Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq5412 289 9e-74 seq8546 205 3e-48 seq25216 159 1e-34 seq29420 156 1e-33 seq59 131 5e-26 seq8630 100 9e-17 >seq5412 Length=31808 Score = 289 bits (320), Expect = 9e-74 Identities = 484/696 (70%), Gaps = 14/696 (2%) Strand=Plus/Plus Query 5440 ATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTC 5499 ||| |||||||| | || ||||| || |||||||| || || || ||||| || ||||| Sbjct 14598 ATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTCTCTTC 14657 Query 5500 CTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAG 5559 |||||| || | | || || | || ||| | | || ||||| | ||| Sbjct 14658 CTCTTGACCAAGCCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCC---TGAT 14714 Query 5560 CGAA---GAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCC 5616 | || || || || | | |||||| | ||| | || ||||||| || Sbjct 14715 CAAACTCGAGGTTACCAAAGAACCATGCCT------GAATAGGTAGCCGTCGAATACACC 14768 Query 5617 AGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAA 5676 ||| || || | |||||| || || ||||||||||| ||||| || ||||||||||| | Sbjct 14769 AGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAAT 14828 Query 5677 CATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCC 5736 ||| ||||| ||||||||||| || || ||||||||||||| | || ||||| | || Sbjct 14829 CATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATTAGAAAAGCTTCCTTAACC 14888 Query 5737 GAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGC 5795 | ||||| | || || || | |||| || | ||||| || |||||||| || || Sbjct 14889 AATTGGGTAGATCAAGAAAACAGCAGTA-GCAGTCGCAACAGGGGCTGAATACGCAACAA 14947 Query 5796 AAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTG 5855 |||||| || ||||| || | | | ||||||||||||| | || |||| |||| | Sbjct 14948 CAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAG 15007 Query 5856 CGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATT 5915 | | ||||| | |||||| || || | || | ||||| || |||||||| | ||||| Sbjct 15008 CTACACCAAGTAAGAAGTGAAAAACAATTAGCTCATATGGACCACCATTGTATAACCATT 15067 Query 5916 CATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGG 5975 |||| | | || |||||||| || ||||| ||||| || || || || | | Sbjct 15068 CATCAACAGATGCAGCTTCCCATATTGGATAAAAGTGCAAACCTATAGCAGCAAAAGTCT 15127 Query 5976 GTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCAC 6035 | | || ||| || || || || |||||||| || || |||||||| || ||||||| Sbjct 15128 GAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGAAGAGATCCAAAAACAGGTTCAC 15187 Query 6036 GTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTG 6095 | || || || || || || || || ||||| | ||| |||| |||||| | | |||| Sbjct 15188 GAATACCATCAATATCTACCGGAGGAGCAGCAATGAAGGCTATAATAAATACGGATGTTG 15247 Query 6096 CGGTTAAGAGTGCGGGTATCATTAAGACACCAAACC 6131 |||| || | | || ||||| || || ||||||| Sbjct 15248 CGGTCAATAAGGTAGGAATCATCAAAACGCCAAACC 15283 Score = 89.7 bits (98), Expect = 2e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 5192 GCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGG 5251 |||||||| || || |||||||| ||||||| ||||| ||||| ||||||||||||||| Sbjct 14461 GCTGCTAGGTCGAGAGGGAAGTTAGGAGCATTACGTTCATGCATAACTTCCATACCAAGG 14520 Query 5252 TTGGCACGGTTCAGGACATCTGCCCAAGT 5280 || | ||||| | | ||| |||||||| Sbjct 14521 TTAGTGCGGTTAATAATATCAGCCCAAGT 14549 >seq8546 Length=31398 Score = 205 bits (226), Expect = 3e-48 Identities = 312/444 (70%), Gaps = 4/444 (1%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || ||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 12765 AGCAGCTAGGTCTAGATGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 12824 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 ||| || ||||| | | ||| |||||| || | | ||| | ||||| || Sbjct 12825 GTTAGCGCGGTTAATAATATCGGCCCAAT----AATTACACGACCTTGACTATCAACTAC 12880 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370 || || ||||| || |||||||| || |||| |||||||| || || | || || Sbjct 12881 AGATTGGTTGAAATTGAAGCCGTTTAGGATAAATGCCATAGTACTAATACCTAAAGTAGT 12940 Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTT 5430 || |||||| | || || ||||||| | | | ||||||||||||| | | || ||| Sbjct 12941 AAACCATATACCTACTACAGGCCAAGCAACTAAGAAGAAATGTAAAGAATGAGAATCGTT 13000 Query 5431 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 5490 || |||||||| |||||||||| || ||||| || |||||||| || ||||| || | Sbjct 13001 GAAACTAGCATATTGGAAGATGAATCGGCCAAAATAACCATGAGCAGCTACAATATTCTT 13060 Query 5491 CGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTC 5550 ||||| |||||||| || ||| | || || | || || || | || ||||| Sbjct 13061 AGTTTCCTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTTATTTTCTGTGGTTTC 13120 Query 5551 ACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAA 5610 | || | ||| || || | | ||||||||| || ||| | | || ||||| Sbjct 13121 CCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAACACTGAATATGGAGCCGCCGAA 13180 Query 5611 TACCCCAGCAACACCGAGCATGTG 5634 ||| ||||| || || | |||||| Sbjct 13181 TACACCAGCTACGCCTAACATGTG 13204 >seq25216 Length=8180 Score = 159 bits (176), Expect = 1e-34 Identities = 181/240 (75%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638 |||||||||||| ||| | | || |||||||| ||| | || || | |||||| || Sbjct 7018 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCATCTACGCCTAACATGTGAAAT 7077 Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAG 5698 || ||||||||||| ||||| || | ||||||||| | ||| ||||| ||||||||||| Sbjct 7078 GGGTGCATAAGGATGTTGTGCTCAGACTGGAATACAATCATGAAGTTGAAAGTACCAGAA 7137 Query 5699 ATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACT 5758 || || ||||||||||||||| || ||||| || || | ||||| | || || || Sbjct 7138 ATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACA 7197 Query 5759 G-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAA 5817 | |||| || || ||||| || |||||||| || | |||||| || ||||| || || Sbjct 7198 GCAGTA-GCAGCCGCAACAGGAGCTGAATACGCAATAGCAATCCAAGGGCGCATACCAAA 7256 >seq29420 Length=7120 Score = 156 bits (172), Expect = 1e-33 Identities = 254/362 (70%), Gaps = 4/362 (1%) Strand=Plus/Minus Query 5705 AGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAA--AAATACTGAGT 5762 ||||||||||||||| || ||||| || || | ||||| | || ||||| | ||| Sbjct 3774 AGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGT-AGT 3716 Query 5763 AGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGT 5822 || | || ||||| || ||||||| || || |||||| || ||||| || | | | Sbjct 3715 AG-CAGCCGCAACAGGAACTGAATACGCAACAGCAATCCAAGGGCGCATACCCAGACGGA 3657 Query 5823 AACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGA 5882 ||||||||||||| | || |||| |||| || | ||||| | |||||| || || Sbjct 3656 AACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGCAAAACAT 3597 Query 5883 CGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGG 5942 || | || || || |||||||| | ||||||||| | | || |||||||| || | Sbjct 3596 TTAGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCATATTG 3537 Query 5943 GATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGT 6002 |||| ||||| || || || || || | || | || | | || || || || |||| Sbjct 3536 GATAAAAGTGCAAACCTATAGCAGCAGAAGTCGGAATAATGTCACCAGAGATAATATTGT 3477 Query 6003 TTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTG 6062 |||| | || |||||||| | || |||||||| || || || || || || || || | Sbjct 3476 TTCCGTGAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGAG 3417 Query 6063 CA 6064 || Sbjct 3416 CA 3415 >seq59 Length=339703 Score = 131 bits (144), Expect = 5e-26 Identities = 180/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 5468 CCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTC 5527 ||||||| || ||||| ||||| || ||||||||||| || || | || || | || Sbjct 52565 CCATGAGTAGCTACAATATTATAAGTCTCTTCCTCTTGACCAAACCTGTAACCTTCATTA 52506 Query 5528 TGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATA 5587 ||| | | || ||||| | ||| | || || || | | ||||||||| Sbjct 52505 GTAGATTCATTTTCTGTGGTTTCCCTAATCAAACTCGAGGTTACCAAAGAACCATGCATA 52446 Query 5588 GCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATA 5647 || ||| | | || |||||||| ||||| || | | |||||| || || |||||| Sbjct 52445 ACACTGAATAGGGAGCCGCCGAATACACCAGCTACGCTTAACATGTGAAATGGGTGCATA 52386 Query 5648 AGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGA 5707 ||||| ||||| || || |||||||| | ||| ||||| ||||||||||| | || ||| Sbjct 52385 AGGATGTTGTGCTCAGCATGGAATACAATCATGAAGTTGAAAGTACCAGAAACTCCTAGA 52326 Query 5708 GGCATACCATCA 5719 |||||||||||| Sbjct 52325 GGCATACCATCA 52314 >seq8630 Length=23577 Score = 100 bits (110), Expect = 9e-17 Identities = 102/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 5390 GGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAG 5449 ||||||| || | |||||||||||| ||| |||||| || |||||||| |||||| Sbjct 7628 GGCCAAGCGGCTAATAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAG 7569 Query 5450 ATGAGTCTCCCAAAGTAGCCATGAGCCGC-AACAATGTTATACGTTTCTTCCTCTTGGCC 5508 |||| || ||||| || |||||||| || || || || || ||||| |||||||| || Sbjct 7568 ATGAATCGACCAAAATAACCATGAGCAGCGTACGATATTCTAAGTTTCCTCCTCTTGACC 7509 Query 5509 GAATTTATATCC 5520 ||||| || || Sbjct 7508 AAATTTGTAACC 7497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151947002929884