Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_020837.1
Length=198013
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 354 1e-92
seq29420 197 2e-45
seq8546 185 1e-41
seq25216 183 4e-41
seq59 174 2e-38
seq3927 136 5e-27
seq13559 86.0 8e-12
seq8630 86.0 8e-12
seq56071 82.4 1e-10
seq2610 82.4 1e-10
>seq5412
Length=31808
Score = 354 bits (392), Expect = 1e-92
Identities = 495/692 (72%), Gaps = 8/692 (1%)
Strand=Plus/Plus
Query 103421 TATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTCC 103480
||||||||||| || || || || ||||||||||| |||||||| || || |||||||||
Sbjct 14599 TATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTCTCTTCC 14658
Query 103481 TCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCACGAACCAGC 103540
||||| || | | ||||||| | || ||||||| |||| || || || | | ||
Sbjct 14659 TCTTGACCAAGCCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAA 14718
Query 103541 GAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCAGCA 103600
|| || || | ||||| ||| ||||| || | || |||| || |||||
Sbjct 14719 CTCGAGGTTACCAAAGAACCATGC------CTGAATAGGTAGCCGTCGAATACACCAGCT 14772
Query 103601 ACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATG 103660
||||| | |||||| || |||||||| || ||||| || || || ||||| || | ||||
Sbjct 14773 ACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATG 14832
Query 103661 TAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAG 103720
||||||| || || ||||| || | ||||||| ||| || || |||| |||||
Sbjct 14833 AAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATTAGAAAAGCTTCCTTAACCAATT 14892
Query 103721 GGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATC 103780
||||||| |||||| || || | |||| ||||||||| || || || || ||| |||
Sbjct 14893 GGGTAGATCAAGAAAACAGCAGTAGCAGTCGCAACAGGGGCTGAATACGCAACAACAATC 14952
Query 103781 CAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATAGATG 103840
|| |||||||| ||||||||| | | |||||||||||| ||||| || | |
Sbjct 14953 CAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACA 15012
Query 103841 CCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCATCA 103900
|||| | |||||| || || | || | | |||||||| || || | ||| ||||||
Sbjct 15013 CCAAGTAAGAAGTGAAAAACAATTAGCTCATATGGACCACCATTGTATAACCATTCATCA 15072
Query 103901 AGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGGGAACA 103960
| |||||| |||||||| || ||||| ||||| | ||| || || | | ||| |
Sbjct 15073 ACAGATGCAGCTTCCCATATTGGATAAAAGTGCAAACCTATAGCAGCAAAAGTCTGAATA 15132
Query 103961 ACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACGAATG 104020
| ||||||||||| || ||||| ||||| | || || ||| || |||||||||||
Sbjct 15133 ATGGCACCAGAGATAATATTGTTTCCGTAAAGAAGAGATCCAAAAACAGGTTCACGAATA 15192
Query 104021 CCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GCAGATGGTTGCCGC 104079
|| || ||||| || ||||| || || | ||| || | || || | ||| ||||| |
Sbjct 15193 CCATCAATATCTACCGGAGGAGCAGCAATGAAGGCTATAATAAATACGGAT-GTTGCGGT 15251
Query 104080 CAACAGAGTTGGGATCATCAGCACACCGAACC 104111
||| | || || ||||||| || || ||||
Sbjct 15252 CAATAAGGTAGGAATCATCAAAACGCCAAACC 15283
Score = 96.9 bits (106), Expect = 4e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 103172 GCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGA 103231
|| || ||||| || |||||||| |||| ||||| || ||||| ||||||||||| ||
Sbjct 14461 GCTGCTAGGTCGAGAGGGAAGTTAGGAGCATTACGTTCATGCATAACTTCCATACCAAGG 14520
Query 103232 CCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATG 103291
|| |||||| | || || ||||| || || | |||||||| |||| ||||| |
Sbjct 14521 TTAGTGCGGTTAATAATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACA 14580
Query 103292 GACTGGTTGAAGTTGA 103307
|| |||||||| ||||
Sbjct 14581 GATTGGTTGAAATTGA 14596
>seq29420
Length=7120
Score = 197 bits (218), Expect = 2e-45
Identities = 258/357 (72%), Gaps = 0/357 (0%)
Strand=Plus/Minus
Query 103687 AGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGC 103746
||||||| |||| || || |||||||||| ||||||| |||||| | | | ||
Sbjct 3772 AGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGTAGTAGC 3713
Query 103747 AGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGA 103806
||||||||||||| | || || || ||| ||||| |||||||| ||||||||| |
Sbjct 3712 AGCCGCAACAGGAACTGAATACGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACT 3653
Query 103807 CAATTCCCACTCACGTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAG 103866
| |||||||||||| ||||| || | | |||| | |||||| || || ||
Sbjct 3652 AAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGCAAAACATTTAG 3593
Query 103867 TTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATA 103926
| |||||||||| || || | ||| ||||||| |||||| |||||||| || |||||
Sbjct 3592 CTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCATATTGGATA 3533
Query 103927 GAAGTGAAGACCAATTGCGTTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACC 103986
||||| | ||| || || || | |||| || |||||||||| || ||||| ||
Sbjct 3532 AAAGTGCAAACCTATAGCAGCAGAAGTCGGAATAATGTCACCAGAGATAATATTGTTTCC 3473
Query 103987 GTACATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGC 104043
|| | || || |||| || ||||||||||| || || ||||| || ||||| ||
Sbjct 3472 GTGAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGAGC 3416
>seq8546
Length=31398
Score = 185 bits (204), Expect = 1e-41
Identities = 304/445 (68%), Gaps = 6/445 (1%)
Strand=Plus/Plus
Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230
|||||| ||||| || ||||||| ||||| ||||| || ||||| ||||||||||| ||
Sbjct 12765 AGCAGCTAGGTCTAGATGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 12824
Query 103231 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGAT 103290
||||||||| | || || ||||| | | |||||||| |||| ||||| |
Sbjct 12825 GTTAGCGCGGTTAATAATATCGGCCCA----ATAATTACACGACCTTGACTATCAACTAC 12880
Query 103291 GGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGT 103350
|| |||||||| ||||| ||||| ||| | || ||||| || |||| ||| | | ||
Sbjct 12881 AGATTGGTTGAAATTGAAGCCGTTTAGGATAAATGCCATAGTACTAATACCTAAAGTAGT 12940
Query 103351 GAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTT 103410
||||| ||||| ||||| || | || | |||
Sbjct 12941 AAACCATATACCTACTACAGGCCAAGCAACTAAGAAGAAATGTAAAGAATGAGAATCGTT 13000
Query 103411 GAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTA 103470
||| || ||||||||||| || || || || ||||||||||| ||||| || || |
Sbjct 13001 GAAACTAGCATATTGGAAGATGAATCGGCCAAAATAACCATGAGCAGCTACAATATTCTT 13060
Query 103471 TGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTC 103530
|| || |||||||| || || ||||||| | || |||| | |||| || || ||
Sbjct 13061 AGTTTCCTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTTATTTTCTGTGGTTTC 13120
Query 103531 AC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGA 103589
| || | | | | || || || | ||||| |||||| ||||||| | || || ||||
Sbjct 13121 CCTGATCAAACTA-GAGGTTACCAAAGAACCATGCATAACACTGAATATGGAGCCGCCGA 13179
Query 103590 AGACTCCAGCAACGCCCAGCATGTG 103614
| || ||||| ||||| | ||||||
Sbjct 13180 ATACACCAGCTACGCCTAACATGTG 13204
>seq25216
Length=8180
Score = 183 bits (202), Expect = 4e-41
Identities = 184/239 (77%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 103556 GAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCCAGCATGTGG 103615
||||| |||||||||||||| || || || ||||| || ||| | ||||| | ||||||
Sbjct 7015 GAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCATCTACGCCTAACATGTGA 7074
Query 103616 AAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCC 103675
|| |||||||| || ||||| || || | ||||| || | |||| ||||||| || ||
Sbjct 7075 AATGGGTGCATAAGGATGTTGTGCTCAGACTGGAATACAATCATGAAGTTGAAAGTACCA 7134
Query 103676 GAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAAT 103735
||||| || | ||||||| |||| || || |||||||||| ||||||| ||||||
Sbjct 7135 GAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAA 7194
Query 103736 ACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCC 103794
|| || | ||||||||||||||||| || || || | | ||||| |||||||| ||
Sbjct 7195 ACAGCAGTAGCAGCCGCAACAGGAGCTGAATACGCAATAGCAATCCAAGGGCGCATACC 7253
>seq59
Length=339703
Score = 174 bits (192), Expect = 2e-38
Identities = 195/261 (75%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 103446 AACCATGAGCGGCTACGATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGT 103505
||||||||| ||||| || || || |||||||||||||| || ||| ||||||| | |
Sbjct 52567 AACCATGAGTAGCTACAATATTATAAGTCTCTTCCTCTTGACCAAACCTGTAACCTTCAT 52508
Query 103506 TTTGAGATTCAGTTTCAGTCGTCTCACGAACCAGCGAGGACGTAACAAGCGAACCGTGCA 103565
| ||||||| |||| || || || | || || || || || | ||||| ||||
Sbjct 52507 TAGTAGATTCATTTTCTGTGGTTTCCCTAATCAAACTCGAGGTTACCAAAGAACCATGCA 52448
Query 103566 TAGCACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCA 103625
|| ||||||| || || || ||||| || ||||| |||| | |||||| || |||||||
Sbjct 52447 TAACACTGAATAGGGAGCCGCCGAATACACCAGCTACGCTTAACATGTGAAATGGGTGCA 52388
Query 103626 TGAGAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCA 103685
| || ||||| || || || ||||| || | |||| ||||||| || || |||| || |
Sbjct 52387 TAAGGATGTTGTGCTCAGCATGGAATACAATCATGAAGTTGAAAGTACCAGAAACTCCTA 52328
Query 103686 AAGGCATAGCATCGGAGAACG 103706
||||||| |||| || ||||
Sbjct 52327 GAGGCATACCATCAGAAAACG 52307
>seq3927
Length=49767
Score = 136 bits (150), Expect = 5e-27
Identities = 178/245 (73%), Gaps = 1/245 (0%)
Strand=Plus/Minus
Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249
||||| ||||| || || || | ||||| | ||||| || ||| | ||| ||||||||
Sbjct 26250 GTCCAATTATGAAACCCTTGAAAAAAGAGGATGAATCGAA-TATAGATGCTACACCAAAA 26192
Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309
|||||||||||||||| ||||| || || ||||| || |||||||| ||||||
Sbjct 26191 CTAGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATTAGAAACACCGAAACAAAA 26132
Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369
| || || || ||| | || || || ||||| || || || | | || | | |||
Sbjct 26131 ATGGCAATTGGACCAAATAATGCTATTGCATTATAAGGTCGCAATTGAACAGATCGAGCA 26072
Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429
| || |||||||| | ||| ||||| || || |||| || || |||||||| ||||||
Sbjct 26071 AGTTCAAATTGACGTAACATAAAACCTATTAGTCCAAAAGCGCCATGGAGAGCAACAAAA 26012
Query 102430 GCCCA 102434
| |||
Sbjct 26011 GTCCA 26007
>seq13559
Length=16232
Score = 86.0 bits (94), Expect = 8e-12
Identities = 110/149 (74%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 103437 GACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGT 103496
|| |||| ||||||||||| |||||||| || || || | |||||||| || || ||||
Sbjct 5524 GATCGAAATAACCATGAGCAGCTACGATATTCTAAGTTTTCTCCTCTTGACCAAATTTGT 5583
Query 103497 AACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCAC-GAACCAGCGAGGACGTAACAAGC 103555
|||| | || | ||||| |||| | || || | || | ||| | || || || |
Sbjct 5584 AACCTTCATTAGCATATTCATTTTCTATGGTTTCCCTGATCAAGCTA-GAGGTTACCAAA 5642
Query 103556 GAACCGTGCATAGCACTGAACAGTGAACC 103584
||||| |||||||||||||| || || ||
Sbjct 5643 GAACCATGCATAGCACTGAATAGGGAGCC 5671
>seq8630
Length=23577
Score = 86.0 bits (94), Expect = 8e-12
Identities = 79/99 (80%), Gaps = 1/99 (1%)
Strand=Plus/Minus
Query 103403 GAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGC-TAC 103461
|| |||||||| || ||||||||||| || ||||| || ||||||||||| || |||
Sbjct 7595 GAATTGTTGAAACTAGCATATTGGAAGATGAATCGACCAAAATAACCATGAGCAGCGTAC 7536
Query 103462 GATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACC 103500
||| || || || || |||||||| || || ||||||||
Sbjct 7535 GATATTCTAAGTTTCCTCCTCTTGACCAAATTTGTAACC 7497
>seq56071
Length=1723
Score = 82.4 bits (90), Expect = 1e-10
Identities = 132/188 (70%), Gaps = 4/188 (2%)
Strand=Plus/Plus
Query 102814 ATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCT--AGTTGATCGTCA 102871
|||||| ||||| | | || |||||||| | | |||| ||||| | || || |||
Sbjct 1535 ATCCGAGGTTGGCTTCGAAACACAGGTCAGGAGATAACC--CTTCTCCATCTGTTCCTCA 1592
Query 102872 TCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTA 102931
|| ||||| || |||| ||||| || | |||||| | || | |||||||||||
Sbjct 1593 TCAAGAAACGAGCCATCTGACTGATCAACTGAACCCGAAACCATGATCCCAGCACAAGTG 1652
Query 102932 GAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCT 102991
|| || | ||||| | || ||||| || ||||| | ||| ||||| || || || ||
Sbjct 1653 GAGCATGATCCAGCCCTGCACGAATACGGAAGATCCAAACCCGCTTCCTCGGCTGCATCA 1712
Query 102992 AGAATATA 102999
|| || ||
Sbjct 1713 AGGATGTA 1720
>seq2610
Length=55653
Score = 82.4 bits (90), Expect = 1e-10
Identities = 132/188 (70%), Gaps = 4/188 (2%)
Strand=Plus/Minus
Query 102814 ATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCT--AGTTGATCGTCA 102871
|||||| ||||| | | || |||||||| | |||| ||||| | || || |||
Sbjct 41200 ATCCGAGGTTGGCTTCGAAACACAGGTCAGGAGGTAACC--CTTCTCCATCTGTTCCTCA 41143
Query 102872 TCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTA 102931
|| ||||| || |||| ||||| || | |||||| | || | ||||||||||||
Sbjct 41142 TCAAGAAACGAGCCATCTGACTGATCAACTGAACCCGAAACCATGATCCCAGCACAAGTA 41083
Query 102932 GAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCT 102991
|| || | ||||| | || ||||| || ||||| | ||| ||||| || || || ||
Sbjct 41082 GAGCATGATCCAGCCCTGCACGAATACGGAAGATCCAAACCCGCTTCCTCGGCTGCATCA 41023
Query 102992 AGAATATA 102999
|| || ||
Sbjct 41022 AGGATGTA 41015
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 630444274121520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |