Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq5412 324 2e-83 seq8546 203 4e-47 seq25216 156 5e-33 seq29420 140 4e-28 seq59 140 4e-28 >seq5412 Length=31808 Score = 324 bits (358), Expect = 2e-83 Identities = 489/693 (71%), Gaps = 8/693 (1%) Strand=Plus/Minus Query 162938 GGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCC 162996 |||| ||||| |||||||||| || | ||| | ||||| ||| || || || | ||| Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225 Query 162997 TTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTC 163056 ||| | |||||||| || || || ||||| || || ||||| || || ||| || || Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165 Query 163057 ATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTT 163116 | || || ||||| || ||||||||||| || ||| ||| || || ||| | Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105 Query 163117 CACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCT 163176 ||||| ||||| || |||||||| ||||| ||||||| ||| | || || |||||||| Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045 Query 163177 TTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGG 163236 | | || | || ||||||||| | | || | | || ||||| ||||| ||| Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985 Query 163237 GAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTT 163296 |||||| | || | ||||||||||| ||||| ||| || || || || |||||| Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925 Query 163297 GCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCA 163356 || | || | || || ||| || |||| || | ||| |||| || ||| | | Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865 Query 163357 ATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 163416 ||||| || || || ||||| || ||||||| |||| |||| ||||| || ||||||||| Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805 Query 163417 ATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTC 163476 ||||| |||||||| || || ||||| || || |||||||| |||| || | || ||| Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745 Query 163477 TCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAG 163536 | |||||| | | || ||||| | || | || || || |||| ||| Sbjct 14744 ------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691 Query 163537 TCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCA 163596 || || | ||||||| | |||||||||| |||||||| || || ||||| || || Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631 Query 163597 CATGGCTACTTCGGTCGTTTGATCTTCCAATAT 163629 ||||| || || || || || |||||||||||| Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598 Score = 105 bits (116), Expect = 7e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 163742 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACG 163801 |||| |||||||| || | ||||| |||| |||||||| | || |||||||| || Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537 Query 163802 TGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 163861 | |||||||| || || |||||||||||||||||||| ||||| || | ||||||| Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477 Query 163862 CACTCGATCTTGCTGC 163877 | ||||| || || || Sbjct 14476 CTCTCGACCTAGCAGC 14461 >seq8546 Length=31398 Score = 203 bits (224), Expect = 4e-47 Identities = 314/446 (70%), Gaps = 8/446 (2%) Strand=Plus/Minus Query 163435 CATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATGGCAGT 163494 || ||||| || || |||||||| ||||| || || | ||| | |||||||| | Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 163495 CTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTATGGTTAC 163554 | || |||||| | || | || || || |||| | | || || | |||||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 163555 AAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGT 163614 | ||||||||||| || || || | || || || || || ||||| || || || || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 163615 TTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTT--CACTTCTTCCTGGCAG 163672 || |||||||||||||| |||||| | | |||| || |||||| | | | Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAAC--GATTCTCATTCTTTACATTTCTTCTTAGTTG 12967 Query 163673 CATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTCAACC 163732 | |||||||| || || || ||||||||| | | || | || || |||||||| | || Sbjct 12966 CTTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCC 12907 Query 163733 TCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACACTT 163792 | ||||| ||||| |||||||| || | ||||| |||| |||||||| || || Sbjct 12906 TAAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT----AATTATT 12851 Query 163793 GGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCAC 163852 |||| || | ||||||||||| || |||||||||||||||||||| ||||| || | Sbjct 12850 GGGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 12791 Query 163853 ACAACTTCCCACTCGATCTTGCTGCT 163878 | ||||||| || || || |||||| Sbjct 12790 ATAACTTCCATCTAGACCTAGCTGCT 12765 >seq25216 Length=8180 Score = 156 bits (172), Expect = 5e-33 Identities = 178/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 163252 TTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCA 163311 || ||||||||||| ||||| | | || || || || |||||||| || || | || Sbjct 7256 TTTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCT 7197 Query 163312 GTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATC 163371 || ||| || |||| || | |||||||| || ||||| | ||||| || || || Sbjct 7196 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 7137 Query 163372 TCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCC 163431 ||||| || ||||||| |||| |||| ||||| | |||||||||||||| |||||||| Sbjct 7136 TCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCA 7077 Query 163432 TTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATGG 163490 || || ||||| || || | |||||| ||||| || || || ||| || |||||||| Sbjct 7076 TTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 7018 >seq29420 Length=7120 Score = 140 bits (154), Expect = 4e-28 Identities = 247/360 (69%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 163005 TGCTCCCCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGG 163064 |||||| || || || ||||| || || ||||| || || |||| || || | | || Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474 Query 163065 CAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTA 163124 ||||| || |||||||||| || |||| |||| || || ||| | ||||| || Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534 Query 163125 TCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACT 163184 ||| || |||||||| ||||| ||||||| ||| | || || |||||||||| | || Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594 Query 163185 CGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTC 163244 || || |||||| | | || | | || ||||| ||||| ||||||||| Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654 Query 163245 ATATCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGC 163304 | || | ||||||||||| ||||| ||| || || || | |||||||| || || Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714 Query 163305 ATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACT 163364 | | | ||| || |||| || | |||||||| || ||||| | ||||| || Sbjct 3715 TACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774 >seq59 Length=339703 Score = 140 bits (154), Expect = 4e-28 Identities = 185/257 (72%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 163345 TTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAA 163404 || ||||| | ||||| || || | ||||| || ||||||| |||| |||| ||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 163405 GCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGT 163464 || |||||||||||||| |||||||| || || ||||| | || |||||||| ||||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 163465 GGATCACTCTTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACG 163524 || || || ||| | |||||||| | | || ||||| | | | || || Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 163525 ACTGAAACTGAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAAC 163584 || |||| ||| || || | ||||||| |||||||||||| |||||||| || || Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 163585 ATCGTTGCAGCACATGG 163601 || || || | ||||| Sbjct 52549 ATTGTAGCTACTCATGG 52565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560480891728720