Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_016657.1
Length=47055
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 325 1e-84
seq29420 205 3e-48
seq25216 174 5e-39
seq8546 170 6e-38
seq59 131 5e-26
seq8630 86.0 2e-12
>seq5412
Length=31808
Score = 325 bits (360), Expect = 1e-84
Identities = 487/692 (70%), Gaps = 6/692 (1%)
Strand=Plus/Plus
Query 36218 ATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTC 36277
||| |||||||| | || ||||| || |||||||| || || || ||||| ||||||||
Sbjct 14598 ATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTCTCTTC 14657
Query 36278 TTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAG 36337
||||| || | | || || | || ||||||| | || ||||| | || |
Sbjct 14658 CTCTTGACCAAGCCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 14717
Query 36338 TGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGC 36397
|| || || | | || ||| | ||||| || ||||||| || ||
Sbjct 14718 ACTCGAGGTTACCAAAGAACCATGCCT------GAATAGGTAGCCGTCGAATACACCAGC 14771
Query 36398 AACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACAT 36457
|| || | ||| || || || ||||||||||| ||||| || ||||| || |||| |||
Sbjct 14772 TACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCAT 14831
Query 36458 AAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAA 36517
|| |||||||| || ||||| || ||||||||||||| ||| || || |||| ||||
Sbjct 14832 GAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATTAGAAAAGCTTCCTTAACCAAT 14891
Query 36518 AGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATAT 36577
||||||| ||||| |||||| || | ||||||||||||||||| || ||| ||
Sbjct 14892 TGGGTAGATCAAGAAAACAGCAGTAGCAGTCGCAACAGGGGCTGAATACGCAACAACAAT 14951
Query 36578 CCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGAT 36637
||| || | |||||| || | ||||||||||||| | || |||| |||| | |
Sbjct 14952 CCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTAC 15011
Query 36638 ACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTC 36697
||||| | ||||| || ||||| || | |||||| || || || |||||||| || ||
Sbjct 15012 ACCAAGTAAGAAGTGAAAAACAATTAGCTCATATGGACCACCATTGTATAACCATTCATC 15071
Query 36698 GAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGAC 36757
| | |||||||||||| ||||| || ||||| | ||| || || | | | |
Sbjct 15072 AACAGATGCAGCTTCCCATATTGGATAAAAGTGCAAACCTATAGCAGCAAAAGTCTGAAT 15131
Query 36758 GATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAAT 36817
|| || |||||||| || |||||||| || || | | ||| | ||||| ||||||||
Sbjct 15132 AATGGCACCAGAGATAATATTGTTTCCGTAAAGAAGAGATCCAAAAACAGGTTCACGAAT 15191
Query 36818 ACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGT 36877
|||||| ||||| || ||||| ||||||| || || || | |||| | | ||| ||
Sbjct 15192 ACCATCAATATCTACCGGAGGAGCAGCAATGAAGGCTATAATAAATACGGATGTTGCGGT 15251
Query 36878 TAAAAGTGCAGGGATCATTAGTACCCCAAACC 36909
|| | | ||| ||||| | || |||||||
Sbjct 15252 CAATAAGGTAGGAATCATCAAAACGCCAAACC 15283
Score = 89.7 bits (98), Expect = 2e-13
Identities = 73/89 (82%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 35970 GCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAG 36029
||||||||||| || |||||||| | || ||||| ||||||||||||||||| || | |
Sbjct 14461 GCTGCTAGGTCGAGAGGGAAGTTAGGAGCATTACGTTCATGCATAACTTCCATACCAAGG 14520
Query 36030 TCGGCACGGTTAAGAATGTCAGCCCAAGT 36058
| | ||||||| ||| |||||||||||
Sbjct 14521 TTAGTGCGGTTAATAATATCAGCCCAAGT 14549
>seq29420
Length=7120
Score = 205 bits (226), Expect = 3e-48
Identities = 263/363 (72%), Gaps = 0/363 (0%)
Strand=Plus/Minus
Query 36483 AGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAAT 36542
||||||||||||||||| || || ||||| |||| ||||||| ||||| | || |
Sbjct 3774 AGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGTAGTA 3715
Query 36543 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAA 36602
|| || |||||||| ||||||| || ||| ||||| || | |||||| || | ||
Sbjct 3714 GCAGCCGCAACAGGAACTGAATACGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 3655
Query 36603 CTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATG 36662
||||||||||| | || |||| |||| | | ||||| | ||||| || ||| |
Sbjct 3654 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGCAAAACATTT 3595
Query 36663 AGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 36722
|| | ||| || || || || |||||||| || || | | |||||||||||| |||||
Sbjct 3594 AGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCATATTGGA 3535
Query 36723 TAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTT 36782
|| ||||| | ||| || || || | || | || | |||||||| || ||||||
Sbjct 3534 TAAAAGTGCAAACCTATAGCAGCAGAAGTCGGAATAATGTCACCAGAGATAATATTGTTT 3475
Query 36783 CCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCA 36842
|| | || | | ||| || ||||| |||||||||||||| ||||| || ||||| |||
Sbjct 3474 CCGTGAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGAGCA 3415
Query 36843 GCA 36845
||
Sbjct 3414 ACA 3412
>seq25216
Length=8180
Score = 174 bits (192), Expect = 5e-39
Identities = 180/236 (76%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 36416
|| ||||||||| ||||| | || |||||||| || | || || | ||| || ||
Sbjct 7018 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCATCTACGCCTAACATGTGAAAT 7077
Query 36417 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 36476
|| ||||||||||| ||||| || | ||| || |||| ||| || |||||||| || |||
Sbjct 7078 GGGTGCATAAGGATGTTGTGCTCAGACTGGAATACAATCATGAAGTTGAAAGTACCAGAA 7137
Query 36477 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 36536
|| || ||||||||||||||||| || || ||||| |||| ||||||| ||||| |||
Sbjct 7138 ATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACA 7197
Query 36537 GCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACC 36592
||| || || |||||||| |||||||| || | | ||||| || | ||||||
Sbjct 7198 GCAGTAGCAGCCGCAACAGGAGCTGAATACGCAATAGCAATCCAAGGGCGCATACC 7253
>seq8546
Length=31398
Score = 170 bits (188), Expect = 6e-38
Identities = 238/331 (72%), Gaps = 6/331 (2%)
Strand=Plus/Plus
Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028
||| |||||||| || ||||||| || || ||||| ||||||||||||||||| || |
Sbjct 12765 AGCAGCTAGGTCTAGATGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 12824
Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGT-TGGGACGACTCTTCCGTTGGAATCAACGA 36087
|| || ||||||| ||| || |||||| | ||||| ||| | |||||| |
Sbjct 12825 GTTAGCGCGGTTAATAATATCGGCCCAATAATTACACGAC-CTTGACT----ATCAACTA 12879
Query 36088 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 36147
| || || ||||| || |||||||| || |||| |||||||| | || | || |
Sbjct 12880 CAGATTGGTTGAAATTGAAGCCGTTTAGGATAAATGCCATAGTACTAATACCTAAAGTAG 12939
Query 36148 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTAT 36207
||| |||||| | || ||||||||| | | ||||||||||||| | || |
Sbjct 12940 TAAACCATATACCTACTACAGGCCAAGCAACTAAGAAGAAATGTAAAGAATGAGAATCGT 12999
Query 36208 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 36267
| || |||||||| |||||||||| || ||||| || |||||||| || ||||| || |
Sbjct 13000 TGAAACTAGCATATTGGAAGATGAATCGGCCAAAATAACCATGAGCAGCTACAATATTCT 13059
Query 36268 ACGTCTCTTCTTCTTGGCCGAATTTATATCC 36298
|| || || ||||| || ||| | || ||
Sbjct 13060 TAGTTTCCTCCTCTTGACCAAATCTGTAACC 13090
>seq59
Length=339703
Score = 131 bits (144), Expect = 5e-26
Identities = 183/257 (71%), Gaps = 0/257 (0%)
Strand=Plus/Minus
Query 36246 CCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTC 36305
||||||| || ||||| ||||| |||||||| ||||| || || | || || | ||
Sbjct 52565 CCATGAGTAGCTACAATATTATAAGTCTCTTCCTCTTGACCAAACCTGTAACCTTCATTA 52506
Query 36306 TGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATA 36365
||||||| | || ||||| | ||| | || || || | | || ||||||
Sbjct 52505 GTAGATTCATTTTCTGTGGTTTCCCTAATCAAACTCGAGGTTACCAAAGAACCATGCATA 52446
Query 36366 GCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATA 36425
|| ||||| | || |||||||| || || || | | ||| || || || ||||||
Sbjct 52445 ACACTGAATAGGGAGCCGCCGAATACACCAGCTACGCTTAACATGTGAAATGGGTGCATA 52386
Query 36426 AGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGA 36485
||||| ||||| || || || || |||| ||| || |||||||| || |||| || |||
Sbjct 52385 AGGATGTTGTGCTCAGCATGGAATACAATCATGAAGTTGAAAGTACCAGAAACTCCTAGA 52326
Query 36486 GGCATACCATCAGAGAA 36502
|||||||||||||| ||
Sbjct 52325 GGCATACCATCAGAAAA 52309
>seq8630
Length=23577
Score = 86.0 bits (94), Expect = 2e-12
Identities = 99/132 (75%), Gaps = 1/132 (1%)
Strand=Plus/Minus
Query 36168 GGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGGAAG 36227
|||||||| || | |||||||||||| || ||| || || |||||||| ||||||
Sbjct 7628 GGCCAAGCGGCTAATAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAG 7569
Query 36228 ATGAGTCTCCCAAAGTAGCCATGAGCCGC-AACAATGTTATACGTCTCTTCTTCTTGGCC 36286
|||| || ||||| || |||||||| || || || || || || || || ||||| ||
Sbjct 7568 ATGAATCGACCAAAATAACCATGAGCAGCGTACGATATTCTAAGTTTCCTCCTCTTGACC 7509
Query 36287 GAATTTATATCC 36298
||||| || ||
Sbjct 7508 AAATTTGTAACC 7497
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 149761906730276
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |