Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq270 93.3 5e-14 seq4197 84.2 3e-11 >seq270 Length=105985 Score = 93.3 bits (102), Expect = 5e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| ||||||||||| ||||| ||||| ||||| ||| | || || || ||||| Sbjct 91789 AAACAAGCAAAATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAGGTC 91848 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAAA 37291 ||||||||||| | ||| | |||||| | ||| |||| || ||| ||| ||| || || Sbjct 91849 AATCCTGGCATCAGACCGCGTTTTTTTAGCCAGAATACGGC-GCAGAAGCTTCCGGAGAA 91907 Query 37292 GAAAATACCTTCAAC 37306 ||| || ||||| || Sbjct 91908 GAAGATGCCTTCCAC 91922 >seq4197 Length=36674 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 37175 ACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAA 37234 ||| || ||||| || || || ||||| || | ||||| || || || ||||||| Sbjct 23419 ACAAGCGAAATCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAG 23478 Query 37235 TCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAAGA 37293 ||| ||||| | |||| ||||| | ||||||||| || ||| ||| | ||||| |||| Sbjct 23479 TCCAGGCATCAGTCCTCGCTTTTTTAGCCAAAATATCGC-GCAGAAGCTTCCAGAGAAGA 23537 Query 37294 AAATACCTTCAAC 37306 | ||||||||||| Sbjct 23538 AGATACCTTCAAC 23550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589447069527760