Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_019443.1
Length=172879
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 347 1e-90
seq8546 233 2e-56
seq25216 178 1e-39
seq59 176 5e-39
seq29420 170 2e-37
seq8630 91.5 2e-13
>seq5412
Length=31808
Score = 347 bits (384), Expect = 1e-90
Identities = 492/692 (71%), Gaps = 6/692 (1%)
Strand=Plus/Minus
Query 162545 GGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCAT 162604
|||| || || |||||||| ||| ||| | | ||| || | || || || || |
Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAACATCCGTATTTATTATAGCCT 15224
Query 162605 TCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTC 162664
||||||| || ||||| || ||||| |||||||| | ||||||||| || || ||||
Sbjct 15223 TCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTTC 15164
Query 162665 TCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTC 162724
| || || ||||| || ||||||||||| | ||| | || |||||| ||| | |
Sbjct 15163 TTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTGC 15104
Query 162725 ACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTT 162784
|||| ||||| || |||||||| ||| || ||||||| ||||| || |||||||| || |
Sbjct 15103 ACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCAT 15044
Query 162785 TCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGG 162844
| || | || || |||||| | | || | | ||| |||||| ||||||
Sbjct 15043 ATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGG 14984
Query 162845 AACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTAT 162904
||||| || ||| | |||||||| |||||||| |||||| || || || || ||
Sbjct 14983 AACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTTG 14924
Query 162905 CTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAA 162964
| | || ||||| |||||| |||| || | ||| |||| || ||| | | |
Sbjct 14923 CGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGTA 14864
Query 162965 TGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACA 163024
||||||| || |||||||||||||| |||| |||| | || ||||| || ||||||||||
Sbjct 14863 TGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACA 14804
Query 163025 TCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTA 163084
|||| |||||||| || || ||| | || || || |||||||||| || | || || |
Sbjct 14803 TCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTCA 14744
Query 163085 GTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGT 163144
| ||| |||||| | || || || | | ||||| ||||| || || | || |
Sbjct 14743 G------GCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAAT 14690
Query 163145 CACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTC 163204
| || | ||||| | | | || ||||| ||||||||||| || || || |||||||
Sbjct 14689 CTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCTC 14630
Query 163205 ATGGATACTTTGGTCGCTTGATCTTCCAGTAT 163236
|||| || ||||| || || |||||||| |||
Sbjct 14629 ATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/139 (76%), Gaps = 6/139 (4%)
Strand=Plus/Minus
Query 163349 TCAACTTCAACCAATCCGTCGTTGACGC---AGGTGGTAAAGTGATTCCTACTTGGGCAG 163405
|||| ||||||||||| || ||||| |||| || || ||| ||||||||| |
Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGT---GTAATTAATACTTGGGCTG 14540
Query 163406 ATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACT 163465
|||| ||||| | | |||||||||||||||||||| || |||||||||| ||||
Sbjct 14539 ATATTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACT 14480
Query 163466 TCCCACTTGACCTTGCTGC 163484
|||| || ||||| || ||
Sbjct 14479 TCCCTCTCGACCTAGCAGC 14461
>seq8546
Length=31398
Score = 233 bits (258), Expect = 2e-56
Identities = 321/447 (72%), Gaps = 10/447 (2%)
Strand=Plus/Minus
Query 163042 CATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCT 163101
|| ||| | || || || ||||||||||| || || | || |||| |||||| ||||||
Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145
Query 163102 CTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTAT 163161
| || || ||| | | ||||| ||||| || || | | || || | |||||
Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085
Query 163162 AAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGC 163221
| || || ||||| || || ||| | || ||||| ||||||||||| || ||||| ||
Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025
Query 163222 TTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCA 163281
|| |||||||| ||||| ||||||| | || | ||| | || |||||| | | |||
Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965
Query 163282 TTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTT 163341
| ||||| || | || ||||| ||| | | ||| | ||||||||||| | |||
Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905
Query 163342 AACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACT 163398
||||| ||||| ||||||||||| || ||||| |||| || || ||| |
Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGT---GTAATT----AT 12852
Query 163399 TGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCT 163458
||||| ||||| ||||| | || |||||||||||||||||||| || |||||||||
Sbjct 12851 TGGGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 12792
Query 163459 CACAACTTCCCACTTGACCTTGCTGCT 163485
|| ||||||| || ||||| ||||||
Sbjct 12791 CATAACTTCCATCTAGACCTAGCTGCT 12765
>seq25216
Length=8180
Score = 178 bits (196), Expect = 1e-39
Identities = 205/275 (75%), Gaps = 1/275 (0%)
Strand=Plus/Minus
Query 162859 TTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCT 162918
|| |||||||| |||||||| | |||| || || || || || | || || |||
Sbjct 7256 TTTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCT 7197
Query 162919 GTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATT 162978
|| |||||| |||| || | |||||||| || ||||| | |||||||| || |||
Sbjct 7196 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 7137
Query 162979 TCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCC 163038
||||||||||| |||| |||| | || ||||| | |||||||||||||| ||||||||
Sbjct 7136 TCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCA 7077
Query 163039 TTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGT 163098
|| || ||| | || || | ||||||||||| || || || || ||||||||||| |||
Sbjct 7076 TTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 7017
Query 163099 TCTCTTGTTACTTCTTCTCTTATCAGAGAAACTAC 163133
||| | || || || | | ||||| ||||| ||
Sbjct 7016 TCTTTGGTAACCTCGAGTTTGATCAG-GAAACCAC 6983
>seq59
Length=339703
Score = 176 bits (194), Expect = 5e-39
Identities = 193/257 (75%), Gaps = 0/257 (0%)
Strand=Plus/Plus
Query 162952 TTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAA 163011
|| ||||| | |||||||| || ||||||||||||| |||| |||| | || |||||
Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368
Query 163012 GCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGT 163071
|| |||||||||||||| |||||||| || || ||| | | || || |||||||||||
Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428
Query 163072 GGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACT 163131
|| || || || |||| |||||| |||||| | || || || | | || || |||||
Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488
Query 163132 ACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAAC 163191
|| || | || || || | ||||| | ||| || ||||| ||||||||||| ||
Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548
Query 163192 ATTGTTGCTGCTCATGG 163208
||||| ||| |||||||
Sbjct 52549 ATTGTAGCTACTCATGG 52565
>seq29420
Length=7120
Score = 170 bits (188), Expect = 2e-37
Identities = 253/359 (70%), Gaps = 0/359 (0%)
Strand=Plus/Plus
Query 162613 GCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGT 162672
|| ||||| || ||||| |||||||| | ||||||||| | || || ||||| | ||
Sbjct 3416 GCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGGA 3475
Query 162673 AACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTAT 162732
||||| || |||||||||| | |||| | ||| |||||| ||| | ||||| |||
Sbjct 3476 AACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTAT 3535
Query 162733 CCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTT 162792
|| || |||||||| ||| || ||||||| ||||| || |||||||| |||| | ||
Sbjct 3536 CCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTA 3595
Query 162793 GTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCT 162852
|| || |||||| | | || | | ||| |||||| ||||||||||| |
Sbjct 3596 AATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGT 3655
Query 162853 TACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCA 162912
| ||| | |||||||| |||||||| |||||| || || | || || | || ||
Sbjct 3656 TTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGCT 3715
Query 162913 TTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCT 162971
|| | |||||| |||| || | |||||||| || ||||| | ||||||||
Sbjct 3716 ACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774
>seq8630
Length=23577
Score = 91.5 bits (100), Expect = 2e-13
Identities = 91/117 (78%), Gaps = 1/117 (1%)
Strand=Plus/Plus
Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTT-GCTGCTCATGGATACTT 163214
||||| || || || ||||| || || ||||| || || || ||||||||||| || ||
Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556
Query 163215 TGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTT 163271
|||||| || |||||||| ||||| ||||||||| || ||||| | || |||||
Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTT 7613
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 550405145625360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |