Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4197 167 4e-36 seq270 129 1e-24 >seq4197 Length=36674 Score = 167 bits (184), Expect = 4e-36 Identities = 489/738 (66%), Gaps = 24/738 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| ||||| ||||| ||||||||||| || | |||||||| ||| |||||| ||| Sbjct 23131 CTGGTAATCCCCAACTCTCTTCTCAAAGAAATTGGCCTTCCCCTGCAAGGAGATGAGCTC 23190 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCC-ATCTGTTCCAGCA 47957 ||| | || ||||| | |||||| | || || | | |||| | Sbjct 23191 CATCCAATCAAATGGGTTTGACACACCGTACACCT-TCCCACATCCTAGCGCAGCCAGAA 23249 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | |||||| || |||| ||||||| |||||| |||||| ||||| | | Sbjct 23250 GCCTATCCGCCACAAACTCTATGTATTGGCTCATGAGCACACCGTTCATCCCTATCAACG 23309 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||||| || | | |||||| ||||||||| ||| |||||| || || | Sbjct 23310 CGCAGGGCAGCGCGTCGCACACGAACTCCCTCTCTATCTCCACCGCTTCCTTTACTAT-T 23368 Query 48078 GCTT-AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 ||| ||| || ||| | | ||||| | ||| || |||||| | || || Sbjct 23369 CCTTGAACCCGTTCCTCCGGAAGCTTGTTCCTCAGTAACT---CATAGATGAGACAAGCG 23425 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 || || | ||||||||||||||| ||| ||| | | |||| |||||| || |||||| Sbjct 23426 AAATCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAGTCCAGGC 23485 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 || | || | || ||| ||||| || || || ||| |||||||||||||| || Sbjct 23486 ATCAGTCCTCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAGATACCT 23545 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTT--GTCTGAGATCC 48314 || || || || || | | ||| |||| || |||| | | | |||| Sbjct 23546 TCAACGCAGGCAAAAGCAACTATGCGCTCAGCGAAGGA----TTCTGCGGAATCA-ATCC 23600 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 || ||||||||||| || ||||| ||| || | || || ||||| |||||| Sbjct 23601 AGCGGAGCGCCCAGTCGGCTTTCTTGGTGACAGCGGGAACAGTATCGATGGCGTGGAAGA 23660 Query 48375 GC---TTCTTGCACTCACCTGCGTC-CGCAACATAGGTAGTGAGCAGCTTTGCGTACATC 48430 || | ||| ||| | ||| || | || ||| ||| || |||||| Sbjct 23661 GCCGGTGCTT---CTCGGACGAGTCTCGAATCAG-GGTTTCGAGAAGAAGGCTGTACATT 23716 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 |||||||| | |||||| || ||||||||||| ||||||||||| | ||||| | ||| Sbjct 23717 TCAGAGTGGATATTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGAAACC 23776 Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 || | || | ||| ||| ||||| |||||||| || ||||| || || || || Sbjct 23777 TGGATCTCCTTCATGAACCTC-CCAGCGAGATTCTCGAGCACGATCCCGTCGGAGGCTGC 23835 Query 48550 AAAGAAGGCAAGGACATG 48567 |||||||| |||||||| Sbjct 23836 GAAGAAGGCGAGGACATG 23853 >seq270 Length=105985 Score = 129 bits (142), Expect = 1e-24 Identities = 558/864 (65%), Gaps = 39/864 (5%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || ||||| ||||||||||| || |||||||| | || ||||| || Sbjct 91503 CTGGTAGTCGCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAATGAGATAAGATC 91562 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCA 47957 ||| | || ||||||||| |||||| | || |||| | ||| || Sbjct 91563 CATCCAATCAAACGGGTTGGGTACACCGTACACCT-TCCCACACCCAAGCGCAACCAACA 91621 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | ||| || || |||| ||||| | ||| || | ||||| || || | Sbjct 91622 GCCTATCAGCTACAAACTCAATGTACTCACTCATCAGTTTTCCATTCATCCCAATCA--- 91678 Query 48018 ACACG---GGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074 || || |||| || | | |||||||||||| |||| ||| || || | ||| | Sbjct 91679 ACGCGCATGGCAGCGCGTCACAAATAAACTCCTTCTCGATCTCCACCGCATCTCTCACGA 91738 Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 || || || ||| || | | || || |||| | | |||| || || | Sbjct 91739 TCCCTTTTACTCGGTCTTCAGGAAGCTTCTTCTTCAGGATTTCG---TAGATCAAACAAG 91795 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 |||| || | ||| ||||||||||| | | || ||| ||||||||||| | || | Sbjct 91796 CAAAATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAGGTCAATCCTG 91855 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || | | ||| |||||||| | || ||| || ||||||||||||| Sbjct 91856 GCATCAGACCGCGTTTTTTTAGCCAGAATACGGCGCAGAAGCTTCCGGAGAAGAAGATGC 91915 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 | ||||| ||||| ||| || | ||| |||| || || || ||||| Sbjct 91916 CTTCCACGCAAGCGAAAGCGACGATTCGCTCGGCGAAGGATTCGGAGGAATC---GATCC 91972 Query 48315 AG-GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 | | ||| ||||| | |||||||| ||| | || || || || || || ||||| Sbjct 91973 ATCGCAAG-GCCCACTGCGCCTTCTTTGTGACGGCAGGGATGGTGTCAATTGCGTGGAAG 92031 Query 48374 AGC---TTCTTGCACTCACCTGCGTCCGCAACATAG-GT---AGTGAGCAGCTTTGCGTA 48426 || | ||| ||| | | |||| || ||| || | |||| || | ||| Sbjct 92032 AGGCGGTGCTT---CTCGTCGGAGTCCCGAAT-TAGCGTTTGAATGAGGAGGCT---GTA 92084 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486 ||||||||| || | ||||| | ||||||||||| || |||||||| | ||||| | Sbjct 92085 CATCTCAGAATGGATGTTCTCAACTGCGATCTGGAAACCATAGAAGGCGCGAGCCTCGGA 92144 Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAG 48545 ||||| | || | ||| || ||| || || ||||| || || || || || | Sbjct 92145 GACCTGGATATCATTCATGAACCT-TCCGGCGAGGTTCTCGAGAACGATTCCGTCGGAGG 92203 Query 48546 CAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCC 48605 | || |||||||| ||||| || | |||||| ||||| | ||| |||| || | Sbjct 92204 CGGCGAAGAAGGCGAGGACGTGAGAGATGAAATGTTTCTCGTCGGTGGTTAGAG--TTTC 92261 Query 48606 AGCCCTGT-ACG----TCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660 ||| || ||| |||| || || || || || | ||||||||||| || Sbjct 92262 CTCCCAGTGACGGATATCTTGAGTTAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTC 92321 Query 48661 TGCTTTTTTGTACATGCCCCATAT 48684 ||||| |||||||| |||| || Sbjct 92322 GGCTTTCTTGTACATCTCCCAGAT 92345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927019593448960