Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_019444.1
Length=176043
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 324 2e-83
seq8546 203 4e-47
seq25216 156 5e-33
seq29420 140 4e-28
seq59 140 4e-28
>seq5412
Length=31808
Score = 324 bits (358), Expect = 2e-83
Identities = 489/693 (71%), Gaps = 8/693 (1%)
Strand=Plus/Minus
Query 162938 GGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCC 162996
|||| ||||| |||||||||| || | ||| | ||||| ||| || || || | |||
Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225
Query 162997 TTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTC 163056
||| | |||||||| || || || ||||| || || ||||| || || ||| || ||
Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165
Query 163057 ATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTT 163116
| || || ||||| || ||||||||||| || ||| ||| || || ||| |
Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105
Query 163117 CACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCT 163176
||||| ||||| || |||||||| ||||| ||||||| ||| | || || ||||||||
Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045
Query 163177 TTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGG 163236
| | || | || ||||||||| | | || | | || ||||| ||||| |||
Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985
Query 163237 GAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTT 163296
|||||| | || | ||||||||||| ||||| ||| || || || || ||||||
Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925
Query 163297 GCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCA 163356
|| | || | || || ||| || |||| || | ||| |||| || ||| | |
Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865
Query 163357 ATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 163416
||||| || || || ||||| || ||||||| |||| |||| ||||| || |||||||||
Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805
Query 163417 ATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTC 163476
||||| |||||||| || || ||||| || || |||||||| |||| || | || |||
Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745
Query 163477 TCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAG 163536
| |||||| | | || ||||| | || | || || || |||| |||
Sbjct 14744 ------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691
Query 163537 TCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCA 163596
|| || | ||||||| | |||||||||| |||||||| || || ||||| || ||
Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631
Query 163597 CATGGCTACTTCGGTCGTTTGATCTTCCAATAT 163629
||||| || || || || || ||||||||||||
Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598
Score = 105 bits (116), Expect = 7e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 163742 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACG 163801
|||| |||||||| || | ||||| |||| |||||||| | || |||||||| ||
Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537
Query 163802 TGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 163861
| |||||||| || || |||||||||||||||||||| ||||| || | |||||||
Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477
Query 163862 CACTCGATCTTGCTGC 163877
| ||||| || || ||
Sbjct 14476 CTCTCGACCTAGCAGC 14461
>seq8546
Length=31398
Score = 203 bits (224), Expect = 4e-47
Identities = 314/446 (70%), Gaps = 8/446 (2%)
Strand=Plus/Minus
Query 163435 CATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATGGCAGT 163494
|| ||||| || || |||||||| ||||| || || | ||| | |||||||| |
Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145
Query 163495 CTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTATGGTTAC 163554
| || |||||| | || | || || || |||| | | || || | ||||||
Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085
Query 163555 AAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGT 163614
| ||||||||||| || || || | || || || || || ||||| || || || ||
Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025
Query 163615 TTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTT--CACTTCTTCCTGGCAG 163672
|| |||||||||||||| |||||| | | |||| || |||||| | | |
Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAAC--GATTCTCATTCTTTACATTTCTTCTTAGTTG 12967
Query 163673 CATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTCAACC 163732
| |||||||| || || || ||||||||| | | || | || || |||||||| | ||
Sbjct 12966 CTTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCC 12907
Query 163733 TCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACACTT 163792
| ||||| ||||| |||||||| || | ||||| |||| |||||||| || ||
Sbjct 12906 TAAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT----AATTATT 12851
Query 163793 GGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCAC 163852
|||| || | ||||||||||| || |||||||||||||||||||| ||||| || |
Sbjct 12850 GGGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 12791
Query 163853 ACAACTTCCCACTCGATCTTGCTGCT 163878
| ||||||| || || || ||||||
Sbjct 12790 ATAACTTCCATCTAGACCTAGCTGCT 12765
>seq25216
Length=8180
Score = 156 bits (172), Expect = 5e-33
Identities = 178/239 (74%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 163252 TTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCA 163311
|| ||||||||||| ||||| | | || || || || |||||||| || || | ||
Sbjct 7256 TTTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCT 7197
Query 163312 GTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATC 163371
|| ||| || |||| || | |||||||| || ||||| | ||||| || || ||
Sbjct 7196 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 7137
Query 163372 TCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCC 163431
||||| || ||||||| |||| |||| ||||| | |||||||||||||| ||||||||
Sbjct 7136 TCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCA 7077
Query 163432 TTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATGG 163490
|| || ||||| || || | |||||| ||||| || || || ||| || ||||||||
Sbjct 7076 TTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 7018
>seq29420
Length=7120
Score = 140 bits (154), Expect = 4e-28
Identities = 247/360 (69%), Gaps = 0/360 (0%)
Strand=Plus/Plus
Query 163005 TGCTCCCCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGG 163064
|||||| || || || ||||| || || ||||| || || |||| || || | | ||
Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474
Query 163065 CAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTA 163124
||||| || |||||||||| || |||| |||| || || ||| | ||||| ||
Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534
Query 163125 TCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACT 163184
||| || |||||||| ||||| ||||||| ||| | || || |||||||||| | ||
Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594
Query 163185 CGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTC 163244
|| || |||||| | | || | | || ||||| ||||| |||||||||
Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654
Query 163245 ATATCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGC 163304
| || | ||||||||||| ||||| ||| || || || | |||||||| || ||
Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714
Query 163305 ATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACT 163364
| | | ||| || |||| || | |||||||| || ||||| | ||||| ||
Sbjct 3715 TACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774
>seq59
Length=339703
Score = 140 bits (154), Expect = 4e-28
Identities = 185/257 (72%), Gaps = 0/257 (0%)
Strand=Plus/Plus
Query 163345 TTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAA 163404
|| ||||| | ||||| || || | ||||| || ||||||| |||| |||| |||||
Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368
Query 163405 GCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGT 163464
|| |||||||||||||| |||||||| || || ||||| | || |||||||| |||||
Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428
Query 163465 GGATCACTCTTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACG 163524
|| || || ||| | |||||||| | | || ||||| | | | || ||
Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488
Query 163525 ACTGAAACTGAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAAC 163584
|| |||| ||| || || | ||||||| |||||||||||| |||||||| || ||
Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548
Query 163585 ATCGTTGCAGCACATGG 163601
|| || || | |||||
Sbjct 52549 ATTGTAGCTACTCATGG 52565
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 560480891728720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |