Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq5412 327 3e-85 seq29420 197 4e-46 seq8546 178 4e-40 seq25216 158 4e-34 seq59 149 2e-31 >seq5412 Length=31808 Score = 327 bits (362), Expect = 3e-85 Identities = 492/694 (71%), Gaps = 10/694 (1%) Strand=Plus/Plus Query 18080 ATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTC 18139 ||| |||||||| | || ||||| || |||||||| || || |||||||| |||||||| Sbjct 14598 ATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTCTCTTC 14657 Query 18140 TTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAG 18199 ||||| |||| | || || | || ||| ||| || || ||||| || || | Sbjct 14658 CTCTTGACCAAGCCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 14717 Query 18200 TGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGC 18259 || || || | | || ||| | ||||| || ||||||| || || Sbjct 14718 ACTCGAGGTTACCAAAGAACCATGCCT------GAATAGGTAGCCGTCGAATACACCAGC 14771 Query 18260 AACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACAT 18319 || || | ||| || || || ||||||||||| ||||| || || |||||||| | ||| Sbjct 14772 TACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCAT 14831 Query 18320 GAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAA 18379 ||| ||||||||||| ||| || ||||||||||||| ||| || || |||| |||| Sbjct 14832 GAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATTAGAAAAGCTTCCTTAACCAAT 14891 Query 18380 AGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAA 18437 || || | | ||||| || | || || ||| || || || || ||||| |||||| | Sbjct 14892 TGGGTAGATCAAGAAA-ACAGCAGTAG-CAGTCGCAACAGGGGCTGAATACGCAACAACA 14949 Query 18438 ATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCG 18497 ||||| ||||||||||| || | ||||||||||||| | || ||||||||| || Sbjct 14950 ATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCT 15009 Query 18498 ATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCG 18557 | || | | ||||| || ||||| || | |||||| || || || |||||||| || Sbjct 15010 ACACCAAGTAAGAAGTGAAAAACAATTAGCTCATATGGACCACCATTGTATAACCATTCA 15069 Query 18558 TCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGG 18617 || | | |||||||||||| ||||| || ||||| | ||| || || | | | | | Sbjct 15070 TCAACAGATGCAGCTTCCCATATTGGATAAAAGTGCAAACCTATAGCAGCAAAAGTCTGA 15129 Query 18618 ACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGA 18677 | || || || || || || |||||||| || || | | ||| | ||||| |||||| Sbjct 15130 ATAATGGCACCAGAGATAATATTGTTTCCGTAAAGAAGAGATCCAAAAACAGGTTCACGA 15189 Query 18678 ATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCG 18737 |||||||| || || || ||||||||||||| || || || | |||| | | | |||| Sbjct 15190 ATACCATCAATATCTACCGGAGGAGCAGCAATGAAGGCTATAATAAATACGGATGTTGCG 15249 Query 18738 GTTAAAAGTGCAGGGATCATAAGTACCCCAAACC 18771 || || | | ||| ||||| | || ||||||| Sbjct 15250 GTCAATAAGGTAGGAATCATCAAAACGCCAAACC 15283 >seq29420 Length=7120 Score = 197 bits (218), Expect = 4e-46 Identities = 266/365 (73%), Gaps = 4/365 (1%) Strand=Plus/Minus Query 18345 AGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAA-TACTGAGA 18402 ||||||||||||||||| || || ||||| |||| || || | | ||||| || | || Sbjct 3774 AGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGT-AGT 3716 Query 18403 AGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTAT 18462 || |||| || || || | ||||| |||||| |||||| ||||||||||| || | Sbjct 3715 AG-CAGCCGCAACAGGAACTGAATACGCAACAGCAATCCAAGGGCGCATACCCAGACGGA 3657 Query 18463 AACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAA 18522 ||||||||||||| | || ||||||||| || | || | | ||||| || ||| Sbjct 3656 AACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGCAAAACAT 3597 Query 18523 TGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTG 18582 | || | ||| || || || || |||||||| || || | | |||||||||||| |||| Sbjct 3596 TTAGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCATATTG 3537 Query 18583 GGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGT 18642 | || ||||| | ||| || || ||| | ||| | || | || || || || |||| Sbjct 3536 GATAAAAGTGCAAACCTATAGCAGCAGAAGTCGGAATAATGTCACCAGAGATAATATTGT 3477 Query 18643 TTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAG 18702 |||| | || | | ||| || ||||| |||||||||||||| || || || ||||||| Sbjct 3476 TTCCGTGAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGAG 3417 Query 18703 CAGCA 18707 || || Sbjct 3416 CAACA 3412 >seq8546 Length=31398 Score = 178 bits (196), Expect = 4e-40 Identities = 311/449 (69%), Gaps = 8/449 (2%) Strand=Plus/Plus Query 17828 GATTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCC 17887 ||| | ||||| ||||| ||||||||||||||||||| || ||||||||||| | || Sbjct 12762 GATAGCAGCTAGGTCTAGATGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACC 12821 Query 17888 AAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGT--ACGACTTGTCCTCCAGCTGCT 17945 ||||||||| | ||| | | || ||||| || | ||||| | || | | || Sbjct 12822 AAGGTTAGCGCGGTTAATAATATCGGCCCA-ATAATTACACGACCTTGACT--ATCAACT 12878 Query 17946 ACAATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATA 18005 ||| ||||||||||| ||||| || || || |||| |||||||| || || | | Sbjct 12879 ACA---GATTGGTTGAAATTGAAGCCGTTTAGGATAAATGCCATAGTACTAATACCTAAA 12935 Query 18006 GAGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTA 18065 | |||| |||||| | || ||||||||| | ||||||||||||| | | Sbjct 12936 GTAGTAAACCATATACCTACTACAGGCCAAGCAACTAAGAAGAAATGTAAAGAATGAGAA 12995 Query 18066 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATA 18125 | ||| || |||||||| |||||||||| || ||||| || |||||||| || |||||| Sbjct 12996 TCGTTGAAACTAGCATATTGGAAGATGAATCGGCCAAAATAACCATGAGCAGCTACAATA 13055 Query 18126 TTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTC 18185 || | || || || ||||| |||||| | || || | || || | | || || Sbjct 13056 TTCTTAGTTTCCTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTTATTTTCTGTG 13115 Query 18186 GTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 18245 ||||| || || | || || || | | || |||||| || ||||| | || Sbjct 13116 GTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAACACTGAATATGGAGCCG 13175 Query 18246 CCGAATACCCCTGCAACACCGAGCATATG 18274 |||||||| || || || || | ||| || Sbjct 13176 CCGAATACACCAGCTACGCCTAACATGTG 13204 >seq25216 Length=8180 Score = 158 bits (174), Expect = 4e-34 Identities = 181/238 (76%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 18278 || ||||||||| ||||| | || |||||||| || | || || | ||| || || Sbjct 7018 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCATCTACGCCTAACATGTGAAAT 7077 Query 18279 GGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTA 18338 || ||||||||||| ||||| || | |||||||| | |||||| ||||||||||| | Sbjct 7078 GGGTGCATAAGGATGTTGTGCTCAGACTGGAATACAATCATGAAGTTGAAAGTACCAGAA 7137 Query 18339 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATA-AACGAGAAATAC 18397 || || ||||||||||||||||| || || ||||| |||| || || | | ||||| || Sbjct 7138 ATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAA-AC 7196 Query 18398 TG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACC 18454 | || | ||||| || || || || ||||| |||| | |||||| ||||||||||| Sbjct 7197 AGCAGTA-GCAGCCGCAACAGGAGCTGAATACGCAATAGCAATCCAAGGGCGCATACC 7253 >seq59 Length=339703 Score = 149 bits (164), Expect = 2e-31 Identities = 187/257 (73%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 18108 CCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTC 18167 ||||||| || ||||||||||| |||||||| ||||| ||||| | || || | || Sbjct 52565 CCATGAGTAGCTACAATATTATAAGTCTCTTCCTCTTGACCAAACCTGTAACCTTCATTA 52506 Query 18168 TGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATA 18227 ||| ||| || || ||||| ||||| | || || || | | || |||||| Sbjct 52505 GTAGATTCATTTTCTGTGGTTTCCCTAATCAAACTCGAGGTTACCAAAGAACCATGCATA 52446 Query 18228 GCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATA 18287 || ||||| | || |||||||| || || || | | ||| || || || |||||| Sbjct 52445 ACACTGAATAGGGAGCCGCCGAATACACCAGCTACGCTTAACATGTGAAATGGGTGCATA 52386 Query 18288 AGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGA 18347 ||||| ||||| || || |||||||| | |||||| ||||||||||| || || ||| Sbjct 52385 AGGATGTTGTGCTCAGCATGGAATACAATCATGAAGTTGAAAGTACCAGAAACTCCTAGA 52326 Query 18348 GGCATACCATCAGAGAA 18364 |||||||||||||| || Sbjct 52325 GGCATACCATCAGAAAA 52309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150621930015836