Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq87 138 9e-28 seq9434 129 5e-25 seq10588 127 2e-24 seq22012 123 2e-23 seq35801 114 1e-20 seq184 105 5e-18 seq10008 100 2e-16 seq130251 84.2 2e-11 seq19814 84.2 2e-11 >seq87 Length=177581 Score = 138 bits (152), Expect = 9e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| ||||| |||||||| || || || ||||| || | || || |||| || Sbjct 55141 ACCAAATGCAGGGTTGATTCTTTCTGGATGTTATAATCAGCAAGGGTCCTTCCATCTTCG 55200 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||| || ||||| ||||| | ||| || || || ||||| || || ||||||||| Sbjct 55201 AGTTGCTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGAGGAATTCCCTCCTTATCTTGA 55260 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| || | || | |||||||| | || ||||||||||| | || ||| Sbjct 55261 ATCTTAGCTTTGACGTTGTCAATGGTGTCAGAGCTCTCAACTTCAAGAGTAATAGTCTTG 55320 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||| || ||||| |||||||| Sbjct 55321 CCAGTCAAAGTCTTCACAAAGATCTGCAT 55349 Score = 122 bits (134), Expect = 7e-23 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || || | ||| | || || || ||||| ||||| || || ||||| ||||| | Sbjct 55349 TTCCACCCCTCAGACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATATTATAATCTG 55408 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | || | |||| ||||||||||| || ||||| || | | |||||| || || | Sbjct 55409 CAAGTGTGCGACCATCTTCCAATTGCTTCCCGGCAAAGATGAGCCTCTGTTGGTCAGGGG 55468 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||||||||| || || || || || ||||| | || | ||||| || | || | Sbjct 55469 GAATGCCTTCCTTGTCCTGTATCTTAGCCTTTACGTTGTCAATTGTGTCGGAGCTCTCAA 55528 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAA 101480 |||| || |||| ||| ||||| |||| || || ||||| || ||||| | | |||| Sbjct 55529 CTTCGAGGGTGATCGTCTTGCCAGTTAGGGTCTTGACAAAGATTTGCATCCCTCCACGAA 55588 Query 101481 GA 101482 || Sbjct 55589 GA 55590 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | ||| | || || || || || || || ||||| || || || Sbjct 55579 CCTCCACGAAGACGGAGAACCAGGTGGAGTGTGGACTCCTTCTGGATATTATAGTCAGCT 55638 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | || || | |||||| || ||||| |||| | || ||||| || ||| Sbjct 55639 AGGGTTCTTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGATCTGGAGGA 55698 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || |||||||||||||| || ||| | || | |||||||| |||| || Sbjct 55699 ATCCCCTCCTTATCTTGAATTTTAGCCTTAACATTGTCGATTGTGTCAGAGCTTTCGACC 55758 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| || || || || | ||||| || || |||||||| Sbjct 55759 TCAAGAGTGATGGTCTTACCTGTAAGTGTTTTCACGAAGATCTGCAT 55805 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| ||||||||||| || ||||| || || || ||||| || | || || | Sbjct 54906 ACGAAGAACCAAATGAAGGGTGGACTCTTTCTGGATGTTATAATCAGCAAGGGTCCTTCC 54965 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | |||||| || ||||| ||||| | ||| || || || || || || || || Sbjct 54966 ATCTTCGAGTTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGGATTCCCTCCTT 55025 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||||||| || ||| || | || | |||||||| | || ||||| | || | Sbjct 55026 ATCTTGAATCTTAGCTTTGACGTTGTCAATTGTGTCAGAGCTCTCAACTTCCAACGTAAT 55085 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || | ||||| || || |||||||| Sbjct 55086 GGTCTTTCCCGTAAGGGTTTTGACGAAAATCTGCAT 55121 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || || || || |||| ||| | |||| || | |||| Sbjct 54463 TGCAGAGTGGACTCCTTCTGAATGTTATAGTCTGCGAGAGTACGCCCATCTTCGAGTTGC 54522 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| || | | || || || ||||| || || || |||||||| |||||| Sbjct 54523 TTACCCGCAAAGATGAGTCTTTGCTGGTCTGGCGGGATACCCTCCTTATCTTGGATTTTT 54582 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| || | || ||||||||||| | || || || || Sbjct 54583 GCCTTGACATTGTCAATGGTGTCTGAGCTCTCAACTTCAAGAGTTATTGTCTTACCAGTG 54642 Query 101447 AAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 | ||||| ||||| || ||||| | | |||||| Sbjct 54643 AGGGTTTTCACAAAGATTTGCATACCTCCACGAAGA 54678 >seq9434 Length=50679 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||| ||||| || || || || ||||| || | || || |||| || Sbjct 45641 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTATAATCTGCAAGGGTCCTTCCATCTTCA 45700 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||| || ||||| ||||| | ||| ||||| || ||||| || || || |||||| Sbjct 45701 AGTTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGA 45760 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| | || | ||||| || | || |||||||| |||| || ||| Sbjct 45761 ATCTTAGCTTTGACATTGTCAATTGTGTCTGAGCTCTCGACTTCAAGTGTGATAGTCTTG 45820 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || |||| || ||||| ||||||||||| Sbjct 45821 CCAGTTAGGGTCTTTACGAATATCTGCAT 45849 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | || || || ||||| || ||||| || ||||||||||| || Sbjct 45851 CCACCTCTGAGACGAAGCACCAAGTGGAGGGTGGACTCTTTCTGAATATTGTAATCAGCA 45910 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || || |||| || | |||||| || ||||| || | | ||||| || || ||| Sbjct 45911 AGGGTCCTTCCATCCTCTAGTTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCAGGGGGA 45970 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || ||||| || || |||||| | || | |||||||| |||| || Sbjct 45971 ATTCCCTCCTTGTCTTGGATCTTAGCTTTTACGTTGTCAATTGTGTCAGAGCTTTCAACC 46030 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || ||||| |||| ||||| || || |||||||| Sbjct 46031 TCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 46077 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| ||||| || || || |||||||| || || | || | |||| || | ||| Sbjct 44962 ATGAAGTGTAGACTCCTTCTGGATATTGTAGTCAGCTAGTGTACGCCCATCTTCGAGTTG 45021 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| || | | || || || || || || |||||||||||||| ||||| Sbjct 45022 CTTCCCGGCAAAGATGAGTCTTTGCTGGTCAGGTGGGATACCTTCTTTATCTTGGATTTT 45081 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | || ||| | || | |||||| || | || || |||||||| | ||||| || || Sbjct 45082 TGCCTTGACATTGTCAATAGTGTCTGAACTCTCGACCTCAAGAGTTATGGTTTTCCCAGT 45141 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||||| ||||| |||||||| Sbjct 45142 CAGGGTTTTAACAAAAATCTGCAT 45165 >seq10588 Length=20159 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||||||||| || || || ||||||||||| || | ||| | | |||| || | ||| Sbjct 1049 TGAAGGGTAGACTCCTTCTGAATATTGTAATCAGCAAGAGTACGGCCATCCTCAAGCTGC 1108 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||||||||||||| || || ||||| ||||| || || || || || Sbjct 1109 TTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATCCCTTCCTTGTCCTGGATCTTA 1168 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||| ||||| | || || || | |||| || ||||| || Sbjct 1169 GCCTTCACATTATCAATAGTATCAGAGCTCTCAACCTCCAAGGTGATGGTCTTGCCAGTC 1228 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| |||||||| Sbjct 1229 AATGTCTTAACAAAGATCTGCAT 1251 >seq22012 Length=9549 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | |||||||| ||||| || || || |||||||| || | || | | Sbjct 5852 ACGAAGAACAAGGTGAAGGGTTGATTCCTTCTGAATGTTGTAATCAGCCAATGTCCGTCC 5911 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | |||||||| ||||| ||||| | ||| || || |||||||| || || || Sbjct 5912 ATCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGCGGAATCCCCTCCTT 5971 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || ||||| || || ||| | |||| ||||| || |||| || || || |||| Sbjct 5972 GTCCTGAATCTTCGCCTTGACATTATCTATGGTGTCCGAGCTTTCAACCTCGAGGGTGAT 6031 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || |||||||| || || ||||||||||| Sbjct 6032 AGTCTTCCCTGTTAAAGTCTTAACGAATATCTGCAT 6067 >seq35801 Length=5147 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | |||||||| ||||| || || || |||||||| || | || | | Sbjct 345 ACGAAGAACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGCCAATGTCCGTCC 286 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | ||||| || ||||| ||||| | ||| || || |||||||| || || || Sbjct 285 ATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGCGGAATCCCCTCCTT 226 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || ||||| || || ||| | |||| ||||| || |||| || || || |||| Sbjct 225 GTCCTGAATCTTCGCCTTGACATTATCTATGGTGTCCGAGCTTTCAACCTCGAGGGTGAT 166 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || ||||| || || ||||||||||| Sbjct 165 GGTCTTCCCTGTCAAAGTCTTGACGAATATCTGCAT 130 >seq184 Length=120086 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || ||||| || || |||||||||||||||| |||| | |||| || | ||| Sbjct 5429 TGGAGCGTCGATTCCTTCTGGATATTGTAATCGGCGAGGGTTCGGCCATCCTCTAGCTGC 5370 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| || || || | || || || || || ||||| ||||| || || || || ||| Sbjct 5369 TTACCGGCGAAGATTAGCCGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTT 5310 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| || | ||| || || || || | ||| || || || Sbjct 5309 GCCTTCACATTGTCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATCGTCTTACCCGTC 5250 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || |||||||| Sbjct 5249 AGGGTTTTGACGAAAATCTGCAT 5227 >seq10008 Length=28325 Score = 100 bits (110), Expect = 2e-16 Identities = 120/162 (74%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 101242 TCCTCCTCTTAAACGTAAAACTAAA-TGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||| ||| || | || || | | ||||||||||||||||| || || ||| |||||| Sbjct 13057 TCCTCGTCTCAACCTTAGAAATGAGGTGAAGGGTAGATTCTTTCTGGATGTTGAAATCGG 13116 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || |||| | |||| |||| || || || | || |||| ||| ||||| || || | Sbjct 13117 CAATTGTTCGGCCATCTTCCAGCTGATTTCCGGTGAAGATCAGACGTTGTTGGTCCGGGG 13176 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTA 101402 ||||||| || || ||||| || || ||| ||| ||| || Sbjct 13177 GAATGCCCTCCTTGTCTTGTATCTTGACTTTAACATTTTTTA 13218 >seq130251 Length=717 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| ||||| ||||| || |||||||| || | ||| | | |||| ||||||||| Sbjct 80 TGAAGGGTTGATTCCTTTTGGATGTTGTAATCCGCTAAAGTACGGCCATCCTCCAATTGC 21 Query 101327 TTACCTGCAAATATCA 101342 || ||||||||||||| Sbjct 20 TTCCCTGCAAATATCA 5 >seq19814 Length=35700 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 101276 GATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCA 101335 ||||| ||||| || |||||||| || | ||| | | |||| ||||||||||| |||||| Sbjct 33558 GATTCCTTTTGGATGTTGTAATCCGCTAAAGTACGGCCATCCTCCAATTGCTTCCCTGCA 33499 Query 101336 AATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATC 101376 ||||||| | || ||||| || || || ||||| || || Sbjct 33498 AATATCAGCCTTTGCTGATCAGGAGGGATACCTTCCTTGTC 33458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394406459351058