Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_016656.1
Length=45890
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 241 4e-59
seq8546 170 6e-38
seq59 134 4e-27
seq25216 123 7e-24
seq29420 111 5e-20
>seq5412
Length=31808
Score = 241 bits (266), Expect = 4e-59
Identities = 440/645 (68%), Gaps = 6/645 (1%)
Strand=Plus/Minus
Query 25895 TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 25954
||||| | |||||||| || || || || |||||||| ||||| || ||||| || |||
Sbjct 15236 TTTATTATAGCCTTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 15177
Query 25955 TCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAAC 26014
| || || | | |||||||||||||| || || || || | | | | | |
Sbjct 15176 TTTGGATCTCTTCTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCT 15117
Query 26015 GCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATAC 26074
|| || || | || ||||| || || |||||||||| | | || || ||| |||||
Sbjct 15116 GCTATAGGTTTGCACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATAC 15057
Query 26075 AATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCA 26134
||||| || |||||| | || ||| | || ||||||||| | || ||||| ||
Sbjct 15056 AATGGTGGTCCATATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATG 14997
Query 26135 GGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATAT 26194
|| | |||||||||| || | | || || ||| | || ||||| ||||||| |||
Sbjct 14996 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTAT 14937
Query 26195 ACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGT 26254
|||| || | | | ||| || || ||||| | || || | || |||| ||
Sbjct 14936 TCAGCCCCTGTTGCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGC 14877
Query 26255 TTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAA 26314
||| | |||| |||||||| || || ||||||||||| ||||| ||| | ||||||||
Sbjct 14876 TTTTCTAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 14817
Query 26315 GCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGT 26374
|| || || || || || ||||||||||| || ||| || || ||||| || ||||
Sbjct 14816 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGAC 14757
Query 26375 GGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACG 26434
|| || ||| | ||| || |||||| || || | || |||||
Sbjct 14756 GGCTACCTATTC------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACC 14703
Query 26435 ACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAAT 26494
||||| | | || ||| | || || | | |||| ||||| |||||||| ||||||
Sbjct 14702 ACAGAAAATGAATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAAT 14643
Query 26495 ATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTAT 26539
|| || ||||| || || || ||||| ||||||| || || |||
Sbjct 14642 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598
Score = 82.4 bits (90), Expect = 2e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 26654 AACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGATGTA 26713
|| || ||||| || ||||| ||| | | || |||| ||| ||||||||| |
Sbjct 14594 AATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATT 14535
Query 26714 TTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCA 26773
| ||||| ||||||| || | ||||||||||| || |||||||||| |||||| ||
Sbjct 14534 ATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCCCT 14475
Query 26774 CTTGACTTAGCATCA 26788
|| ||| ||||| ||
Sbjct 14474 CTCGACCTAGCAGCA 14460
>seq8546
Length=31398
Score = 170 bits (188), Expect = 6e-38
Identities = 229/317 (72%), Gaps = 4/317 (1%)
Strand=Plus/Minus
Query 26468 TTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTA 26527
||||| ||||| || || || | |||||||| ||||| || || || ||||| ||||
Sbjct 13081 TTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTC 13022
Query 26528 ATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGG 26587
|| || || ||||| ||||| || | | |||| | |||||||| | | | |||||
Sbjct 13021 ATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCTTGG 12962
Query 26588 CCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAAT 26647
|| || || || |||||| | || || | ||||| | || |||||||||| ||||||
Sbjct 12961 CCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTAAAC 12902
Query 26648 GGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCT 26707
|| || || || ||||| || ||||| ||| | | || |||| || |||||
Sbjct 12901 GGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAAT---TAT-TGGGCC 12846
Query 26708 GATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAAC 26767
||| | | ||||| |||||||| || | ||||||||||| || |||||||||||||||
Sbjct 12845 GATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAAC 12786
Query 26768 TTTCCACTTGACTTAGC 26784
|| | || ||| ||||
Sbjct 12785 TTCCATCTAGACCTAGC 12769
>seq59
Length=339703
Score = 134 bits (148), Expect = 4e-27
Identities = 181/252 (72%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 26260 TGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGA 26319
|||||| |||||||| || | ||||||||||| ||||| ||| | |||||||| || ||
Sbjct 52314 TGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCATGCTGA 52373
Query 26320 ACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGC 26379
|| || || || ||||||||||| || ||| | || ||||| || ||||| || |
Sbjct 52374 GCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGCGGCTC 52433
Query 26380 TCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGA 26439
|| ||| || |||||| || |||||| || || | ||| ||||| |||||
Sbjct 52434 CCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACCACAGA 52493
Query 26440 GGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGT 26499
| | || ||| | || || | |||||| ||||| |||||||| |||||||||||
Sbjct 52494 AAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAATATTGT 52553
Query 26500 CGCTGCACACGG 26511
||| | || ||
Sbjct 52554 AGCTACTCATGG 52565
>seq25216
Length=8180
Score = 123 bits (136), Expect = 7e-24
Identities = 178/251 (71%), Gaps = 0/251 (0%)
Strand=Plus/Minus
Query 26165 GGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTG 26224
|| ||| | || ||||| | |||| ||| |||| || | | || ||| || ||
Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194
Query 26225 TTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCT 26284
||||| | || || | || ||||| || ||| |||||| |||||||| || || |||
Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134
Query 26285 GGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTC 26344
|||||||| ||||| ||| | |||||||| | || || || || || |||||||||||
Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074
Query 26345 CATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGT 26404
|| ||| || || | ||| || ||||| || | || ||| ||||||||| || |
Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCT 7014
Query 26405 TTGGTTACTTC 26415
||||| || ||
Sbjct 7013 TTGGTAACCTC 7003
>seq29420
Length=7120
Score = 111 bits (122), Expect = 5e-20
Identities = 240/359 (67%), Gaps = 0/359 (0%)
Strand=Plus/Plus
Query 25916 GCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGA 25975
|| || || |||||||| ||||| || ||||| || ||||| || || | | |||||
Sbjct 3416 GCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGGA 3475
Query 25976 AACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTAC 26035
|||||||| || || || | | | || | ||| || || || | || |||||
Sbjct 3476 AACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTAT 3535
Query 26036 CCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTC 26095
|| || |||||||||| | | || || ||| |||||||||| || || ||| | ||
Sbjct 3536 CCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTA 3595
Query 26096 ATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCT 26155
| | | || ||||||||| | || ||||| || || | |||||||||| |
Sbjct 3596 AATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGT 3655
Query 26156 TACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCT 26215
| | | || || ||| | || ||||| |||||| ||| ||| || | | || |||
Sbjct 3656 TTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGCT 3715
Query 26216 CTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCT 26274
| | ||||| | || || | || ||||| || ||| |||||| ||||||||
Sbjct 3716 ACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146051065516656
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