Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq5412 347 1e-90 seq8546 233 2e-56 seq25216 178 1e-39 seq59 176 5e-39 seq29420 170 2e-37 seq8630 91.5 2e-13 >seq5412 Length=31808 Score = 347 bits (384), Expect = 1e-90 Identities = 492/692 (71%), Gaps = 6/692 (1%) Strand=Plus/Minus Query 162545 GGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCAT 162604 |||| || || |||||||| ||| ||| | | ||| || | || || || || | Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAACATCCGTATTTATTATAGCCT 15224 Query 162605 TCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTC 162664 ||||||| || ||||| || ||||| |||||||| | ||||||||| || || |||| Sbjct 15223 TCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTTC 15164 Query 162665 TCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTC 162724 | || || ||||| || ||||||||||| | ||| | || |||||| ||| | | Sbjct 15163 TTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTGC 15104 Query 162725 ACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTT 162784 |||| ||||| || |||||||| ||| || ||||||| ||||| || |||||||| || | Sbjct 15103 ACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCAT 15044 Query 162785 TCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGG 162844 | || | || || |||||| | | || | | ||| |||||| |||||| Sbjct 15043 ATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGG 14984 Query 162845 AACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTAT 162904 ||||| || ||| | |||||||| |||||||| |||||| || || || || || Sbjct 14983 AACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTTG 14924 Query 162905 CTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAA 162964 | | || ||||| |||||| |||| || | ||| |||| || ||| | | | Sbjct 14923 CGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGTA 14864 Query 162965 TGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACA 163024 ||||||| || |||||||||||||| |||| |||| | || ||||| || |||||||||| Sbjct 14863 TGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACA 14804 Query 163025 TCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTA 163084 |||| |||||||| || || ||| | || || || |||||||||| || | || || | Sbjct 14803 TCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTCA 14744 Query 163085 GTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGT 163144 | ||| |||||| | || || || | | ||||| ||||| || || | || | Sbjct 14743 G------GCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAAT 14690 Query 163145 CACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTC 163204 | || | ||||| | | | || ||||| ||||||||||| || || || ||||||| Sbjct 14689 CTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCTC 14630 Query 163205 ATGGATACTTTGGTCGCTTGATCTTCCAGTAT 163236 |||| || ||||| || || |||||||| ||| Sbjct 14629 ATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/139 (76%), Gaps = 6/139 (4%) Strand=Plus/Minus Query 163349 TCAACTTCAACCAATCCGTCGTTGACGC---AGGTGGTAAAGTGATTCCTACTTGGGCAG 163405 |||| ||||||||||| || ||||| |||| || || ||| ||||||||| | Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGT---GTAATTAATACTTGGGCTG 14540 Query 163406 ATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACT 163465 |||| ||||| | | |||||||||||||||||||| || |||||||||| |||| Sbjct 14539 ATATTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACT 14480 Query 163466 TCCCACTTGACCTTGCTGC 163484 |||| || ||||| || || Sbjct 14479 TCCCTCTCGACCTAGCAGC 14461 >seq8546 Length=31398 Score = 233 bits (258), Expect = 2e-56 Identities = 321/447 (72%), Gaps = 10/447 (2%) Strand=Plus/Minus Query 163042 CATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCT 163101 || ||| | || || || ||||||||||| || || | || |||| |||||| |||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 163102 CTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTAT 163161 | || || ||| | | ||||| ||||| || || | | || || | ||||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 163162 AAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGC 163221 | || || ||||| || || ||| | || ||||| ||||||||||| || ||||| || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 163222 TTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCA 163281 || |||||||| ||||| ||||||| | || | ||| | || |||||| | | ||| Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965 Query 163282 TTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTT 163341 | ||||| || | || ||||| ||| | | ||| | ||||||||||| | ||| Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905 Query 163342 AACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACT 163398 ||||| ||||| ||||||||||| || ||||| |||| || || ||| | Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGT---GTAATT----AT 12852 Query 163399 TGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCT 163458 ||||| ||||| ||||| | || |||||||||||||||||||| || ||||||||| Sbjct 12851 TGGGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 12792 Query 163459 CACAACTTCCCACTTGACCTTGCTGCT 163485 || ||||||| || ||||| |||||| Sbjct 12791 CATAACTTCCATCTAGACCTAGCTGCT 12765 >seq25216 Length=8180 Score = 178 bits (196), Expect = 1e-39 Identities = 205/275 (75%), Gaps = 1/275 (0%) Strand=Plus/Minus Query 162859 TTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCT 162918 || |||||||| |||||||| | |||| || || || || || | || || ||| Sbjct 7256 TTTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCT 7197 Query 162919 GTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATT 162978 || |||||| |||| || | |||||||| || ||||| | |||||||| || ||| Sbjct 7196 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 7137 Query 162979 TCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCC 163038 ||||||||||| |||| |||| | || ||||| | |||||||||||||| |||||||| Sbjct 7136 TCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCA 7077 Query 163039 TTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGT 163098 || || ||| | || || | ||||||||||| || || || || ||||||||||| ||| Sbjct 7076 TTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 7017 Query 163099 TCTCTTGTTACTTCTTCTCTTATCAGAGAAACTAC 163133 ||| | || || || | | ||||| ||||| || Sbjct 7016 TCTTTGGTAACCTCGAGTTTGATCAG-GAAACCAC 6983 >seq59 Length=339703 Score = 176 bits (194), Expect = 5e-39 Identities = 193/257 (75%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 162952 TTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAA 163011 || ||||| | |||||||| || ||||||||||||| |||| |||| | || ||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 163012 GCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGT 163071 || |||||||||||||| |||||||| || || ||| | | || || ||||||||||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 163072 GGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACT 163131 || || || || |||| |||||| |||||| | || || || | | || || ||||| Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 163132 ACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAAC 163191 || || | || || || | ||||| | ||| || ||||| ||||||||||| || Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 163192 ATTGTTGCTGCTCATGG 163208 ||||| ||| ||||||| Sbjct 52549 ATTGTAGCTACTCATGG 52565 >seq29420 Length=7120 Score = 170 bits (188), Expect = 2e-37 Identities = 253/359 (70%), Gaps = 0/359 (0%) Strand=Plus/Plus Query 162613 GCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGT 162672 || ||||| || ||||| |||||||| | ||||||||| | || || ||||| | || Sbjct 3416 GCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGGA 3475 Query 162673 AACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTAT 162732 ||||| || |||||||||| | |||| | ||| |||||| ||| | ||||| ||| Sbjct 3476 AACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTAT 3535 Query 162733 CCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTT 162792 || || |||||||| ||| || ||||||| ||||| || |||||||| |||| | || Sbjct 3536 CCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTA 3595 Query 162793 GTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCT 162852 || || |||||| | | || | | ||| |||||| ||||||||||| | Sbjct 3596 AATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGT 3655 Query 162853 TACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCA 162912 | ||| | |||||||| |||||||| |||||| || || | || || | || || Sbjct 3656 TTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGCT 3715 Query 162913 TTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCT 162971 || | |||||| |||| || | |||||||| || ||||| | |||||||| Sbjct 3716 ACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774 >seq8630 Length=23577 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/117 (78%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTT-GCTGCTCATGGATACTT 163214 ||||| || || || ||||| || || ||||| || || || ||||||||||| || || Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 163215 TGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTT 163271 |||||| || |||||||| ||||| ||||||||| || ||||| | || ||||| Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTT 7613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 550405145625360