Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq87 89.7 4e-13 seq9434 84.2 2e-11 seq4209 84.2 2e-11 >seq87 Length=177581 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || ||||| || || || ||| || ||| Sbjct 54665 ATGCAAATCTTTGTGAAAACCCTCACTGGTAAGACAATAACTCTTGAAGTTGAGAGCTCA 54606 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || ||||| ||||||| || || ||||| | || ||| || Sbjct 54605 GACACCATTGACAATGTCAAGGCAAAAATCCAAGATAAGGAGGGTATCCCGCCAGACCAG 54546 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||||| ||||||||||| || ||| | |||||| ||| | || || |||||| Sbjct 54545 CAAAGACTCATCTTTGCGGGTAAGCAACTCGAAGATGGGCGTACTCTCGCAGACTATAAC 54486 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 ||||| || || || ||||||||| Sbjct 54485 ATTCAGAAGGAGTCCACTCTGCAC 54462 >seq9434 Length=50679 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| ||||| ||||| || |||| || || || || || ||| || ||| Sbjct 45849 ATGCAGATATTCGTAAAGACCCTAACTGGCAAGACTATCACACTTGAAGTCGAGAGCTCA 45790 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || |||| || || | || ||||| |||||| | ||| |||||| Sbjct 45789 GACACAATTGACAATGTCAAAGCTAAGATTCAA-GACAAGGAGGGAATTCCCCCAGATCA 45731 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| | |||||||| ||||| ||| | |||||| | || | || |||||||| Sbjct 45730 GCAGAGGTTGATCTTTGCCGGCAAGCAACTTGAAGATGGAAGGACCCTTGCAGATTATAA 45671 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| || || ||||| || || ||| |||| Sbjct 45670 CATCCAGAAGGAATCCACCCTCCACTTGGT 45641 >seq4209 Length=73032 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| |||||||| || || || ||||| ||| || || ||| Sbjct 233 ATGCAGATCTTTGTGAAAACATTGACCGGAAAGACCATAACCCTAGAGGTTGAGAGCTCA 174 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || ||||| || ||| ||||| || || | || ||| || Sbjct 173 GACACCATAGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAG 114 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | || |||||||||||||| || | || ||| || ||| | || || |||||| Sbjct 113 CAGCGTCTCATCTTTGCGGGCAAGCAGCTCGAGGATGGTAGAACCCTTGCTGACTATAAC 54 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || || || || |||||||| ||| |||| Sbjct 53 ATCCAGAAGGAGTCTACTCTCCACCTGGT 25 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423395272008126