||||||||||| ||||| Sbjct 9133 GAAGATGAATCTGCCAAAATAACCATGAGCAGCTACGATATTCTAAGTTTCCTCCTCTTG 9074 Query 84284 ACCGAACTTGTAACC 84298 ||| || ||||||| Sbjct 9073 ACCAAATCTGTAACC 9059 >seq13559 Length=16232 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 84235 GACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGT 84294 || |||| || || |||||||| || ||||| ||||||| ||| |||||||| || |||| Sbjct 5524 GATCGAAATAACCATGAGCAGCTACGATATTCTAAGTTTTCTCCTCTTGACCAAATTTGT 5583 Query 84295 AACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTG 84354 |||| | || | |||||||| | ||||| | ||| | ||| || || | | Sbjct 5584 AACCTTCATTAGCATATTCATTTTCTATGGTTTCCCTGATCAAGCTAGAGGTTACCAAAG 5643 Query 84355 AACCATGCATTGCAGAGAATAG 84376 |||||||||| ||| |||||| Sbjct 5644 AACCATGCATAGCACTGAATAG 5665 >seq8085 Length=24635 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 84707 TGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACC 84766 |||| |||| || ||||| || || | ||| |||||| ||| | |||| | || ||| Sbjct 19805 TGCTACCCACATTGGATAAAATTGCAAACCTATAGCAGCAGAAGTCGGAATAATGGAACC 19864 Query 84767 AGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAAT 84826 ||| | || ||||||||||| | ||||| |||| || || ||||||||||| ||||| Sbjct 19865 AGAGAAAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGGATACCATCAAT 19924 Query 84827 AT 84828 || Sbjct 19925 AT 19926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568505822253520