Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq5412 423 2e-113 seq29420 244 1e-59 seq25216 210 2e-49 seq8546 192 6e-44 seq59 174 2e-38 seq3927 158 1e-33 seq8630 105 7e-18 seq4835 86.0 6e-12 seq3809 86.0 6e-12 >seq5412 Length=31808 Score = 423 bits (468), Expect = 2e-113 Identities = 512/693 (74%), Gaps = 8/693 (1%) Strand=Plus/Minus Query 8294 GGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGCTTCATTACCGCA 8352 ||||||||||| | ||||| || ||| || ||| |||| ||| || |||| || Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACC-TTATTGACCGCAACATCCGTATTTATTATAGCC 15225 Query 8353 TTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTC 8412 ||| ||||||||||||| || || || || || || || ||||| ||| ||||||||| Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165 Query 8413 ATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTC 8472 | ||||| ||||| || ||||||||||| || ||| | | | || || || | Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105 Query 8473 CACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCT 8532 ||||| || || || |||||||| || ||| ||||||| ||| | ||||| |||||||| Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045 Query 8533 TACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGG 8592 || |||| | ||||| |||||| | ||||| || | ||| ||||||||||| ||| Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985 Query 8593 GAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTT 8652 |||||| || ||| || || ||||| |||||||| |||||| || || || |||||| Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925 Query 8653 GCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGT 8712 || ||||| ||||||| ||| | |||| || ||||| |||| || ||| ||||| Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865 Query 8713 ATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAAC 8772 |||||||| || || || ||||| ||||||| ||| |||| |||||||||||||||||| Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805 Query 8773 ATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTT 8832 ||||| |||||||| || |||||| | || || |||||||| |||| ||| || || | Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGG--CTACCTAT 14747 Query 8833 TCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAG 8892 || | ||||||||| | || || || || | | || ||||| |||| || Sbjct 14746 TC----AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691 Query 8893 TCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCT 8952 ||| || | || |||| | | |||||||| || || ||||| || || || || ||| Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631 Query 8953 CATGGCTACTTTGGTCGCTTGATCTTCCAATAT 8985 ||||| || ||||| || || |||||||||||| Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598 >seq29420 Length=7120 Score = 244 bits (270), Expect = 1e-59 Identities = 272/363 (75%), Gaps = 0/363 (0%) Strand=Plus/Plus Query 8358 TGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTA 8417 || ||||||||| || || || || || || || ||||| ||| |||||||||| | | Sbjct 3412 TGTTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCA 3471 Query 8418 CGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTT 8477 ||| ||||| || |||||||||| || |||| | ||| || || || | ||||| Sbjct 3472 CGGAAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTT 3531 Query 8478 CTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCA 8537 || || || |||||||| || ||| ||||||| ||| | ||||| ||||||||||| | Sbjct 3532 TTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGA 3591 Query 8538 GCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAACT 8597 ||| ||||| |||||| | ||||| || | ||| ||||||||||| |||||||| Sbjct 3592 GCTAAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACT 3651 Query 8598 TTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGC 8657 | || ||| || || ||||| |||||||| |||||| || || | ||||||||| || Sbjct 3652 TAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGC 3711 Query 8658 TGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCC 8717 |||| || || | ||| | |||| || |||||||||| || |||||||||||||| Sbjct 3712 TGCTACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCC 3771 Query 8718 TCT 8720 ||| Sbjct 3772 TCT 3774 >seq25216 Length=8180 Score = 210 bits (232), Expect = 2e-49 Identities = 191/241 (79%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 8609 TTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTG 8668 |||| ||||| |||||||| | |||| || || ||||||||||| |||||| |||||| Sbjct 7255 TTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTG 7196 Query 8669 TATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCT 8728 | ||| | |||| || |||||||||| || ||||||||||||||||| || || | Sbjct 7195 TTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTT 7136 Query 8729 CCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCT 8788 | ||||| ||||||| ||| |||| |||||| |||||||||||||||| |||||||| | Sbjct 7135 CTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCAT 7076 Query 8789 TCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTT 8848 | |||||| | || || | |||||| |||||||| || || || || |||||||||| Sbjct 7075 TTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTT 7016 Query 8849 C 8849 | Sbjct 7015 C 7015 >seq8546 Length=31398 Score = 192 bits (212), Expect = 6e-44 Identities = 309/444 (70%), Gaps = 4/444 (1%) Strand=Plus/Minus Query 8791 CACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTTCA 8850 |||||| | || || |||||||| |||||||| || | || | ||||||||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 8851 CTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATGGCTAC 8910 | || || ||| || | | || ||||| |||| | || || | || ||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 8911 AAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGGTCGC 8970 | || |||||||| ||||||||| | || ||||| || |||||||| || ||||| || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 8971 TTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGCTGCG 9030 || |||||||||||||| ||| ||| ||||| || ||||||||| | | ||| Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965 Query 9031 TGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAACCTC 9090 |||||||| || || || |||||||| | | || | || ||||| || | ||| Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905 Query 9091 AATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACACCTGG 9150 || |||||||| |||||||| || | | || | ||||| || || || ||| Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT----AATTATTGG 12849 Query 9151 GCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAACGCACAC 9210 || || | |||||||||| || ||||||||||| ||||| ||| | || || || Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 12789 Query 9211 AACTTCCCGCTTGACCTTGCGGCT 9234 ||||||| || ||||| || ||| Sbjct 12788 AACTTCCATCTAGACCTAGCTGCT 12765 >seq59 Length=339703 Score = 174 bits (192), Expect = 2e-38 Identities = 194/259 (75%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 8699 CGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCC 8758 |||| ||||||||||||||||| || | || ||||| ||||||| ||| |||| |||| Sbjct 52307 CGTTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCC 52366 Query 8759 AGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCG 8818 | ||||||||||||||||| |||||||| || |||||| | | || |||||||| |||| Sbjct 52367 ATGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCG 52426 Query 8819 GCGGATCTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGA 8878 |||| || || || | ||||||||||| | || || || || || | || | Sbjct 52427 GCGGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAA 52486 Query 8879 CCACCGAAACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACA 8938 |||| |||| || ||| || | || |||| ||| |||||||| || || ||||| | Sbjct 52487 CCACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATA 52546 Query 8939 ACATTGTTGCCGCTCATGG 8957 | ||||| || ||||||| Sbjct 52547 ATATTGTAGCTACTCATGG 52565 >seq3927 Length=49767 Score = 158 bits (174), Expect = 1e-33 Identities = 185/247 (75%), Gaps = 5/247 (2%) Strand=Plus/Plus Query 10103 TGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTT 10162 ||| ||||||| || ||||| || || || | |||| || ||||||||||| || ||| Sbjct 26007 TGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATTT 26066 Query 10163 GAGCTGGCGAGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATT 10222 || || || ||| || | | |||||||| ||||| || || || | ||| || ||| Sbjct 26067 GAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATAGCATTATTTGGTCCAATT 26126 Query 10223 GCTGTTTTTG--TCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTG 10280 || |||||| || |||||| || || |||||||| || |||||| |||||||||||| Sbjct 26127 GCCATTTTTGTTTCGGTGTTT--CTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTG 26184 Query 10281 CGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATA 10340 |||| ||||| || || || | || || || ||| | ||||| | || || ||||||| Sbjct 26185 CGCCTAGTTTTGGTGTAGCATCTATATT-CGATTCATCCTCTTTTTTCAAGGGTTTCATA 26243 Query 10341 ATTGGAC 10347 ||||||| Sbjct 26244 ATTGGAC 26250 >seq8630 Length=23577 Score = 105 bits (116), Expect = 7e-18 Identities = 104/133 (78%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 8905 GGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTT-GCCGCTCATGGCTACTT 8963 || ||||| || |||||||| ||||||||||| || || || || |||||||| || || Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 8964 TGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCT 9023 |||||| || |||||||||||||| ||| ||||||||| | || |||||||| | Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616 Query 9024 CGCTGCGTGGCCT 9036 || || |||||| Sbjct 7617 AGCCGCTTGGCCT 7629 >seq4835 Length=43218 Score = 86.0 bits (94), Expect = 6e-12 Identities = 102/138 (74%), Gaps = 8/138 (6%) Strand=Plus/Plus Query 8905 GGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTT 8964 || |||| || |||||||| ||||||||||| || || || || |||||||| || ||| Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118 Query 8965 GGTCGCTTGATCTTCCAATATGCATCTTTTAACAA------TTCTAGAAGCTTGCATTTC 9018 || | || |||||||||||||| ||| ||||| |||| || || |||||| Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAA--TTACATTTC 9176 Query 9019 TTCCTCGCTGCGTGGCCT 9036 || | || || |||||| Sbjct 9177 TTATTAGCCGCTTGGCCT 9194 >seq3809 Length=52889 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/139 (74%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 10244 CTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTT-GCGCCGAGTTTCGGCGTCGCGGC 10302 || || | |||||| || ||| || |||| || ||| ||||| ||||| || | || || Sbjct 21204 CTAATTTGTCCACTAGGTCAGCCTGGTTGTTTTTTTTGCGCCAAGTTTTGGTATAGCAGC 21263 Query 10303 GATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCA 10362 | || || ||| | |||| | || || |||||||||||||| | ||||| | ||| Sbjct 21264 TAAATTTCGATTCATCCTCTCATTTCAAGGGTTTCATAATTGGACATTGAATCCATGCCA 21323 Query 10363 TATGATGGGAGTTGCTGGT 10381 |||||||||||| || ||| Sbjct 21324 TATGATGGGAGTGGCCGGT 21342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513977693136000