Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_016659.1
Length=47536
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 316 6e-82
seq29420 196 1e-45
seq8546 172 2e-38
seq25216 168 2e-37
seq59 131 5e-26
seq8630 91.5 4e-14
seq4835 80.6 8e-11
>seq5412
Length=31808
Score = 316 bits (350), Expect = 6e-82
Identities = 485/692 (70%), Gaps = 6/692 (1%)
Strand=Plus/Plus
Query 25698 ATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTC 25757
||| |||||||| | || ||||| || |||||||| || || || ||||| ||||||||
Sbjct 14598 ATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTCTCTTC 14657
Query 25758 TTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAG 25817
||||| || | | || || | || ||||||| | || ||||| | || |
Sbjct 14658 CTCTTGACCAAGCCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 14717
Query 25818 TGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGC 25877
|| || || | | || ||| | ||||| || ||||||| || ||
Sbjct 14718 ACTCGAGGTTACCAAAGAACCATGCCT------GAATAGGTAGCCGTCGAATACACCAGC 14771
Query 25878 AACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACAT 25937
|| || | ||| || || || ||||||||||| ||||| || ||||| || |||| |||
Sbjct 14772 TACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCAT 14831
Query 25938 AAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAA 25997
|| |||||||| || ||||| || ||||||||||||| ||| || || |||| ||||
Sbjct 14832 GAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATTAGAAAAGCTTCCTTAACCAAT 14891
Query 25998 AGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATAT 26057
||||||| ||||| |||||| || | ||||||||||||||||| || ||| ||
Sbjct 14892 TGGGTAGATCAAGAAAACAGCAGTAGCAGTCGCAACAGGGGCTGAATACGCAACAACAAT 14951
Query 26058 CCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGAT 26117
||| || | ||| || || | ||||||||||||| | || |||| |||| | |
Sbjct 14952 CCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTAC 15011
Query 26118 GCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTC 26177
|| | | ||||| || ||||| || | |||||| ||||| || || ||||| || ||
Sbjct 15012 ACCAAGTAAGAAGTGAAAAACAATTAGCTCATATGGACCACCATTGTATAACCATTCATC 15071
Query 26178 GAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGAC 26237
| | |||||||||||| ||||| || ||||| | ||| || || | | | | | |
Sbjct 15072 AACAGATGCAGCTTCCCATATTGGATAAAAGTGCAAACCTATAGCAGCAAAAGTCTGAAT 15131
Query 26238 GATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAAT 26297
|| || || ||||| || |||||||| || || | | ||| | ||||| ||||||||
Sbjct 15132 AATGGCACCAGAGATAATATTGTTTCCGTAAAGAAGAGATCCAAAAACAGGTTCACGAAT 15191
Query 26298 ACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGT 26357
|||||| ||||| || ||||| ||||||| || || || | |||| | | ||| ||
Sbjct 15192 ACCATCAATATCTACCGGAGGAGCAGCAATGAAGGCTATAATAAATACGGATGTTGCGGT 15251
Query 26358 TAAAAGTGCAGGGATCATTAGTACCCCAAACC 26389
|| | | ||| ||||| | || |||||||
Sbjct 15252 CAATAAGGTAGGAATCATCAAAACGCCAAACC 15283
Score = 86.0 bits (94), Expect = 2e-12
Identities = 71/87 (82%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 25452 TGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTC 25511
||||| ||| ||||||||||| | || ||||| ||||||||||||||||| || | ||
Sbjct 14463 TGCTAGGTCGAGAGGGAAGTTAGGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 14522
Query 25512 GGCACGGTTAAGAATGTCAGCCCAAGT 25538
| ||||||| ||| |||||||||||
Sbjct 14523 AGTGCGGTTAATAATATCAGCCCAAGT 14549
>seq29420
Length=7120
Score = 196 bits (216), Expect = 1e-45
Identities = 261/363 (72%), Gaps = 0/363 (0%)
Strand=Plus/Minus
Query 25963 AGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAAT 26022
||||||||||||||||| || || ||||| |||| ||||||| ||||| | || |
Sbjct 3774 AGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGTAGTA 3715
Query 26023 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAA 26082
|| || |||||||| ||||||| || ||| ||||| || | ||| || || | ||
Sbjct 3714 GCAGCCGCAACAGGAACTGAATACGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 3655
Query 26083 CTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATA 26142
||||||||||| | || |||| |||| | | || | | ||||| || ||| |
Sbjct 3654 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGCAAAACATTT 3595
Query 26143 AGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 26202
|| | ||| || ||||| || || ||||| || || | | |||||||||||| |||||
Sbjct 3594 AGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCATATTGGA 3535
Query 26203 TAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTT 26262
|| ||||| | ||| || || ||| | ||| | || | || ||||| || ||||||
Sbjct 3534 TAAAAGTGCAAACCTATAGCAGCAGAAGTCGGAATAATGTCACCAGAGATAATATTGTTT 3475
Query 26263 CCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCA 26322
|| | || | | ||| || ||||| |||||||||||||| ||||| || ||||| |||
Sbjct 3474 CCGTGAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGAGCA 3415
Query 26323 GCA 26325
||
Sbjct 3414 ACA 3412
>seq8546
Length=31398
Score = 172 bits (190), Expect = 2e-38
Identities = 236/327 (72%), Gaps = 6/327 (2%)
Strand=Plus/Plus
Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512
|||| ||| ||| ||||||| || || ||||| ||||||||||||||||| || | ||
Sbjct 12769 GCTAGGTCTAGATGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 12828
Query 25513 GCACGGTTAAGAATGTCAGCCCAAGT-TGGGACGACTCTTCCGTTGGAATCAACGACTGA 25571
|| ||||||| ||| || |||||| | ||||| ||| | |||||| || ||
Sbjct 12829 GCGCGGTTAATAATATCGGCCCAATAATTACACGAC-CTTGACT----ATCAACTACAGA 12883
Query 25572 CTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAG 25631
|| ||||| || |||||||| || |||| |||||||| | || | || ||||
Sbjct 12884 TTGGTTGAAATTGAAGCCGTTTAGGATAAATGCCATAGTACTAATACCTAAAGTAGTAAA 12943
Query 25632 CCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAA 25691
|||||| | || ||||||||| | | ||||||||||||| | | || || ||
Sbjct 12944 CCATATACCTACTACAGGCCAAGCAACTAAGAAGAAATGTAAAGAATGAGAATCGTTGAA 13003
Query 25692 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGT 25751
|||||||| |||||||||| || ||||| || |||||||| || ||||| || | ||
Sbjct 13004 ACTAGCATATTGGAAGATGAATCGGCCAAAATAACCATGAGCAGCTACAATATTCTTAGT 13063
Query 25752 CTCTTCTTCTTGGCCGAATTTATATCC 25778
|| || ||||| || ||| | || ||
Sbjct 13064 TTCCTCCTCTTGACCAAATCTGTAACC 13090
>seq25216
Length=8180
Score = 168 bits (186), Expect = 2e-37
Identities = 179/236 (76%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 25896
|| ||||||||| ||||| | || |||||||| || | || || | ||| || ||
Sbjct 7018 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCATCTACGCCTAACATGTGAAAT 7077
Query 25897 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 25956
|| ||||||||||| ||||| || | ||| || |||| ||| || |||||||| || |||
Sbjct 7078 GGGTGCATAAGGATGTTGTGCTCAGACTGGAATACAATCATGAAGTTGAAAGTACCAGAA 7137
Query 25957 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 26016
|| || ||||||||||||||||| || || ||||| |||| ||||||| ||||| |||
Sbjct 7138 ATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACA 7197
Query 26017 GCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCC 26072
||| || || |||||||| |||||||| || | | ||||| || | ||| ||
Sbjct 7198 GCAGTAGCAGCCGCAACAGGAGCTGAATACGCAATAGCAATCCAAGGGCGCATACC 7253
>seq59
Length=339703
Score = 131 bits (144), Expect = 5e-26
Identities = 183/257 (71%), Gaps = 0/257 (0%)
Strand=Plus/Minus
Query 25726 CCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTC 25785
||||||| || ||||| ||||| |||||||| ||||| || || | || || | ||
Sbjct 52565 CCATGAGTAGCTACAATATTATAAGTCTCTTCCTCTTGACCAAACCTGTAACCTTCATTA 52506
Query 25786 TGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATA 25845
||||||| | || ||||| | ||| | || || || | | || ||||||
Sbjct 52505 GTAGATTCATTTTCTGTGGTTTCCCTAATCAAACTCGAGGTTACCAAAGAACCATGCATA 52446
Query 25846 GCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATA 25905
|| ||||| | || |||||||| || || || | | ||| || || || ||||||
Sbjct 52445 ACACTGAATAGGGAGCCGCCGAATACACCAGCTACGCTTAACATGTGAAATGGGTGCATA 52386
Query 25906 AGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGA 25965
||||| ||||| || || || || |||| ||| || |||||||| || |||| || |||
Sbjct 52385 AGGATGTTGTGCTCAGCATGGAATACAATCATGAAGTTGAAAGTACCAGAAACTCCTAGA 52326
Query 25966 GGCATACCATCAGAGAA 25982
|||||||||||||| ||
Sbjct 52325 GGCATACCATCAGAAAA 52309
>seq8630
Length=23577
Score = 91.5 bits (100), Expect = 4e-14
Identities = 100/132 (76%), Gaps = 1/132 (1%)
Strand=Plus/Minus
Query 25648 GGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGGAAG 25707
|||||||| || | |||||||||||| ||| ||| || || |||||||| ||||||
Sbjct 7628 GGCCAAGCGGCTAATAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAG 7569
Query 25708 ATGAGTCTCCCAAAGTAGCCATGAGCCGC-AACAATGTTATACGTCTCTTCTTCTTGGCC 25766
|||| || ||||| || |||||||| || || || || || || || || ||||| ||
Sbjct 7568 ATGAATCGACCAAAATAACCATGAGCAGCGTACGATATTCTAAGTTTCCTCCTCTTGACC 7509
Query 25767 GAATTTATATCC 25778
||||| || ||
Sbjct 7508 AAATTTGTAACC 7497
>seq4835
Length=43218
Score = 80.6 bits (88), Expect = 8e-11
Identities = 99/135 (73%), Gaps = 4/135 (3%)
Strand=Plus/Minus
Query 25648 GGCCAAGCAGCCAGGAAGAAATG----TAAACTACGGCTATTATTAAAGCTAGCATACTG 25703
|||||||| || | |||||||| |||| ||| || || || |||||||| ||
Sbjct 9193 GGCCAAGCGGCTAATAAGAAATGTAATTAAAGAACGAGATTTGTTGAAACTAGCATATTG 9134
Query 25704 GAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTG 25763
|||||||| ||| ||||| || |||||||| || || || || || || || || |||||
Sbjct 9133 GAAGATGAATCTGCCAAAATAACCATGAGCAGCTACGATATTCTAAGTTTCCTCCTCTTG 9074
Query 25764 GCCGAATTTATATCC 25778
|| ||| | || ||
Sbjct 9073 ACCAAATCTGTAACC 9059
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151294022287144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |