Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_020486.1
Length=171211
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 381 6e-101
seq8546 241 1e-58
seq29420 214 2e-50
seq25216 188 8e-43
seq59 185 9e-42
seq3927 122 9e-23
seq2610 120 3e-22
seq78858 84.2 2e-11
>seq5412
Length=31808
Score = 381 bits (422), Expect = 6e-101
Identities = 501/692 (72%), Gaps = 8/692 (1%)
Strand=Plus/Minus
Query 160922 GGTTCGGCGTCCTGATGATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCC 160980
|||| ||||| |||||||||| ||| | | || || || || || || || |||
Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225
Query 160981 TTCGTTGGTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTC 161040
||| ||| |||||| || || || || || || ||||||||||| || ||| || ||
Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165
Query 161041 ATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTG 161100
| || |||||||| || ||||||||||| |||| | ||| | ||||| ||| ||
Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105
Query 161101 CACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCT 161160
||||| || || || |||||||| ||| | | || |||||| | ||||| ||||||||
Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045
Query 161161 TTCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGG 161220
| | || |||| || |||||| | |||| | | |||||||||||||||||||
Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985
Query 161221 GAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTC 161280
|||||| || ||||||||| ||||| ||||||||| || || || || || |||||
Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925
Query 161281 GCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCA 161340
|| | || | ||| || ||| || |||| || | ||| |||| || ||| |||
Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865
Query 161341 ATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 161400
|||||||| || || |||||||| ||||||| |||| |||| ||||| || |||||||||
Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805
Query 161401 ATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTC 161460
|| || |||||||| || || ||| | |||||||| ||||| || | ||| | || |||
Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745
Query 161461 AGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAG 161520
|| ||| ||||| |||| ||||| || | | |||||||| ||||| ||
Sbjct 14744 AG------GCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691
Query 161521 TCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCC 161580
|| || | ||||||| | | |||||||| |||||||| || || ||||| |||||
Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631
Query 161581 CACGGGTACTTCGGTCGTCTGATTTTCCAATA 161612
|| || || || || || | || ||||||||
Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATA 14599
Score = 102 bits (112), Expect = 9e-17
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 161726 TCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGGGCAGACG 161785
|||| |||||||| ||| | ||||||||||| ||| || || || || ||||| ||
Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537
Query 161786 TTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCACAACTTCC 161845
|| | ||||| || ||||| |||||||| ||||| || || ||||||| |||||||
Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477
Query 161846 CTCTTGACCTTGCTGC 161861
|||| ||||| || ||
Sbjct 14476 CTCTCGACCTAGCAGC 14461
>seq8546
Length=31398
Score = 241 bits (266), Expect = 1e-58
Identities = 320/444 (72%), Gaps = 4/444 (1%)
Strand=Plus/Minus
Query 161419 CATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCG 161478
|| ||| | |||||||| ||||| || ||||| || | ||||||| ||||| |||||
Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145
Query 161479 CTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGGTTAC 161538
|||| |||||| || | | |||||||| ||||| | ||| || | ||||||
Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085
Query 161539 AAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGGTCGT 161598
| || |||||||| || || || | || || || ||||| || || || || || ||
Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025
Query 161599 CTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGCTGCT 161658
| || |||||||| ||| |||||| | || | || | || |||||| | | ||||
Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965
Query 161659 TGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTG 161718
|||||||| || || || ||||| ||| | | || | || || |||||||| | |||
Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905
Query 161719 AATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGG 161778
|| || ||||| |||||||| ||| | ||||||||||| ||| || || | |||
Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTA----TTGG 12849
Query 161779 GCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCAC 161838
|| || || | ||||| ||| ||||| |||||||| ||||| || || ||||||||
Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 12789
Query 161839 AACTTCCCTCTTGACCTTGCTGCT 161862
||||||| ||| ||||| ||||||
Sbjct 12788 AACTTCCATCTAGACCTAGCTGCT 12765
>seq29420
Length=7120
Score = 214 bits (236), Expect = 2e-50
Identities = 265/363 (73%), Gaps = 0/363 (0%)
Strand=Plus/Plus
Query 160986 TGGTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTA 161045
|| |||||| || || || || || || ||||||||||| || |||| || || | |
Sbjct 3412 TGTTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCA 3471
Query 161046 TGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTT 161105
|||||||| || |||||||||| |||| || ||||| ||||| ||| |||||||
Sbjct 3472 CGGAAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTT 3531
Query 161106 CTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCA 161165
|| || || |||||||| ||| | | || |||||| | ||||| |||||||||| |
Sbjct 3532 TTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGA 3591
Query 161166 ACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACT 161225
|| ||| || |||||| | |||| | | ||||||||||||||||||||||||
Sbjct 3592 GCTAAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACT 3651
Query 161226 TTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGC 161285
| || ||||||||| ||||| ||||||||| || || || || | |||||| || ||
Sbjct 3652 TAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGC 3711
Query 161286 AGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCC 161345
|| | | | | ||| || |||| || | |||||||| || ||||||| |||||
Sbjct 3712 TGCTACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCC 3771
Query 161346 TCT 161348
|||
Sbjct 3772 TCT 3774
>seq25216
Length=8180
Score = 188 bits (208), Expect = 8e-43
Identities = 213/284 (75%), Gaps = 1/284 (0%)
Strand=Plus/Minus
Query 161239 GGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTG 161298
|| ||||| ||||||||| | || || || |||||||| || || || | ||| ||
Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194
Query 161299 TTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCT 161358
||| || |||| || | |||||||| || ||||||| |||||||| || || |||
Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134
Query 161359 GGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTC 161418
||||| ||||||| |||| |||| ||||| | ||||||||||| || |||||||| ||
Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074
Query 161419 CATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCG 161478
|| ||| | ||||||| ||||| || ||||| || || |||||||| ||||| |||||
Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCT 7014
Query 161479 CTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTC 161522
|||| ||||| | | | || |||||||| |||| || ||
Sbjct 7013 TTGGTAACCTC-GAGTTTGATCAGGAAACCACATAAAATGAATC 6971
>seq59
Length=339703
Score = 185 bits (204), Expect = 9e-42
Identities = 195/257 (76%), Gaps = 0/257 (0%)
Strand=Plus/Plus
Query 161329 TTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAA 161388
|| ||||||| |||||||| || | |||||||| ||||||| |||| |||| |||||
Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368
Query 161389 GCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGC 161448
|| ||||||||||| || |||||||| || || ||| | ||||||| ||||| || |||
Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428
Query 161449 GGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACC 161508
|| || || ||||||| ||||| ||||| |||| ||||| || || | ||||||
Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488
Query 161509 ACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAAC 161568
|| ||||| || || || | ||||||| ||| |||||||| |||||||| || ||
Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548
Query 161569 ATCGTTGCTGCCCACGG 161585
|| || ||| | || ||
Sbjct 52549 ATTGTAGCTACTCATGG 52565
>seq3927
Length=49767
Score = 122 bits (134), Expect = 9e-23
Identities = 177/246 (72%), Gaps = 3/246 (1%)
Strand=Plus/Plus
Query 162405 TGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTT 162464
||||||||||| || ||||| || || |||| ||| |||||||| ||| | || || |||
Sbjct 26007 TGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATTT 26066
Query 162465 GAACTGGCACGA-CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTAT 162523
||||| || ||| || || | | || ||||| ||||| || || || | ||||| ||
Sbjct 26067 GAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATAGCATTATTTGGTCCAAT 26125
Query 162524 TGCTGTATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGC 162583
||| | || ||| || ||||| || ||||| | || || || |||||||| ||
Sbjct 26126 TGCCATTTTTGTTTCGGTGTTTCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGC 26185
Query 162584 ACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAA 162643
|| || || || ||| | || || |||||| | ||||| | |||||||| |||||
Sbjct 26186 GCCTAGTTTTGGTGTAGCATCTATATT-CGATTCATCCTCTTTTTTCAAGGGTTTCATAA 26244
Query 162644 CTGGAC 162649
|||||
Sbjct 26245 TTGGAC 26250
>seq2610
Length=55653
Score = 120 bits (132), Expect = 3e-22
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400
|||||| | ||| |||||||| | || || | || || ||||||||||| || ||
Sbjct 39278 TACATCTTGGACTCAGCTGAGAATGCTGGCTTGGATCTTCCATACTCGTGCCGAGCTGGT 39337
Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460
|||||||| | ||||| || || || | ||||| | || ||||| ||| ||||
Sbjct 39338 GCTTGTTCAACCTGTGCTGGGAAGCTGATTTCTGGATCAGTCGACCAGTCAGACGGGTCC 39397
Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTACA 158520
||||| || ||||||||||| || || | | | |||||||| || | || |||||
Sbjct 39398 TTCCTTGATGATGACCAAATTAATCAGGGCTACGTACTGACTTGCGTCGCGTACCCTACC 39457
Query 158521 AGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACTGTA 158561
| |||||||||||| | ||| |||| |||| ||||| ||
Sbjct 39458 GGAGATTGTGTGATTCATACTCACAAAGAAGGTGAACTCTA 39498
>seq78858
Length=18568
Score = 84.2 bits (92), Expect = 2e-11
Identities = 130/182 (71%), Gaps = 4/182 (2%)
Strand=Plus/Plus
Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176
|||||| | | || |||||| | || ||||||||||||||||| || || || ||
Sbjct 917 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTCGGTTG-TCCGGT 975
Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 162236
|| | || ||||| ||| ||| | ||| | || |||||| |||| || | || ||
Sbjct 976 CTATTGCTCTTTCCGTGTGCGTATTTCGCTGTAGGAGGTTGGTTTACGGGTTCAACCTTT 1035
Query 162237 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTG-AGGGTGCAAACTTTCT 162295
|| || ||||||||||| || | || ||||||||| | | ||| ||||| |||||
Sbjct 1036 GTAACTTCCTGGTATACTCATGGTTTGGCCAGTTCCTATTTGGAAGGCTGCAA--TTTCT 1093
Query 162296 TA 162297
||
Sbjct 1094 TA 1095
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 545093405897040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |