Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq87 138 9e-28
seq9434 129 5e-25
seq10588 127 2e-24
seq22012 123 2e-23
seq35801 114 1e-20
seq184 105 5e-18
seq10008 100 2e-16
seq130251 84.2 2e-11
seq19814 84.2 2e-11
>seq87
Length=177581
Score = 138 bits (152), Expect = 9e-28
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||| ||||| |||||||| || || || ||||| || | || || |||| ||
Sbjct 55141 ACCAAATGCAGGGTTGATTCTTTCTGGATGTTATAATCAGCAAGGGTCCTTCCATCTTCG 55200
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| |||||| || ||||| ||||| | ||| || || || ||||| || || |||||||||
Sbjct 55201 AGTTGCTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGAGGAATTCCCTCCTTATCTTGA 55260
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || ||| || | || | |||||||| | || ||||||||||| | || |||
Sbjct 55261 ATCTTAGCTTTGACGTTGTCAATGGTGTCAGAGCTCTCAACTTCAAGAGTAATAGTCTTG 55320
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || ||||| || ||||| ||||||||
Sbjct 55321 CCAGTCAAAGTCTTCACAAAGATCTGCAT 55349
Score = 122 bits (134), Expect = 7e-23
Identities = 172/242 (71%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300
|||| || || | ||| | || || || ||||| ||||| || || ||||| ||||| |
Sbjct 55349 TTCCACCCCTCAGACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATATTATAATCTG 55408
Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360
| | || | |||| ||||||||||| || ||||| || | | |||||| || || |
Sbjct 55409 CAAGTGTGCGACCATCTTCCAATTGCTTCCCGGCAAAGATGAGCCTCTGTTGGTCAGGGG 55468
Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420
|||||||||| || || || || || ||||| | || | ||||| || | || |
Sbjct 55469 GAATGCCTTCCTTGTCCTGTATCTTAGCCTTTACGTTGTCAATTGTGTCGGAGCTCTCAA 55528
Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAA 101480
|||| || |||| ||| ||||| |||| || || ||||| || ||||| | | ||||
Sbjct 55529 CTTCGAGGGTGATCGTCTTGCCAGTTAGGGTCTTGACAAAGATTTGCATCCCTCCACGAA 55588
Query 101481 GA 101482
||
Sbjct 55589 GA 55590
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
||||| | | ||| | ||| | || || || || || || || ||||| || || ||
Sbjct 55579 CCTCCACGAAGACGGAGAACCAGGTGGAGTGTGGACTCCTTCTGGATATTATAGTCAGCT 55638
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| ||||| | || || | |||||| || ||||| |||| | || ||||| || |||
Sbjct 55639 AGGGTTCTTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGATCTGGAGGA 55698
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| || || |||||||||||||| || ||| | || | |||||||| |||| ||
Sbjct 55699 ATCCCCTCCTTATCTTGAATTTTAGCCTTAACATTGTCGATTGTGTCAGAGCTTTCGACC 55758
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||||||||| || || || || | ||||| || || ||||||||
Sbjct 55759 TCAAGAGTGATGGTCTTACCTGTAAGTGTTTTCACGAAGATCTGCAT 55805
Score = 111 bits (122), Expect = 1e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| | ||| ||||||||||| || ||||| || || || ||||| || | || || |
Sbjct 54906 ACGAAGAACCAAATGAAGGGTGGACTCTTTCTGGATGTTATAATCAGCAAGGGTCCTTCC 54965
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
||| || | |||||| || ||||| ||||| | ||| || || || || || || || ||
Sbjct 54966 ATCTTCGAGTTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGGATTCCCTCCTT 55025
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
||||||||| || ||| || | || | |||||||| | || ||||| | || |
Sbjct 55026 ATCTTGAATCTTAGCTTTGACGTTGTCAATTGTGTCAGAGCTCTCAACTTCCAACGTAAT 55085
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || || || | ||||| || || ||||||||
Sbjct 55086 GGTCTTTCCCGTAAGGGTTTTGACGAAAATCTGCAT 55121
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| || || || || || || || || || || |||| ||| | |||| || | ||||
Sbjct 54463 TGCAGAGTGGACTCCTTCTGAATGTTATAGTCTGCGAGAGTACGCCCATCTTCGAGTTGC 54522
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
||||| ||||| || | | || || || ||||| || || || |||||||| ||||||
Sbjct 54523 TTACCCGCAAAGATGAGTCTTTGCTGGTCTGGCGGGATACCCTCCTTATCTTGGATTTTT 54582
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | || | ||||| || | || ||||||||||| | || || || ||
Sbjct 54583 GCCTTGACATTGTCAATGGTGTCTGAGCTCTCAACTTCAAGAGTTATTGTCTTACCAGTG 54642
Query 101447 AAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482
| ||||| ||||| || ||||| | | ||||||
Sbjct 54643 AGGGTTTTCACAAAGATTTGCATACCTCCACGAAGA 54678
>seq9434
Length=50679
Score = 129 bits (142), Expect = 5e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| || || ||||| ||||| || || || || ||||| || | || || |||| ||
Sbjct 45641 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTATAATCTGCAAGGGTCCTTCCATCTTCA 45700
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| |||||| || ||||| ||||| | ||| ||||| || ||||| || || || ||||||
Sbjct 45701 AGTTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGA 45760
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || ||| ||| | || | ||||| || | || |||||||| |||| || |||
Sbjct 45761 ATCTTAGCTTTGACATTGTCAATTGTGTCTGAGCTCTCGACTTCAAGTGTGATAGTCTTG 45820
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| |||| || ||||| |||||||||||
Sbjct 45821 CCAGTTAGGGTCTTTACGAATATCTGCAT 45849
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| ||||| | ||| | || || || ||||| || ||||| || ||||||||||| ||
Sbjct 45851 CCACCTCTGAGACGAAGCACCAAGTGGAGGGTGGACTCTTTCTGAATATTGTAATCAGCA 45910
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || || |||| || | |||||| || ||||| || | | ||||| || || |||
Sbjct 45911 AGGGTCCTTCCATCCTCTAGTTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCAGGGGGA 45970
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| || || || ||||| || || |||||| | || | |||||||| |||| ||
Sbjct 45971 ATTCCCTCCTTGTCTTGGATCTTAGCTTTTACGTTGTCAATTGTGTCAGAGCTTTCAACC 46030
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || |||| || ||||| |||| ||||| || || ||||||||
Sbjct 46031 TCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 46077
Score = 116 bits (128), Expect = 3e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
|||||| ||||| || || || |||||||| || || | || | |||| || | |||
Sbjct 44962 ATGAAGTGTAGACTCCTTCTGGATATTGTAGTCAGCTAGTGTACGCCCATCTTCGAGTTG 45021
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
||| || ||||| || | | || || || || || || |||||||||||||| |||||
Sbjct 45022 CTTCCCGGCAAAGATGAGTCTTTGCTGGTCAGGTGGGATACCTTCTTTATCTTGGATTTT 45081
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
| || ||| | || | |||||| || | || || |||||||| | ||||| || ||
Sbjct 45082 TGCCTTGACATTGTCAATAGTGTCTGAACTCTCGACCTCAAGAGTTATGGTTTTCCCAGT 45141
Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469
| ||||| ||||| ||||||||
Sbjct 45142 CAGGGTTTTAACAAAAATCTGCAT 45165
>seq10588
Length=20159
Score = 127 bits (140), Expect = 2e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
||||||||||| || || || ||||||||||| || | ||| | | |||| || | |||
Sbjct 1049 TGAAGGGTAGACTCCTTCTGAATATTGTAATCAGCAAGAGTACGGCCATCCTCAAGCTGC 1108
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||||| |||||||||||||| || || ||||| ||||| || || || || ||
Sbjct 1109 TTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATCCCTTCCTTGTCCTGGATCTTA 1168
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | || | ||| ||||| | || || || | |||| || ||||| ||
Sbjct 1169 GCCTTCACATTATCAATAGTATCAGAGCTCTCAACCTCCAAGGTGATGGTCTTGCCAGTC 1228
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
|| || || ||||| ||||||||
Sbjct 1229 AATGTCTTAACAAAGATCTGCAT 1251
>seq22012
Length=9549
Score = 123 bits (136), Expect = 2e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| | ||| | |||||||| ||||| || || || |||||||| || | || | |
Sbjct 5852 ACGAAGAACAAGGTGAAGGGTTGATTCCTTCTGAATGTTGTAATCAGCCAATGTCCGTCC 5911
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
||| || | |||||||| ||||| ||||| | ||| || || |||||||| || || ||
Sbjct 5912 ATCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGCGGAATCCCCTCCTT 5971
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
|| ||||| || || ||| | |||| ||||| || |||| || || || ||||
Sbjct 5972 GTCCTGAATCTTCGCCTTGACATTATCTATGGTGTCCGAGCTTTCAACCTCGAGGGTGAT 6031
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || || |||||||| || || |||||||||||
Sbjct 6032 AGTCTTCCCTGTTAAAGTCTTAACGAATATCTGCAT 6067
>seq35801
Length=5147
Score = 114 bits (126), Expect = 1e-20
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| | ||| | |||||||| ||||| || || || |||||||| || | || | |
Sbjct 345 ACGAAGAACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGCCAATGTCCGTCC 286
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
||| || | ||||| || ||||| ||||| | ||| || || |||||||| || || ||
Sbjct 285 ATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGCGGAATCCCCTCCTT 226
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
|| ||||| || || ||| | |||| ||||| || |||| || || || ||||
Sbjct 225 GTCCTGAATCTTCGCCTTGACATTATCTATGGTGTCCGAGCTTTCAACCTCGAGGGTGAT 166
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || || || ||||| || || |||||||||||
Sbjct 165 GGTCTTCCCTGTCAAAGTCTTGACGAATATCTGCAT 130
>seq184
Length=120086
Score = 105 bits (116), Expect = 5e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| || || ||||| || || |||||||||||||||| |||| | |||| || | |||
Sbjct 5429 TGGAGCGTCGATTCCTTCTGGATATTGTAATCGGCGAGGGTTCGGCCATCCTCTAGCTGC 5370
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
||||| || || || | || || || || || ||||| ||||| || || || || |||
Sbjct 5369 TTACCGGCGAAGATTAGCCGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTT 5310
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | || | ||||| || | ||| || || || || | ||| || || ||
Sbjct 5309 GCCTTCACATTGTCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATCGTCTTACCCGTC 5250
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| ||||| || || ||||||||
Sbjct 5249 AGGGTTTTGACGAAAATCTGCAT 5227
>seq10008
Length=28325
Score = 100 bits (110), Expect = 2e-16
Identities = 120/162 (74%), Gaps = 1/162 (1%)
Strand=Plus/Plus
Query 101242 TCCTCCTCTTAAACGTAAAACTAAA-TGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300
||||| ||| || | || || | | ||||||||||||||||| || || ||| ||||||
Sbjct 13057 TCCTCGTCTCAACCTTAGAAATGAGGTGAAGGGTAGATTCTTTCTGGATGTTGAAATCGG 13116
Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360
| || |||| | |||| |||| || || || | || |||| ||| ||||| || || |
Sbjct 13117 CAATTGTTCGGCCATCTTCCAGCTGATTTCCGGTGAAGATCAGACGTTGTTGGTCCGGGG 13176
Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTA 101402
||||||| || || ||||| || || ||| ||| ||| ||
Sbjct 13177 GAATGCCCTCCTTGTCTTGTATCTTGACTTTAACATTTTTTA 13218
>seq130251
Length=717
Score = 84.2 bits (92), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|||||||| ||||| ||||| || |||||||| || | ||| | | |||| |||||||||
Sbjct 80 TGAAGGGTTGATTCCTTTTGGATGTTGTAATCCGCTAAAGTACGGCCATCCTCCAATTGC 21
Query 101327 TTACCTGCAAATATCA 101342
|| |||||||||||||
Sbjct 20 TTCCCTGCAAATATCA 5
>seq19814
Length=35700
Score = 84.2 bits (92), Expect = 2e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 101276 GATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCA 101335
||||| ||||| || |||||||| || | ||| | | |||| ||||||||||| ||||||
Sbjct 33558 GATTCCTTTTGGATGTTGTAATCCGCTAAAGTACGGCCATCCTCCAATTGCTTCCCTGCA 33499
Query 101336 AATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATC 101376
||||||| | || ||||| || || || ||||| || ||
Sbjct 33498 AATATCAGCCTTTGCTGATCAGGAGGGATACCTTCCTTGTC 33458
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 394406459351058
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |