Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq5412 325 1e-84 seq29420 205 3e-48 seq25216 174 5e-39 seq8546 170 6e-38 seq59 131 5e-26 seq8630 86.0 2e-12 >seq5412 Length=31808 Score = 325 bits (360), Expect = 1e-84 Identities = 487/692 (70%), Gaps = 6/692 (1%) Strand=Plus/Plus Query 36218 ATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTC 36277 ||| |||||||| | || ||||| || |||||||| || || || ||||| |||||||| Sbjct 14598 ATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTCTCTTC 14657 Query 36278 TTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAG 36337 ||||| || | | || || | || ||||||| | || ||||| | || | Sbjct 14658 CTCTTGACCAAGCCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 14717 Query 36338 TGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGC 36397 || || || | | || ||| | ||||| || ||||||| || || Sbjct 14718 ACTCGAGGTTACCAAAGAACCATGCCT------GAATAGGTAGCCGTCGAATACACCAGC 14771 Query 36398 AACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACAT 36457 || || | ||| || || || ||||||||||| ||||| || ||||| || |||| ||| Sbjct 14772 TACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCAT 14831 Query 36458 AAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAA 36517 || |||||||| || ||||| || ||||||||||||| ||| || || |||| |||| Sbjct 14832 GAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATTAGAAAAGCTTCCTTAACCAAT 14891 Query 36518 AGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATAT 36577 ||||||| ||||| |||||| || | ||||||||||||||||| || ||| || Sbjct 14892 TGGGTAGATCAAGAAAACAGCAGTAGCAGTCGCAACAGGGGCTGAATACGCAACAACAAT 14951 Query 36578 CCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGAT 36637 ||| || | |||||| || | ||||||||||||| | || |||| |||| | | Sbjct 14952 CCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTAC 15011 Query 36638 ACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTC 36697 ||||| | ||||| || ||||| || | |||||| || || || |||||||| || || Sbjct 15012 ACCAAGTAAGAAGTGAAAAACAATTAGCTCATATGGACCACCATTGTATAACCATTCATC 15071 Query 36698 GAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGAC 36757 | | |||||||||||| ||||| || ||||| | ||| || || | | | | Sbjct 15072 AACAGATGCAGCTTCCCATATTGGATAAAAGTGCAAACCTATAGCAGCAAAAGTCTGAAT 15131 Query 36758 GATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAAT 36817 || || |||||||| || |||||||| || || | | ||| | ||||| |||||||| Sbjct 15132 AATGGCACCAGAGATAATATTGTTTCCGTAAAGAAGAGATCCAAAAACAGGTTCACGAAT 15191 Query 36818 ACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGT 36877 |||||| ||||| || ||||| ||||||| || || || | |||| | | ||| || Sbjct 15192 ACCATCAATATCTACCGGAGGAGCAGCAATGAAGGCTATAATAAATACGGATGTTGCGGT 15251 Query 36878 TAAAAGTGCAGGGATCATTAGTACCCCAAACC 36909 || | | ||| ||||| | || ||||||| Sbjct 15252 CAATAAGGTAGGAATCATCAAAACGCCAAACC 15283 Score = 89.7 bits (98), Expect = 2e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 35970 GCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAG 36029 ||||||||||| || |||||||| | || ||||| ||||||||||||||||| || | | Sbjct 14461 GCTGCTAGGTCGAGAGGGAAGTTAGGAGCATTACGTTCATGCATAACTTCCATACCAAGG 14520 Query 36030 TCGGCACGGTTAAGAATGTCAGCCCAAGT 36058 | | ||||||| ||| ||||||||||| Sbjct 14521 TTAGTGCGGTTAATAATATCAGCCCAAGT 14549 >seq29420 Length=7120 Score = 205 bits (226), Expect = 3e-48 Identities = 263/363 (72%), Gaps = 0/363 (0%) Strand=Plus/Minus Query 36483 AGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAAT 36542 ||||||||||||||||| || || ||||| |||| ||||||| ||||| | || | Sbjct 3774 AGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGTAGTA 3715 Query 36543 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAA 36602 || || |||||||| ||||||| || ||| ||||| || | |||||| || | || Sbjct 3714 GCAGCCGCAACAGGAACTGAATACGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 3655 Query 36603 CTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATG 36662 ||||||||||| | || |||| |||| | | ||||| | ||||| || ||| | Sbjct 3654 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGCAAAACATTT 3595 Query 36663 AGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 36722 || | ||| || || || || |||||||| || || | | |||||||||||| ||||| Sbjct 3594 AGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCATATTGGA 3535 Query 36723 TAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTT 36782 || ||||| | ||| || || || | || | || | |||||||| || |||||| Sbjct 3534 TAAAAGTGCAAACCTATAGCAGCAGAAGTCGGAATAATGTCACCAGAGATAATATTGTTT 3475 Query 36783 CCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCA 36842 || | || | | ||| || ||||| |||||||||||||| ||||| || ||||| ||| Sbjct 3474 CCGTGAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGAGCA 3415 Query 36843 GCA 36845 || Sbjct 3414 ACA 3412 >seq25216 Length=8180 Score = 174 bits (192), Expect = 5e-39 Identities = 180/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 36416 || ||||||||| ||||| | || |||||||| || | || || | ||| || || Sbjct 7018 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCATCTACGCCTAACATGTGAAAT 7077 Query 36417 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 36476 || ||||||||||| ||||| || | ||| || |||| ||| || |||||||| || ||| Sbjct 7078 GGGTGCATAAGGATGTTGTGCTCAGACTGGAATACAATCATGAAGTTGAAAGTACCAGAA 7137 Query 36477 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 36536 || || ||||||||||||||||| || || ||||| |||| ||||||| ||||| ||| Sbjct 7138 ATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACA 7197 Query 36537 GCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACC 36592 ||| || || |||||||| |||||||| || | | ||||| || | |||||| Sbjct 7198 GCAGTAGCAGCCGCAACAGGAGCTGAATACGCAATAGCAATCCAAGGGCGCATACC 7253 >seq8546 Length=31398 Score = 170 bits (188), Expect = 6e-38 Identities = 238/331 (72%), Gaps = 6/331 (2%) Strand=Plus/Plus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || ||||||| || || ||||| ||||||||||||||||| || | Sbjct 12765 AGCAGCTAGGTCTAGATGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 12824 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGT-TGGGACGACTCTTCCGTTGGAATCAACGA 36087 || || ||||||| ||| || |||||| | ||||| ||| | |||||| | Sbjct 12825 GTTAGCGCGGTTAATAATATCGGCCCAATAATTACACGAC-CTTGACT----ATCAACTA 12879 Query 36088 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 36147 | || || ||||| || |||||||| || |||| |||||||| | || | || | Sbjct 12880 CAGATTGGTTGAAATTGAAGCCGTTTAGGATAAATGCCATAGTACTAATACCTAAAGTAG 12939 Query 36148 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTAT 36207 ||| |||||| | || ||||||||| | | ||||||||||||| | || | Sbjct 12940 TAAACCATATACCTACTACAGGCCAAGCAACTAAGAAGAAATGTAAAGAATGAGAATCGT 12999 Query 36208 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 36267 | || |||||||| |||||||||| || ||||| || |||||||| || ||||| || | Sbjct 13000 TGAAACTAGCATATTGGAAGATGAATCGGCCAAAATAACCATGAGCAGCTACAATATTCT 13059 Query 36268 ACGTCTCTTCTTCTTGGCCGAATTTATATCC 36298 || || || ||||| || ||| | || || Sbjct 13060 TAGTTTCCTCCTCTTGACCAAATCTGTAACC 13090 >seq59 Length=339703 Score = 131 bits (144), Expect = 5e-26 Identities = 183/257 (71%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 36246 CCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTC 36305 ||||||| || ||||| ||||| |||||||| ||||| || || | || || | || Sbjct 52565 CCATGAGTAGCTACAATATTATAAGTCTCTTCCTCTTGACCAAACCTGTAACCTTCATTA 52506 Query 36306 TGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATA 36365 ||||||| | || ||||| | ||| | || || || | | || |||||| Sbjct 52505 GTAGATTCATTTTCTGTGGTTTCCCTAATCAAACTCGAGGTTACCAAAGAACCATGCATA 52446 Query 36366 GCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATA 36425 || ||||| | || |||||||| || || || | | ||| || || || |||||| Sbjct 52445 ACACTGAATAGGGAGCCGCCGAATACACCAGCTACGCTTAACATGTGAAATGGGTGCATA 52386 Query 36426 AGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGA 36485 ||||| ||||| || || || || |||| ||| || |||||||| || |||| || ||| Sbjct 52385 AGGATGTTGTGCTCAGCATGGAATACAATCATGAAGTTGAAAGTACCAGAAACTCCTAGA 52326 Query 36486 GGCATACCATCAGAGAA 36502 |||||||||||||| || Sbjct 52325 GGCATACCATCAGAAAA 52309 >seq8630 Length=23577 Score = 86.0 bits (94), Expect = 2e-12 Identities = 99/132 (75%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 36168 GGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGGAAG 36227 |||||||| || | |||||||||||| || ||| || || |||||||| |||||| Sbjct 7628 GGCCAAGCGGCTAATAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAG 7569 Query 36228 ATGAGTCTCCCAAAGTAGCCATGAGCCGC-AACAATGTTATACGTCTCTTCTTCTTGGCC 36286 |||| || ||||| || |||||||| || || || || || || || || ||||| || Sbjct 7568 ATGAATCGACCAAAATAACCATGAGCAGCGTACGATATTCTAAGTTTCCTCCTCTTGACC 7509 Query 36287 GAATTTATATCC 36298 ||||| || || Sbjct 7508 AAATTTGTAACC 7497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149761906730276