Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4197 87.8 2e-12 seq270 84.2 2e-11 >seq4197 Length=36674 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| || ||||| || || | || ||||| | ||||| || || || || |||| Sbjct 23419 ACAAGCGAAATCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAG 23478 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCAGAAAAGA 19078 |||||||||||||||| ||||||| ||| ||||| | ||| || |||||| |||| Sbjct 23479 TCCAGGCATCAGTCCTCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCAGAGAAGA 23537 Query 19079 ATATACCTTCTACTGCTGCAAAAGCAACTA 19108 | |||||||| || ||||||||||||| Sbjct 23538 AGATACCTTCAACGCAGGCAAAAGCAACTA 23567 >seq270 Length=105985 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 18955 ATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAAT 19014 |||||||| ||||||||||| |||| || |||||||| ||| | || || || || Sbjct 91786 ATCAAACAAGCAAAATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAG 91845 Query 19015 GTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCAGA 19073 || || || |||||||| || | |||||||| |||||||| | ||| || ||| || Sbjct 91846 GTCAATCCTGGCATCAGACCGCGTTTTTTTAGCCAGAATA-CGGCGCAGAAGCTTCCGGA 91904 Query 19074 AAAGAATATACCTTCTAC 19091 ||||| || ||||| || Sbjct 91905 GAAGAAGATGCCTTCCAC 91922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559385425022160