Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq5412 381 6e-101 seq8546 241 1e-58 seq29420 214 2e-50 seq25216 188 8e-43 seq59 185 9e-42 seq3927 122 9e-23 seq2610 120 3e-22 seq78858 84.2 2e-11 >seq5412 Length=31808 Score = 381 bits (422), Expect = 6e-101 Identities = 501/692 (72%), Gaps = 8/692 (1%) Strand=Plus/Minus Query 160922 GGTTCGGCGTCCTGATGATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCC 160980 |||| ||||| |||||||||| ||| | | || || || || || || || ||| Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225 Query 160981 TTCGTTGGTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTC 161040 ||| ||| |||||| || || || || || || ||||||||||| || ||| || || Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165 Query 161041 ATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTG 161100 | || |||||||| || ||||||||||| |||| | ||| | ||||| ||| || Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105 Query 161101 CACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCT 161160 ||||| || || || |||||||| ||| | | || |||||| | ||||| |||||||| Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045 Query 161161 TTCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGG 161220 | | || |||| || |||||| | |||| | | ||||||||||||||||||| Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985 Query 161221 GAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTC 161280 |||||| || ||||||||| ||||| ||||||||| || || || || || ||||| Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925 Query 161281 GCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCA 161340 || | || | ||| || ||| || |||| || | ||| |||| || ||| ||| Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865 Query 161341 ATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 161400 |||||||| || || |||||||| ||||||| |||| |||| ||||| || ||||||||| Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805 Query 161401 ATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTC 161460 || || |||||||| || || ||| | |||||||| ||||| || | ||| | || ||| Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745 Query 161461 AGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAG 161520 || ||| ||||| |||| ||||| || | | |||||||| ||||| || Sbjct 14744 AG------GCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691 Query 161521 TCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCC 161580 || || | ||||||| | | |||||||| |||||||| || || ||||| ||||| Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631 Query 161581 CACGGGTACTTCGGTCGTCTGATTTTCCAATA 161612 || || || || || || | || |||||||| Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATA 14599 Score = 102 bits (112), Expect = 9e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 161726 TCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGGGCAGACG 161785 |||| |||||||| ||| | ||||||||||| ||| || || || || ||||| || Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537 Query 161786 TTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCACAACTTCC 161845 || | ||||| || ||||| |||||||| ||||| || || ||||||| ||||||| Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477 Query 161846 CTCTTGACCTTGCTGC 161861 |||| ||||| || || Sbjct 14476 CTCTCGACCTAGCAGC 14461 >seq8546 Length=31398 Score = 241 bits (266), Expect = 1e-58 Identities = 320/444 (72%), Gaps = 4/444 (1%) Strand=Plus/Minus Query 161419 CATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCG 161478 || ||| | |||||||| ||||| || ||||| || | ||||||| ||||| ||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 161479 CTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGGTTAC 161538 |||| |||||| || | | |||||||| ||||| | ||| || | |||||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 161539 AAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGGTCGT 161598 | || |||||||| || || || | || || || ||||| || || || || || || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 161599 CTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGCTGCT 161658 | || |||||||| ||| |||||| | || | || | || |||||| | | |||| Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965 Query 161659 TGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTG 161718 |||||||| || || || ||||| ||| | | || | || || |||||||| | ||| Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905 Query 161719 AATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGG 161778 || || ||||| |||||||| ||| | ||||||||||| ||| || || | ||| Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTA----TTGG 12849 Query 161779 GCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCAC 161838 || || || | ||||| ||| ||||| |||||||| ||||| || || |||||||| Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 12789 Query 161839 AACTTCCCTCTTGACCTTGCTGCT 161862 ||||||| ||| ||||| |||||| Sbjct 12788 AACTTCCATCTAGACCTAGCTGCT 12765 >seq29420 Length=7120 Score = 214 bits (236), Expect = 2e-50 Identities = 265/363 (73%), Gaps = 0/363 (0%) Strand=Plus/Plus Query 160986 TGGTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTA 161045 || |||||| || || || || || || ||||||||||| || |||| || || | | Sbjct 3412 TGTTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCA 3471 Query 161046 TGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTT 161105 |||||||| || |||||||||| |||| || ||||| ||||| ||| ||||||| Sbjct 3472 CGGAAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTT 3531 Query 161106 CTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCA 161165 || || || |||||||| ||| | | || |||||| | ||||| |||||||||| | Sbjct 3532 TTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGA 3591 Query 161166 ACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACT 161225 || ||| || |||||| | |||| | | |||||||||||||||||||||||| Sbjct 3592 GCTAAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACT 3651 Query 161226 TTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGC 161285 | || ||||||||| ||||| ||||||||| || || || || | |||||| || || Sbjct 3652 TAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGC 3711 Query 161286 AGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCC 161345 || | | | | ||| || |||| || | |||||||| || ||||||| ||||| Sbjct 3712 TGCTACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCC 3771 Query 161346 TCT 161348 ||| Sbjct 3772 TCT 3774 >seq25216 Length=8180 Score = 188 bits (208), Expect = 8e-43 Identities = 213/284 (75%), Gaps = 1/284 (0%) Strand=Plus/Minus Query 161239 GGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTG 161298 || ||||| ||||||||| | || || || |||||||| || || || | ||| || Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194 Query 161299 TTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCT 161358 ||| || |||| || | |||||||| || ||||||| |||||||| || || ||| Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134 Query 161359 GGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTC 161418 ||||| ||||||| |||| |||| ||||| | ||||||||||| || |||||||| || Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074 Query 161419 CATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCG 161478 || ||| | ||||||| ||||| || ||||| || || |||||||| ||||| ||||| Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCT 7014 Query 161479 CTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTC 161522 |||| ||||| | | | || |||||||| |||| || || Sbjct 7013 TTGGTAACCTC-GAGTTTGATCAGGAAACCACATAAAATGAATC 6971 >seq59 Length=339703 Score = 185 bits (204), Expect = 9e-42 Identities = 195/257 (76%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 161329 TTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAA 161388 || ||||||| |||||||| || | |||||||| ||||||| |||| |||| ||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 161389 GCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGC 161448 || ||||||||||| || |||||||| || || ||| | ||||||| ||||| || ||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 161449 GGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACC 161508 || || || ||||||| ||||| ||||| |||| ||||| || || | |||||| Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 161509 ACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAAC 161568 || ||||| || || || | ||||||| ||| |||||||| |||||||| || || Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 161569 ATCGTTGCTGCCCACGG 161585 || || ||| | || || Sbjct 52549 ATTGTAGCTACTCATGG 52565 >seq3927 Length=49767 Score = 122 bits (134), Expect = 9e-23 Identities = 177/246 (72%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 162405 TGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTT 162464 ||||||||||| || ||||| || || |||| ||| |||||||| ||| | || || ||| Sbjct 26007 TGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATTT 26066 Query 162465 GAACTGGCACGA-CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTAT 162523 ||||| || ||| || || | | || ||||| ||||| || || || | ||||| || Sbjct 26067 GAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATAGCATTATTTGGTCCAAT 26125 Query 162524 TGCTGTATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGC 162583 ||| | || ||| || ||||| || ||||| | || || || |||||||| || Sbjct 26126 TGCCATTTTTGTTTCGGTGTTTCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGC 26185 Query 162584 ACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAA 162643 || || || || ||| | || || |||||| | ||||| | |||||||| ||||| Sbjct 26186 GCCTAGTTTTGGTGTAGCATCTATATT-CGATTCATCCTCTTTTTTCAAGGGTTTCATAA 26244 Query 162644 CTGGAC 162649 ||||| Sbjct 26245 TTGGAC 26250 >seq2610 Length=55653 Score = 120 bits (132), Expect = 3e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 |||||| | ||| |||||||| | || || | || || ||||||||||| || || Sbjct 39278 TACATCTTGGACTCAGCTGAGAATGCTGGCTTGGATCTTCCATACTCGTGCCGAGCTGGT 39337 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 |||||||| | ||||| || || || | ||||| | || ||||| ||| |||| Sbjct 39338 GCTTGTTCAACCTGTGCTGGGAAGCTGATTTCTGGATCAGTCGACCAGTCAGACGGGTCC 39397 Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTACA 158520 ||||| || ||||||||||| || || | | | |||||||| || | || ||||| Sbjct 39398 TTCCTTGATGATGACCAAATTAATCAGGGCTACGTACTGACTTGCGTCGCGTACCCTACC 39457 Query 158521 AGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACTGTA 158561 | |||||||||||| | ||| |||| |||| ||||| || Sbjct 39458 GGAGATTGTGTGATTCATACTCACAAAGAAGGTGAACTCTA 39498 >seq78858 Length=18568 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176 |||||| | | || |||||| | || ||||||||||||||||| || || || || Sbjct 917 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTCGGTTG-TCCGGT 975 Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 162236 || | || ||||| ||| ||| | ||| | || |||||| |||| || | || || Sbjct 976 CTATTGCTCTTTCCGTGTGCGTATTTCGCTGTAGGAGGTTGGTTTACGGGTTCAACCTTT 1035 Query 162237 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTG-AGGGTGCAAACTTTCT 162295 || || ||||||||||| || | || ||||||||| | | ||| ||||| ||||| Sbjct 1036 GTAACTTCCTGGTATACTCATGGTTTGGCCAGTTCCTATTTGGAAGGCTGCAA--TTTCT 1093 Query 162296 TA 162297 || Sbjct 1094 TA 1095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545093405897040