Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_020835.1
Length=47325
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 327 3e-85
seq29420 197 4e-46
seq8546 178 4e-40
seq25216 158 4e-34
seq59 149 2e-31
>seq5412
Length=31808
Score = 327 bits (362), Expect = 3e-85
Identities = 492/694 (71%), Gaps = 10/694 (1%)
Strand=Plus/Plus
Query 18080 ATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTC 18139
||| |||||||| | || ||||| || |||||||| || || |||||||| ||||||||
Sbjct 14598 ATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTCTCTTC 14657
Query 18140 TTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAG 18199
||||| |||| | || || | || ||| ||| || || ||||| || || |
Sbjct 14658 CTCTTGACCAAGCCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 14717
Query 18200 TGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGC 18259
|| || || | | || ||| | ||||| || ||||||| || ||
Sbjct 14718 ACTCGAGGTTACCAAAGAACCATGCCT------GAATAGGTAGCCGTCGAATACACCAGC 14771
Query 18260 AACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACAT 18319
|| || | ||| || || || ||||||||||| ||||| || || |||||||| | |||
Sbjct 14772 TACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCAT 14831
Query 18320 GAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAA 18379
||| ||||||||||| ||| || ||||||||||||| ||| || || |||| ||||
Sbjct 14832 GAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATTAGAAAAGCTTCCTTAACCAAT 14891
Query 18380 AGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAA 18437
|| || | | ||||| || | || || ||| || || || || ||||| |||||| |
Sbjct 14892 TGGGTAGATCAAGAAA-ACAGCAGTAG-CAGTCGCAACAGGGGCTGAATACGCAACAACA 14949
Query 18438 ATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCG 18497
||||| ||||||||||| || | ||||||||||||| | || ||||||||| ||
Sbjct 14950 ATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCT 15009
Query 18498 ATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCG 18557
| || | | ||||| || ||||| || | |||||| || || || |||||||| ||
Sbjct 15010 ACACCAAGTAAGAAGTGAAAAACAATTAGCTCATATGGACCACCATTGTATAACCATTCA 15069
Query 18558 TCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGG 18617
|| | | |||||||||||| ||||| || ||||| | ||| || || | | | | |
Sbjct 15070 TCAACAGATGCAGCTTCCCATATTGGATAAAAGTGCAAACCTATAGCAGCAAAAGTCTGA 15129
Query 18618 ACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGA 18677
| || || || || || || |||||||| || || | | ||| | ||||| ||||||
Sbjct 15130 ATAATGGCACCAGAGATAATATTGTTTCCGTAAAGAAGAGATCCAAAAACAGGTTCACGA 15189
Query 18678 ATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCG 18737
|||||||| || || || ||||||||||||| || || || | |||| | | | ||||
Sbjct 15190 ATACCATCAATATCTACCGGAGGAGCAGCAATGAAGGCTATAATAAATACGGATGTTGCG 15249
Query 18738 GTTAAAAGTGCAGGGATCATAAGTACCCCAAACC 18771
|| || | | ||| ||||| | || |||||||
Sbjct 15250 GTCAATAAGGTAGGAATCATCAAAACGCCAAACC 15283
>seq29420
Length=7120
Score = 197 bits (218), Expect = 4e-46
Identities = 266/365 (73%), Gaps = 4/365 (1%)
Strand=Plus/Minus
Query 18345 AGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAA-TACTGAGA 18402
||||||||||||||||| || || ||||| |||| || || | | ||||| || | ||
Sbjct 3774 AGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGT-AGT 3716
Query 18403 AGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTAT 18462
|| |||| || || || | ||||| |||||| |||||| ||||||||||| || |
Sbjct 3715 AG-CAGCCGCAACAGGAACTGAATACGCAACAGCAATCCAAGGGCGCATACCCAGACGGA 3657
Query 18463 AACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAA 18522
||||||||||||| | || ||||||||| || | || | | ||||| || |||
Sbjct 3656 AACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGCAAAACAT 3597
Query 18523 TGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTG 18582
| || | ||| || || || || |||||||| || || | | |||||||||||| ||||
Sbjct 3596 TTAGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCATATTG 3537
Query 18583 GGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGT 18642
| || ||||| | ||| || || ||| | ||| | || | || || || || ||||
Sbjct 3536 GATAAAAGTGCAAACCTATAGCAGCAGAAGTCGGAATAATGTCACCAGAGATAATATTGT 3477
Query 18643 TTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAG 18702
|||| | || | | ||| || ||||| |||||||||||||| || || || |||||||
Sbjct 3476 TTCCGTGAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGAG 3417
Query 18703 CAGCA 18707
|| ||
Sbjct 3416 CAACA 3412
>seq8546
Length=31398
Score = 178 bits (196), Expect = 4e-40
Identities = 311/449 (69%), Gaps = 8/449 (2%)
Strand=Plus/Plus
Query 17828 GATTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCC 17887
||| | ||||| ||||| ||||||||||||||||||| || ||||||||||| | ||
Sbjct 12762 GATAGCAGCTAGGTCTAGATGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACC 12821
Query 17888 AAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGT--ACGACTTGTCCTCCAGCTGCT 17945
||||||||| | ||| | | || ||||| || | ||||| | || | | ||
Sbjct 12822 AAGGTTAGCGCGGTTAATAATATCGGCCCA-ATAATTACACGACCTTGACT--ATCAACT 12878
Query 17946 ACAATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATA 18005
||| ||||||||||| ||||| || || || |||| |||||||| || || | |
Sbjct 12879 ACA---GATTGGTTGAAATTGAAGCCGTTTAGGATAAATGCCATAGTACTAATACCTAAA 12935
Query 18006 GAGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTA 18065
| |||| |||||| | || ||||||||| | ||||||||||||| | |
Sbjct 12936 GTAGTAAACCATATACCTACTACAGGCCAAGCAACTAAGAAGAAATGTAAAGAATGAGAA 12995
Query 18066 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATA 18125
| ||| || |||||||| |||||||||| || ||||| || |||||||| || ||||||
Sbjct 12996 TCGTTGAAACTAGCATATTGGAAGATGAATCGGCCAAAATAACCATGAGCAGCTACAATA 13055
Query 18126 TTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTC 18185
|| | || || || ||||| |||||| | || || | || || | | || ||
Sbjct 13056 TTCTTAGTTTCCTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTTATTTTCTGTG 13115
Query 18186 GTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 18245
||||| || || | || || || | | || |||||| || ||||| | ||
Sbjct 13116 GTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAACACTGAATATGGAGCCG 13175
Query 18246 CCGAATACCCCTGCAACACCGAGCATATG 18274
|||||||| || || || || | ||| ||
Sbjct 13176 CCGAATACACCAGCTACGCCTAACATGTG 13204
>seq25216
Length=8180
Score = 158 bits (174), Expect = 4e-34
Identities = 181/238 (76%), Gaps = 4/238 (2%)
Strand=Plus/Plus
Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 18278
|| ||||||||| ||||| | || |||||||| || | || || | ||| || ||
Sbjct 7018 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCATCTACGCCTAACATGTGAAAT 7077
Query 18279 GGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTA 18338
|| ||||||||||| ||||| || | |||||||| | |||||| ||||||||||| |
Sbjct 7078 GGGTGCATAAGGATGTTGTGCTCAGACTGGAATACAATCATGAAGTTGAAAGTACCAGAA 7137
Query 18339 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATA-AACGAGAAATAC 18397
|| || ||||||||||||||||| || || ||||| |||| || || | | ||||| ||
Sbjct 7138 ATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAA-AC 7196
Query 18398 TG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACC 18454
| || | ||||| || || || || ||||| |||| | |||||| |||||||||||
Sbjct 7197 AGCAGTA-GCAGCCGCAACAGGAGCTGAATACGCAATAGCAATCCAAGGGCGCATACC 7253
>seq59
Length=339703
Score = 149 bits (164), Expect = 2e-31
Identities = 187/257 (73%), Gaps = 0/257 (0%)
Strand=Plus/Minus
Query 18108 CCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTC 18167
||||||| || ||||||||||| |||||||| ||||| ||||| | || || | ||
Sbjct 52565 CCATGAGTAGCTACAATATTATAAGTCTCTTCCTCTTGACCAAACCTGTAACCTTCATTA 52506
Query 18168 TGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATA 18227
||| ||| || || ||||| ||||| | || || || | | || ||||||
Sbjct 52505 GTAGATTCATTTTCTGTGGTTTCCCTAATCAAACTCGAGGTTACCAAAGAACCATGCATA 52446
Query 18228 GCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATA 18287
|| ||||| | || |||||||| || || || | | ||| || || || ||||||
Sbjct 52445 ACACTGAATAGGGAGCCGCCGAATACACCAGCTACGCTTAACATGTGAAATGGGTGCATA 52386
Query 18288 AGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGA 18347
||||| ||||| || || |||||||| | |||||| ||||||||||| || || |||
Sbjct 52385 AGGATGTTGTGCTCAGCATGGAATACAATCATGAAGTTGAAAGTACCAGAAACTCCTAGA 52326
Query 18348 GGCATACCATCAGAGAA 18364
|||||||||||||| ||
Sbjct 52325 GGCATACCATCAGAAAA 52309
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 150621930015836
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