Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq10588 96.9 3e-15
seq9434 87.8 1e-12
seq87 86.0 5e-12
seq184 84.2 2e-11
>seq10588
Length=20159
Score = 96.9 bits (106), Expect = 3e-15
Identities = 137/193 (71%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || |||||||||||||||| ||| | || | || || | |||||| || |||||
Sbjct 1060 CTCCTTCTGAATATTGTAATCAGCAAGAGTACGGCCATCCTCAAGCTGCTTTCCAGCAAA 1119
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|||| |||||||| || | |||| || |||||||| ||||| || |||
Sbjct 1120 GATCAAACGCTGTTGGTCTGGAGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTCACATT 1179
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | || || || ||| ||||||| || || || || || ||||| || || ||
Sbjct 1180 ATCAATAGTATCAGAGCTCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAATGTCTTAAC 1239
Query 48755 AAAAATCTGCATC 48767
||| |||||||||
Sbjct 1240 AAAGATCTGCATC 1252
>seq9434
Length=50679
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || || || || | |||||| || || ||| |||||| ||||||||||||||||
Sbjct 45851 CCACCTCTGAGACGAAGCACCAAGTGGAGGGTGGACTCTTTCTGAATATTGTAATCAGCA 45910
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | | | || || | ||||| |||||||| || |||| ||||| || | ||||
Sbjct 45911 AGGGTCCTTCCATCCTCTAGTTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCAGGGGGA 45970
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||||||||||| ||||| |||||| | | | || || || |||
Sbjct 45971 ATTCCCTCCTTGTCTTGGATCTTAGCTTTTACGTTGTCAATTGTGTCAGAGCTTTCAACC 46030
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|| | || || || || || || | ||||| || || |||||||||
Sbjct 46031 TCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCATC 46078
>seq87
Length=177581
Score = 86.0 bits (94), Expect = 5e-12
Identities = 147/212 (69%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGA---CTTCGATCGTCG 48614
|||||||| || ||| |||||| || || || ||||||| || |||| ||| |||
Sbjct 54913 ACCAAATGAAGGGTGGACTCTTTCTGGATGTTATAATCAGCAAGGGTCCTTCCATCTTCG 54972
Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674
| ||||| |||||||| |||| || ||| || || | || | |||||||| ||
Sbjct 54973 ---AGTTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCT 55029
Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734
|||||| ||| || | | | || || ||| || |||| |||||| ||
Sbjct 55030 TGAATCTTAGCTTTGACGTTGTCAATTGTGTCAGAGCTCTCAACTTCCAACGTAATGGTC 55089
Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||||||| | ||||| || |||||||||||
Sbjct 55090 TTTCCCGTAAGGGTTTTGACGAAAATCTGCAT 55121
>seq184
Length=120086
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/219 (68%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||||| || ||||| || || || ||||||||||| | || ||||
Sbjct 5444 AGACGAAGCACCAGGTGGAGCGTCGATTCCTTCTGGATATTGTAATCGGCGAGGGTTCGG 5385
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | |||||||||||| || || || || || || || | |||| || |||
Sbjct 5384 CCATCCTCTAGCTGCTTACCGGCGAAGATTAGCCGTTGCTGGTCTGGTGGAATTCCTTCC 5325
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| |||||| || ||| | | | || || | || ||||| | ||
Sbjct 5324 TTGTCCTGGATCTTTGCCTTCACATTGTCGATGGTGTCGGAGGATTCGACCTCGAGGGTT 5265
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
||||| || ||||||| ||||| || ||||||||||||
Sbjct 5264 ATCGTCTTACCCGTCAGGGTTTTGACGAAAATCTGCATC 5226
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379138126250862
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |