Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_016658.1
Length=47741
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 289 9e-74
seq8546 205 3e-48
seq25216 159 1e-34
seq29420 156 1e-33
seq59 131 5e-26
seq8630 100 9e-17
>seq5412
Length=31808
Score = 289 bits (320), Expect = 9e-74
Identities = 484/696 (70%), Gaps = 14/696 (2%)
Strand=Plus/Plus
Query 5440 ATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTC 5499
||| |||||||| | || ||||| || |||||||| || || || ||||| || |||||
Sbjct 14598 ATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTCTCTTC 14657
Query 5500 CTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAG 5559
|||||| || | | || || | || ||| | | || ||||| | |||
Sbjct 14658 CTCTTGACCAAGCCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCC---TGAT 14714
Query 5560 CGAA---GAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCC 5616
| || || || || | | |||||| | ||| | || ||||||| ||
Sbjct 14715 CAAACTCGAGGTTACCAAAGAACCATGCCT------GAATAGGTAGCCGTCGAATACACC 14768
Query 5617 AGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAA 5676
||| || || | |||||| || || ||||||||||| ||||| || ||||||||||| |
Sbjct 14769 AGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAAT 14828
Query 5677 CATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCC 5736
||| ||||| ||||||||||| || || ||||||||||||| | || ||||| | ||
Sbjct 14829 CATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATTAGAAAAGCTTCCTTAACC 14888
Query 5737 GAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGC 5795
| ||||| | || || || | |||| || | ||||| || |||||||| || ||
Sbjct 14889 AATTGGGTAGATCAAGAAAACAGCAGTA-GCAGTCGCAACAGGGGCTGAATACGCAACAA 14947
Query 5796 AAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTG 5855
|||||| || ||||| || | | | ||||||||||||| | || |||| |||| |
Sbjct 14948 CAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAG 15007
Query 5856 CGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATT 5915
| | ||||| | |||||| || || | || | ||||| || |||||||| | |||||
Sbjct 15008 CTACACCAAGTAAGAAGTGAAAAACAATTAGCTCATATGGACCACCATTGTATAACCATT 15067
Query 5916 CATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGG 5975
|||| | | || |||||||| || ||||| ||||| || || || || | |
Sbjct 15068 CATCAACAGATGCAGCTTCCCATATTGGATAAAAGTGCAAACCTATAGCAGCAAAAGTCT 15127
Query 5976 GTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCAC 6035
| | || ||| || || || || |||||||| || || |||||||| || |||||||
Sbjct 15128 GAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGAAGAGATCCAAAAACAGGTTCAC 15187
Query 6036 GTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTG 6095
| || || || || || || || || ||||| | ||| |||| |||||| | | ||||
Sbjct 15188 GAATACCATCAATATCTACCGGAGGAGCAGCAATGAAGGCTATAATAAATACGGATGTTG 15247
Query 6096 CGGTTAAGAGTGCGGGTATCATTAAGACACCAAACC 6131
|||| || | | || ||||| || || |||||||
Sbjct 15248 CGGTCAATAAGGTAGGAATCATCAAAACGCCAAACC 15283
Score = 89.7 bits (98), Expect = 2e-13
Identities = 73/89 (82%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 5192 GCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGG 5251
|||||||| || || |||||||| ||||||| ||||| ||||| |||||||||||||||
Sbjct 14461 GCTGCTAGGTCGAGAGGGAAGTTAGGAGCATTACGTTCATGCATAACTTCCATACCAAGG 14520
Query 5252 TTGGCACGGTTCAGGACATCTGCCCAAGT 5280
|| | ||||| | | ||| ||||||||
Sbjct 14521 TTAGTGCGGTTAATAATATCAGCCCAAGT 14549
>seq8546
Length=31398
Score = 205 bits (226), Expect = 3e-48
Identities = 312/444 (70%), Gaps = 4/444 (1%)
Strand=Plus/Plus
Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250
||| ||||| || || ||||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 12765 AGCAGCTAGGTCTAGATGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 12824
Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310
||| || ||||| | | ||| |||||| || | | ||| | ||||| ||
Sbjct 12825 GTTAGCGCGGTTAATAATATCGGCCCAAT----AATTACACGACCTTGACTATCAACTAC 12880
Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370
|| || ||||| || |||||||| || |||| |||||||| || || | || ||
Sbjct 12881 AGATTGGTTGAAATTGAAGCCGTTTAGGATAAATGCCATAGTACTAATACCTAAAGTAGT 12940
Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTT 5430
|| |||||| | || || ||||||| | | | ||||||||||||| | | || |||
Sbjct 12941 AAACCATATACCTACTACAGGCCAAGCAACTAAGAAGAAATGTAAAGAATGAGAATCGTT 13000
Query 5431 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 5490
|| |||||||| |||||||||| || ||||| || |||||||| || ||||| || |
Sbjct 13001 GAAACTAGCATATTGGAAGATGAATCGGCCAAAATAACCATGAGCAGCTACAATATTCTT 13060
Query 5491 CGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTC 5550
||||| |||||||| || ||| | || || | || || || | || |||||
Sbjct 13061 AGTTTCCTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTTATTTTCTGTGGTTTC 13120
Query 5551 ACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAA 5610
| || | ||| || || | | ||||||||| || ||| | | || |||||
Sbjct 13121 CCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAACACTGAATATGGAGCCGCCGAA 13180
Query 5611 TACCCCAGCAACACCGAGCATGTG 5634
||| ||||| || || | ||||||
Sbjct 13181 TACACCAGCTACGCCTAACATGTG 13204
>seq25216
Length=8180
Score = 159 bits (176), Expect = 1e-34
Identities = 181/240 (75%), Gaps = 2/240 (1%)
Strand=Plus/Plus
Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638
|||||||||||| ||| | | || |||||||| ||| | || || | |||||| ||
Sbjct 7018 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCATCTACGCCTAACATGTGAAAT 7077
Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAG 5698
|| ||||||||||| ||||| || | ||||||||| | ||| ||||| |||||||||||
Sbjct 7078 GGGTGCATAAGGATGTTGTGCTCAGACTGGAATACAATCATGAAGTTGAAAGTACCAGAA 7137
Query 5699 ATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACT 5758
|| || ||||||||||||||| || ||||| || || | ||||| | || || ||
Sbjct 7138 ATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACA 7197
Query 5759 G-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAA 5817
| |||| || || ||||| || |||||||| || | |||||| || ||||| || ||
Sbjct 7198 GCAGTA-GCAGCCGCAACAGGAGCTGAATACGCAATAGCAATCCAAGGGCGCATACCAAA 7256
>seq29420
Length=7120
Score = 156 bits (172), Expect = 1e-33
Identities = 254/362 (70%), Gaps = 4/362 (1%)
Strand=Plus/Minus
Query 5705 AGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAA--AAATACTGAGT 5762
||||||||||||||| || ||||| || || | ||||| | || ||||| | |||
Sbjct 3774 AGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGT-AGT 3716
Query 5763 AGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGT 5822
|| | || ||||| || ||||||| || || |||||| || ||||| || | | |
Sbjct 3715 AG-CAGCCGCAACAGGAACTGAATACGCAACAGCAATCCAAGGGCGCATACCCAGACGGA 3657
Query 5823 AACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGA 5882
||||||||||||| | || |||| |||| || | ||||| | |||||| || ||
Sbjct 3656 AACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGCAAAACAT 3597
Query 5883 CGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGG 5942
|| | || || || |||||||| | ||||||||| | | || |||||||| || |
Sbjct 3596 TTAGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCATATTG 3537
Query 5943 GATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGT 6002
|||| ||||| || || || || || | || | || | | || || || || ||||
Sbjct 3536 GATAAAAGTGCAAACCTATAGCAGCAGAAGTCGGAATAATGTCACCAGAGATAATATTGT 3477
Query 6003 TTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTG 6062
|||| | || |||||||| | || |||||||| || || || || || || || || |
Sbjct 3476 TTCCGTGAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGAG 3417
Query 6063 CA 6064
||
Sbjct 3416 CA 3415
>seq59
Length=339703
Score = 131 bits (144), Expect = 5e-26
Identities = 180/252 (71%), Gaps = 0/252 (0%)
Strand=Plus/Minus
Query 5468 CCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTC 5527
||||||| || ||||| ||||| || ||||||||||| || || | || || | ||
Sbjct 52565 CCATGAGTAGCTACAATATTATAAGTCTCTTCCTCTTGACCAAACCTGTAACCTTCATTA 52506
Query 5528 TGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATA 5587
||| | | || ||||| | ||| | || || || | | |||||||||
Sbjct 52505 GTAGATTCATTTTCTGTGGTTTCCCTAATCAAACTCGAGGTTACCAAAGAACCATGCATA 52446
Query 5588 GCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATA 5647
|| ||| | | || |||||||| ||||| || | | |||||| || || ||||||
Sbjct 52445 ACACTGAATAGGGAGCCGCCGAATACACCAGCTACGCTTAACATGTGAAATGGGTGCATA 52386
Query 5648 AGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGA 5707
||||| ||||| || || |||||||| | ||| ||||| ||||||||||| | || |||
Sbjct 52385 AGGATGTTGTGCTCAGCATGGAATACAATCATGAAGTTGAAAGTACCAGAAACTCCTAGA 52326
Query 5708 GGCATACCATCA 5719
||||||||||||
Sbjct 52325 GGCATACCATCA 52314
>seq8630
Length=23577
Score = 100 bits (110), Expect = 9e-17
Identities = 102/132 (77%), Gaps = 1/132 (1%)
Strand=Plus/Minus
Query 5390 GGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAG 5449
||||||| || | |||||||||||| ||| |||||| || |||||||| ||||||
Sbjct 7628 GGCCAAGCGGCTAATAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAG 7569
Query 5450 ATGAGTCTCCCAAAGTAGCCATGAGCCGC-AACAATGTTATACGTTTCTTCCTCTTGGCC 5508
|||| || ||||| || |||||||| || || || || || ||||| |||||||| ||
Sbjct 7568 ATGAATCGACCAAAATAACCATGAGCAGCGTACGATATTCTAAGTTTCCTCCTCTTGACC 7509
Query 5509 GAATTTATATCC 5520
||||| || ||
Sbjct 7508 AAATTTGTAACC 7497
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151947002929884
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |