Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_019516.1
Length=161440
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 423 2e-113
seq29420 244 1e-59
seq25216 210 2e-49
seq8546 192 6e-44
seq59 174 2e-38
seq3927 158 1e-33
seq8630 105 7e-18
seq4835 86.0 6e-12
seq3809 86.0 6e-12
>seq5412
Length=31808
Score = 423 bits (468), Expect = 2e-113
Identities = 512/693 (74%), Gaps = 8/693 (1%)
Strand=Plus/Minus
Query 8294 GGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGCTTCATTACCGCA 8352
||||||||||| | ||||| || ||| || ||| |||| ||| || |||| ||
Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACC-TTATTGACCGCAACATCCGTATTTATTATAGCC 15225
Query 8353 TTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTC 8412
||| ||||||||||||| || || || || || || || ||||| ||| |||||||||
Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165
Query 8413 ATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTC 8472
| ||||| ||||| || ||||||||||| || ||| | | | || || || |
Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105
Query 8473 CACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCT 8532
||||| || || || |||||||| || ||| ||||||| ||| | ||||| ||||||||
Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045
Query 8533 TACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGG 8592
|| |||| | ||||| |||||| | ||||| || | ||| ||||||||||| |||
Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985
Query 8593 GAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTT 8652
|||||| || ||| || || ||||| |||||||| |||||| || || || ||||||
Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925
Query 8653 GCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGT 8712
|| ||||| ||||||| ||| | |||| || ||||| |||| || ||| |||||
Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865
Query 8713 ATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAAC 8772
|||||||| || || || ||||| ||||||| ||| |||| ||||||||||||||||||
Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805
Query 8773 ATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTT 8832
||||| |||||||| || |||||| | || || |||||||| |||| ||| || || |
Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGG--CTACCTAT 14747
Query 8833 TCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAG 8892
|| | ||||||||| | || || || || | | || ||||| |||| ||
Sbjct 14746 TC----AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691
Query 8893 TCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCT 8952
||| || | || |||| | | |||||||| || || ||||| || || || || |||
Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631
Query 8953 CATGGCTACTTTGGTCGCTTGATCTTCCAATAT 8985
||||| || ||||| || || ||||||||||||
Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598
>seq29420
Length=7120
Score = 244 bits (270), Expect = 1e-59
Identities = 272/363 (75%), Gaps = 0/363 (0%)
Strand=Plus/Plus
Query 8358 TGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTA 8417
|| ||||||||| || || || || || || || ||||| ||| |||||||||| | |
Sbjct 3412 TGTTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCA 3471
Query 8418 CGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTT 8477
||| ||||| || |||||||||| || |||| | ||| || || || | |||||
Sbjct 3472 CGGAAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTT 3531
Query 8478 CTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCA 8537
|| || || |||||||| || ||| ||||||| ||| | ||||| ||||||||||| |
Sbjct 3532 TTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGA 3591
Query 8538 GCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAACT 8597
||| ||||| |||||| | ||||| || | ||| ||||||||||| ||||||||
Sbjct 3592 GCTAAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACT 3651
Query 8598 TTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGC 8657
| || ||| || || ||||| |||||||| |||||| || || | ||||||||| ||
Sbjct 3652 TAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGC 3711
Query 8658 TGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCC 8717
|||| || || | ||| | |||| || |||||||||| || ||||||||||||||
Sbjct 3712 TGCTACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCC 3771
Query 8718 TCT 8720
|||
Sbjct 3772 TCT 3774
>seq25216
Length=8180
Score = 210 bits (232), Expect = 2e-49
Identities = 191/241 (79%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 8609 TTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTG 8668
|||| ||||| |||||||| | |||| || || ||||||||||| |||||| ||||||
Sbjct 7255 TTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTG 7196
Query 8669 TATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCT 8728
| ||| | |||| || |||||||||| || ||||||||||||||||| || || |
Sbjct 7195 TTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTT 7136
Query 8729 CCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCT 8788
| ||||| ||||||| ||| |||| |||||| |||||||||||||||| |||||||| |
Sbjct 7135 CTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCAT 7076
Query 8789 TCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTT 8848
| |||||| | || || | |||||| |||||||| || || || || ||||||||||
Sbjct 7075 TTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTT 7016
Query 8849 C 8849
|
Sbjct 7015 C 7015
>seq8546
Length=31398
Score = 192 bits (212), Expect = 6e-44
Identities = 309/444 (70%), Gaps = 4/444 (1%)
Strand=Plus/Minus
Query 8791 CACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTTCA 8850
|||||| | || || |||||||| |||||||| || | || | |||||||||||
Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145
Query 8851 CTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATGGCTAC 8910
| || || ||| || | | || ||||| |||| | || || | || |||
Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085
Query 8911 AAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGGTCGC 8970
| || |||||||| ||||||||| | || ||||| || |||||||| || ||||| ||
Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025
Query 8971 TTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGCTGCG 9030
|| |||||||||||||| ||| ||| ||||| || ||||||||| | | |||
Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965
Query 9031 TGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAACCTC 9090
|||||||| || || || |||||||| | | || | || ||||| || | |||
Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905
Query 9091 AATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACACCTGG 9150
|| |||||||| |||||||| || | | || | ||||| || || || |||
Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT----AATTATTGG 12849
Query 9151 GCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAACGCACAC 9210
|| || | |||||||||| || ||||||||||| ||||| ||| | || || ||
Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 12789
Query 9211 AACTTCCCGCTTGACCTTGCGGCT 9234
||||||| || ||||| || |||
Sbjct 12788 AACTTCCATCTAGACCTAGCTGCT 12765
>seq59
Length=339703
Score = 174 bits (192), Expect = 2e-38
Identities = 194/259 (75%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 8699 CGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCC 8758
|||| ||||||||||||||||| || | || ||||| ||||||| ||| |||| ||||
Sbjct 52307 CGTTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCC 52366
Query 8759 AGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCG 8818
| ||||||||||||||||| |||||||| || |||||| | | || |||||||| ||||
Sbjct 52367 ATGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCG 52426
Query 8819 GCGGATCTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGA 8878
|||| || || || | ||||||||||| | || || || || || | || |
Sbjct 52427 GCGGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAA 52486
Query 8879 CCACCGAAACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACA 8938
|||| |||| || ||| || | || |||| ||| |||||||| || || ||||| |
Sbjct 52487 CCACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATA 52546
Query 8939 ACATTGTTGCCGCTCATGG 8957
| ||||| || |||||||
Sbjct 52547 ATATTGTAGCTACTCATGG 52565
>seq3927
Length=49767
Score = 158 bits (174), Expect = 1e-33
Identities = 185/247 (75%), Gaps = 5/247 (2%)
Strand=Plus/Plus
Query 10103 TGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTT 10162
||| ||||||| || ||||| || || || | |||| || ||||||||||| || |||
Sbjct 26007 TGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATTT 26066
Query 10163 GAGCTGGCGAGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATT 10222
|| || || ||| || | | |||||||| ||||| || || || | ||| || |||
Sbjct 26067 GAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATAGCATTATTTGGTCCAATT 26126
Query 10223 GCTGTTTTTG--TCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTG 10280
|| |||||| || |||||| || || |||||||| || |||||| ||||||||||||
Sbjct 26127 GCCATTTTTGTTTCGGTGTTT--CTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTG 26184
Query 10281 CGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATA 10340
|||| ||||| || || || | || || || ||| | ||||| | || || |||||||
Sbjct 26185 CGCCTAGTTTTGGTGTAGCATCTATATT-CGATTCATCCTCTTTTTTCAAGGGTTTCATA 26243
Query 10341 ATTGGAC 10347
|||||||
Sbjct 26244 ATTGGAC 26250
>seq8630
Length=23577
Score = 105 bits (116), Expect = 7e-18
Identities = 104/133 (78%), Gaps = 1/133 (1%)
Strand=Plus/Plus
Query 8905 GGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTT-GCCGCTCATGGCTACTT 8963
|| ||||| || |||||||| ||||||||||| || || || || |||||||| || ||
Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556
Query 8964 TGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCT 9023
|||||| || |||||||||||||| ||| ||||||||| | || |||||||| |
Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616
Query 9024 CGCTGCGTGGCCT 9036
|| || ||||||
Sbjct 7617 AGCCGCTTGGCCT 7629
>seq4835
Length=43218
Score = 86.0 bits (94), Expect = 6e-12
Identities = 102/138 (74%), Gaps = 8/138 (6%)
Strand=Plus/Plus
Query 8905 GGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTT 8964
|| |||| || |||||||| ||||||||||| || || || || |||||||| || |||
Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118
Query 8965 GGTCGCTTGATCTTCCAATATGCATCTTTTAACAA------TTCTAGAAGCTTGCATTTC 9018
|| | || |||||||||||||| ||| ||||| |||| || || ||||||
Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAA--TTACATTTC 9176
Query 9019 TTCCTCGCTGCGTGGCCT 9036
|| | || || ||||||
Sbjct 9177 TTATTAGCCGCTTGGCCT 9194
>seq3809
Length=52889
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/139 (74%), Gaps = 1/139 (1%)
Strand=Plus/Plus
Query 10244 CTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTT-GCGCCGAGTTTCGGCGTCGCGGC 10302
|| || | |||||| || ||| || |||| || ||| ||||| ||||| || | || ||
Sbjct 21204 CTAATTTGTCCACTAGGTCAGCCTGGTTGTTTTTTTTGCGCCAAGTTTTGGTATAGCAGC 21263
Query 10303 GATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCA 10362
| || || ||| | |||| | || || |||||||||||||| | ||||| | |||
Sbjct 21264 TAAATTTCGATTCATCCTCTCATTTCAAGGGTTTCATAATTGGACATTGAATCCATGCCA 21323
Query 10363 TATGATGGGAGTTGCTGGT 10381
|||||||||||| || |||
Sbjct 21324 TATGATGGGAGTGGCCGGT 21342
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 513977693136000
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