Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq5412 316 6e-82 seq29420 196 1e-45 seq8546 172 2e-38 seq25216 168 2e-37 seq59 131 5e-26 seq8630 91.5 4e-14 seq4835 80.6 8e-11 >seq5412 Length=31808 Score = 316 bits (350), Expect = 6e-82 Identities = 485/692 (70%), Gaps = 6/692 (1%) Strand=Plus/Plus Query 25698 ATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTC 25757 ||| |||||||| | || ||||| || |||||||| || || || ||||| |||||||| Sbjct 14598 ATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTCTCTTC 14657 Query 25758 TTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAG 25817 ||||| || | | || || | || ||||||| | || ||||| | || | Sbjct 14658 CTCTTGACCAAGCCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 14717 Query 25818 TGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGC 25877 || || || | | || ||| | ||||| || ||||||| || || Sbjct 14718 ACTCGAGGTTACCAAAGAACCATGCCT------GAATAGGTAGCCGTCGAATACACCAGC 14771 Query 25878 AACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACAT 25937 || || | ||| || || || ||||||||||| ||||| || ||||| || |||| ||| Sbjct 14772 TACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCAT 14831 Query 25938 AAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAA 25997 || |||||||| || ||||| || ||||||||||||| ||| || || |||| |||| Sbjct 14832 GAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATTAGAAAAGCTTCCTTAACCAAT 14891 Query 25998 AGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATAT 26057 ||||||| ||||| |||||| || | ||||||||||||||||| || ||| || Sbjct 14892 TGGGTAGATCAAGAAAACAGCAGTAGCAGTCGCAACAGGGGCTGAATACGCAACAACAAT 14951 Query 26058 CCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGAT 26117 ||| || | ||| || || | ||||||||||||| | || |||| |||| | | Sbjct 14952 CCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTAC 15011 Query 26118 GCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTC 26177 || | | ||||| || ||||| || | |||||| ||||| || || ||||| || || Sbjct 15012 ACCAAGTAAGAAGTGAAAAACAATTAGCTCATATGGACCACCATTGTATAACCATTCATC 15071 Query 26178 GAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGAC 26237 | | |||||||||||| ||||| || ||||| | ||| || || | | | | | | Sbjct 15072 AACAGATGCAGCTTCCCATATTGGATAAAAGTGCAAACCTATAGCAGCAAAAGTCTGAAT 15131 Query 26238 GATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAAT 26297 || || || ||||| || |||||||| || || | | ||| | ||||| |||||||| Sbjct 15132 AATGGCACCAGAGATAATATTGTTTCCGTAAAGAAGAGATCCAAAAACAGGTTCACGAAT 15191 Query 26298 ACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGT 26357 |||||| ||||| || ||||| ||||||| || || || | |||| | | ||| || Sbjct 15192 ACCATCAATATCTACCGGAGGAGCAGCAATGAAGGCTATAATAAATACGGATGTTGCGGT 15251 Query 26358 TAAAAGTGCAGGGATCATTAGTACCCCAAACC 26389 || | | ||| ||||| | || ||||||| Sbjct 15252 CAATAAGGTAGGAATCATCAAAACGCCAAACC 15283 Score = 86.0 bits (94), Expect = 2e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 25452 TGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTC 25511 ||||| ||| ||||||||||| | || ||||| ||||||||||||||||| || | || Sbjct 14463 TGCTAGGTCGAGAGGGAAGTTAGGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 14522 Query 25512 GGCACGGTTAAGAATGTCAGCCCAAGT 25538 | ||||||| ||| ||||||||||| Sbjct 14523 AGTGCGGTTAATAATATCAGCCCAAGT 14549 >seq29420 Length=7120 Score = 196 bits (216), Expect = 1e-45 Identities = 261/363 (72%), Gaps = 0/363 (0%) Strand=Plus/Minus Query 25963 AGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAAT 26022 ||||||||||||||||| || || ||||| |||| ||||||| ||||| | || | Sbjct 3774 AGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGTAGTA 3715 Query 26023 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAA 26082 || || |||||||| ||||||| || ||| ||||| || | ||| || || | || Sbjct 3714 GCAGCCGCAACAGGAACTGAATACGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 3655 Query 26083 CTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATA 26142 ||||||||||| | || |||| |||| | | || | | ||||| || ||| | Sbjct 3654 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGCAAAACATTT 3595 Query 26143 AGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 26202 || | ||| || ||||| || || ||||| || || | | |||||||||||| ||||| Sbjct 3594 AGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCATATTGGA 3535 Query 26203 TAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTT 26262 || ||||| | ||| || || ||| | ||| | || | || ||||| || |||||| Sbjct 3534 TAAAAGTGCAAACCTATAGCAGCAGAAGTCGGAATAATGTCACCAGAGATAATATTGTTT 3475 Query 26263 CCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCA 26322 || | || | | ||| || ||||| |||||||||||||| ||||| || ||||| ||| Sbjct 3474 CCGTGAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGAGCA 3415 Query 26323 GCA 26325 || Sbjct 3414 ACA 3412 >seq8546 Length=31398 Score = 172 bits (190), Expect = 2e-38 Identities = 236/327 (72%), Gaps = 6/327 (2%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||| ||||||| || || ||||| ||||||||||||||||| || | || Sbjct 12769 GCTAGGTCTAGATGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 12828 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGT-TGGGACGACTCTTCCGTTGGAATCAACGACTGA 25571 || ||||||| ||| || |||||| | ||||| ||| | |||||| || || Sbjct 12829 GCGCGGTTAATAATATCGGCCCAATAATTACACGAC-CTTGACT----ATCAACTACAGA 12883 Query 25572 CTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAG 25631 || ||||| || |||||||| || |||| |||||||| | || | || |||| Sbjct 12884 TTGGTTGAAATTGAAGCCGTTTAGGATAAATGCCATAGTACTAATACCTAAAGTAGTAAA 12943 Query 25632 CCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAA 25691 |||||| | || ||||||||| | | ||||||||||||| | | || || || Sbjct 12944 CCATATACCTACTACAGGCCAAGCAACTAAGAAGAAATGTAAAGAATGAGAATCGTTGAA 13003 Query 25692 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGT 25751 |||||||| |||||||||| || ||||| || |||||||| || ||||| || | || Sbjct 13004 ACTAGCATATTGGAAGATGAATCGGCCAAAATAACCATGAGCAGCTACAATATTCTTAGT 13063 Query 25752 CTCTTCTTCTTGGCCGAATTTATATCC 25778 || || ||||| || ||| | || || Sbjct 13064 TTCCTCCTCTTGACCAAATCTGTAACC 13090 >seq25216 Length=8180 Score = 168 bits (186), Expect = 2e-37 Identities = 179/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 25896 || ||||||||| ||||| | || |||||||| || | || || | ||| || || Sbjct 7018 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCATCTACGCCTAACATGTGAAAT 7077 Query 25897 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 25956 || ||||||||||| ||||| || | ||| || |||| ||| || |||||||| || ||| Sbjct 7078 GGGTGCATAAGGATGTTGTGCTCAGACTGGAATACAATCATGAAGTTGAAAGTACCAGAA 7137 Query 25957 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 26016 || || ||||||||||||||||| || || ||||| |||| ||||||| ||||| ||| Sbjct 7138 ATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACA 7197 Query 26017 GCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCC 26072 ||| || || |||||||| |||||||| || | | ||||| || | ||| || Sbjct 7198 GCAGTAGCAGCCGCAACAGGAGCTGAATACGCAATAGCAATCCAAGGGCGCATACC 7253 >seq59 Length=339703 Score = 131 bits (144), Expect = 5e-26 Identities = 183/257 (71%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 25726 CCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTC 25785 ||||||| || ||||| ||||| |||||||| ||||| || || | || || | || Sbjct 52565 CCATGAGTAGCTACAATATTATAAGTCTCTTCCTCTTGACCAAACCTGTAACCTTCATTA 52506 Query 25786 TGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATA 25845 ||||||| | || ||||| | ||| | || || || | | || |||||| Sbjct 52505 GTAGATTCATTTTCTGTGGTTTCCCTAATCAAACTCGAGGTTACCAAAGAACCATGCATA 52446 Query 25846 GCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATA 25905 || ||||| | || |||||||| || || || | | ||| || || || |||||| Sbjct 52445 ACACTGAATAGGGAGCCGCCGAATACACCAGCTACGCTTAACATGTGAAATGGGTGCATA 52386 Query 25906 AGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGA 25965 ||||| ||||| || || || || |||| ||| || |||||||| || |||| || ||| Sbjct 52385 AGGATGTTGTGCTCAGCATGGAATACAATCATGAAGTTGAAAGTACCAGAAACTCCTAGA 52326 Query 25966 GGCATACCATCAGAGAA 25982 |||||||||||||| || Sbjct 52325 GGCATACCATCAGAAAA 52309 >seq8630 Length=23577 Score = 91.5 bits (100), Expect = 4e-14 Identities = 100/132 (76%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 25648 GGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGGAAG 25707 |||||||| || | |||||||||||| ||| ||| || || |||||||| |||||| Sbjct 7628 GGCCAAGCGGCTAATAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAG 7569 Query 25708 ATGAGTCTCCCAAAGTAGCCATGAGCCGC-AACAATGTTATACGTCTCTTCTTCTTGGCC 25766 |||| || ||||| || |||||||| || || || || || || || || ||||| || Sbjct 7568 ATGAATCGACCAAAATAACCATGAGCAGCGTACGATATTCTAAGTTTCCTCCTCTTGACC 7509 Query 25767 GAATTTATATCC 25778 ||||| || || Sbjct 7508 AAATTTGTAACC 7497 >seq4835 Length=43218 Score = 80.6 bits (88), Expect = 8e-11 Identities = 99/135 (73%), Gaps = 4/135 (3%) Strand=Plus/Minus Query 25648 GGCCAAGCAGCCAGGAAGAAATG----TAAACTACGGCTATTATTAAAGCTAGCATACTG 25703 |||||||| || | |||||||| |||| ||| || || || |||||||| || Sbjct 9193 GGCCAAGCGGCTAATAAGAAATGTAATTAAAGAACGAGATTTGTTGAAACTAGCATATTG 9134 Query 25704 GAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTG 25763 |||||||| ||| ||||| || |||||||| || || || || || || || || ||||| Sbjct 9133 GAAGATGAATCTGCCAAAATAACCATGAGCAGCTACGATATTCTAAGTTTCCTCCTCTTG 9074 Query 25764 GCCGAATTTATATCC 25778 || ||| | || || Sbjct 9073 ACCAAATCTGTAACC 9059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151294022287144