Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq5412 241 4e-59 seq8546 170 6e-38 seq59 134 4e-27 seq25216 123 7e-24 seq29420 111 5e-20 >seq5412 Length=31808 Score = 241 bits (266), Expect = 4e-59 Identities = 440/645 (68%), Gaps = 6/645 (1%) Strand=Plus/Minus Query 25895 TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 25954 ||||| | |||||||| || || || || |||||||| ||||| || ||||| || ||| Sbjct 15236 TTTATTATAGCCTTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 15177 Query 25955 TCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAAC 26014 | || || | | |||||||||||||| || || || || | | | | | | Sbjct 15176 TTTGGATCTCTTCTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCT 15117 Query 26015 GCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATAC 26074 || || || | || ||||| || || |||||||||| | | || || ||| ||||| Sbjct 15116 GCTATAGGTTTGCACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATAC 15057 Query 26075 AATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCA 26134 ||||| || |||||| | || ||| | || ||||||||| | || ||||| || Sbjct 15056 AATGGTGGTCCATATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATG 14997 Query 26135 GGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATAT 26194 || | |||||||||| || | | || || ||| | || ||||| ||||||| ||| Sbjct 14996 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTAT 14937 Query 26195 ACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGT 26254 |||| || | | | ||| || || ||||| | || || | || |||| || Sbjct 14936 TCAGCCCCTGTTGCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGC 14877 Query 26255 TTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAA 26314 ||| | |||| |||||||| || || ||||||||||| ||||| ||| | |||||||| Sbjct 14876 TTTTCTAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 14817 Query 26315 GCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGT 26374 || || || || || || ||||||||||| || ||| || || ||||| || |||| Sbjct 14816 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGAC 14757 Query 26375 GGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACG 26434 || || ||| | ||| || |||||| || || | || ||||| Sbjct 14756 GGCTACCTATTC------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACC 14703 Query 26435 ACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAAT 26494 ||||| | | || ||| | || || | | |||| ||||| |||||||| |||||| Sbjct 14702 ACAGAAAATGAATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAAT 14643 Query 26495 ATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTAT 26539 || || ||||| || || || ||||| ||||||| || || ||| Sbjct 14642 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598 Score = 82.4 bits (90), Expect = 2e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 26654 AACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGATGTA 26713 || || ||||| || ||||| ||| | | || |||| ||| ||||||||| | Sbjct 14594 AATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATT 14535 Query 26714 TTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCA 26773 | ||||| ||||||| || | ||||||||||| || |||||||||| |||||| || Sbjct 14534 ATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCCCT 14475 Query 26774 CTTGACTTAGCATCA 26788 || ||| ||||| || Sbjct 14474 CTCGACCTAGCAGCA 14460 >seq8546 Length=31398 Score = 170 bits (188), Expect = 6e-38 Identities = 229/317 (72%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 26468 TTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTA 26527 ||||| ||||| || || || | |||||||| ||||| || || || ||||| |||| Sbjct 13081 TTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTC 13022 Query 26528 ATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGG 26587 || || || ||||| ||||| || | | |||| | |||||||| | | | ||||| Sbjct 13021 ATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCTTGG 12962 Query 26588 CCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAAT 26647 || || || || |||||| | || || | ||||| | || |||||||||| |||||| Sbjct 12961 CCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTAAAC 12902 Query 26648 GGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCT 26707 || || || || ||||| || ||||| ||| | | || |||| || ||||| Sbjct 12901 GGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAAT---TAT-TGGGCC 12846 Query 26708 GATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAAC 26767 ||| | | ||||| |||||||| || | ||||||||||| || ||||||||||||||| Sbjct 12845 GATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAAC 12786 Query 26768 TTTCCACTTGACTTAGC 26784 || | || ||| |||| Sbjct 12785 TTCCATCTAGACCTAGC 12769 >seq59 Length=339703 Score = 134 bits (148), Expect = 4e-27 Identities = 181/252 (72%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 26260 TGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGA 26319 |||||| |||||||| || | ||||||||||| ||||| ||| | |||||||| || || Sbjct 52314 TGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCATGCTGA 52373 Query 26320 ACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGC 26379 || || || || ||||||||||| || ||| | || ||||| || ||||| || | Sbjct 52374 GCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGCGGCTC 52433 Query 26380 TCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGA 26439 || ||| || |||||| || |||||| || || | ||| ||||| ||||| Sbjct 52434 CCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACCACAGA 52493 Query 26440 GGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGT 26499 | | || ||| | || || | |||||| ||||| |||||||| ||||||||||| Sbjct 52494 AAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAATATTGT 52553 Query 26500 CGCTGCACACGG 26511 ||| | || || Sbjct 52554 AGCTACTCATGG 52565 >seq25216 Length=8180 Score = 123 bits (136), Expect = 7e-24 Identities = 178/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 26165 GGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTG 26224 || ||| | || ||||| | |||| ||| |||| || | | || ||| || || Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194 Query 26225 TTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCT 26284 ||||| | || || | || ||||| || ||| |||||| |||||||| || || ||| Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134 Query 26285 GGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTC 26344 |||||||| ||||| ||| | |||||||| | || || || || || ||||||||||| Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074 Query 26345 CATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGT 26404 || ||| || || | ||| || ||||| || | || ||| ||||||||| || | Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCT 7014 Query 26405 TTGGTTACTTC 26415 ||||| || || Sbjct 7013 TTGGTAACCTC 7003 >seq29420 Length=7120 Score = 111 bits (122), Expect = 5e-20 Identities = 240/359 (67%), Gaps = 0/359 (0%) Strand=Plus/Plus Query 25916 GCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGA 25975 || || || |||||||| ||||| || ||||| || ||||| || || | | ||||| Sbjct 3416 GCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGGA 3475 Query 25976 AACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTAC 26035 |||||||| || || || | | | || | ||| || || || | || ||||| Sbjct 3476 AACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTAT 3535 Query 26036 CCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTC 26095 || || |||||||||| | | || || ||| |||||||||| || || ||| | || Sbjct 3536 CCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTA 3595 Query 26096 ATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCT 26155 | | | || ||||||||| | || ||||| || || | |||||||||| | Sbjct 3596 AATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGT 3655 Query 26156 TACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCT 26215 | | | || || ||| | || ||||| |||||| ||| ||| || | | || ||| Sbjct 3656 TTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGCT 3715 Query 26216 CTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCT 26274 | | ||||| | || || | || ||||| || ||| |||||| |||||||| Sbjct 3716 ACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146051065516656