Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq270 93.3 5e-14
seq4197 84.2 3e-11
>seq270
Length=105985
Score = 93.3 bits (102), Expect = 5e-14
Identities = 103/135 (76%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232
||||| ||||||||||| ||||| ||||| ||||| ||| | || || || |||||
Sbjct 91789 AAACAAGCAAAATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAGGTC 91848
Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAAA 37291
||||||||||| | ||| | |||||| | ||| |||| || ||| ||| ||| || ||
Sbjct 91849 AATCCTGGCATCAGACCGCGTTTTTTTAGCCAGAATACGGC-GCAGAAGCTTCCGGAGAA 91907
Query 37292 GAAAATACCTTCAAC 37306
||| || ||||| ||
Sbjct 91908 GAAGATGCCTTCCAC 91922
>seq4197
Length=36674
Score = 84.2 bits (92), Expect = 3e-11
Identities = 100/133 (75%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 37175 ACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAA 37234
||| || ||||| || || || ||||| || | ||||| || || || |||||||
Sbjct 23419 ACAAGCGAAATCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAG 23478
Query 37235 TCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAAGA 37293
||| ||||| | |||| ||||| | ||||||||| || ||| ||| | ||||| ||||
Sbjct 23479 TCCAGGCATCAGTCCTCGCTTTTTTAGCCAAAATATCGC-GCAGAAGCTTCCAGAGAAGA 23537
Query 37294 AAATACCTTCAAC 37306
| |||||||||||
Sbjct 23538 AGATACCTTCAAC 23550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589447069527760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |