Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq5412 354 1e-92 seq29420 197 2e-45 seq8546 185 1e-41 seq25216 183 4e-41 seq59 174 2e-38 seq3927 136 5e-27 seq13559 86.0 8e-12 seq8630 86.0 8e-12 seq56071 82.4 1e-10 seq2610 82.4 1e-10 >seq5412 Length=31808 Score = 354 bits (392), Expect = 1e-92 Identities = 495/692 (72%), Gaps = 8/692 (1%) Strand=Plus/Plus Query 103421 TATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTCC 103480 ||||||||||| || || || || ||||||||||| |||||||| || || ||||||||| Sbjct 14599 TATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTCTCTTCC 14658 Query 103481 TCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCACGAACCAGC 103540 ||||| || | | ||||||| | || ||||||| |||| || || || | | || Sbjct 14659 TCTTGACCAAGCCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAA 14718 Query 103541 GAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCAGCA 103600 || || || | ||||| ||| ||||| || | || |||| || ||||| Sbjct 14719 CTCGAGGTTACCAAAGAACCATGC------CTGAATAGGTAGCCGTCGAATACACCAGCT 14772 Query 103601 ACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATG 103660 ||||| | |||||| || |||||||| || ||||| || || || ||||| || | |||| Sbjct 14773 ACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATG 14832 Query 103661 TAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAG 103720 ||||||| || || ||||| || | ||||||| ||| || || |||| ||||| Sbjct 14833 AAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATTAGAAAAGCTTCCTTAACCAATT 14892 Query 103721 GGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATC 103780 ||||||| |||||| || || | |||| ||||||||| || || || || ||| ||| Sbjct 14893 GGGTAGATCAAGAAAACAGCAGTAGCAGTCGCAACAGGGGCTGAATACGCAACAACAATC 14952 Query 103781 CAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATAGATG 103840 || |||||||| ||||||||| | | |||||||||||| ||||| || | | Sbjct 14953 CAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACA 15012 Query 103841 CCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCATCA 103900 |||| | |||||| || || | || | | |||||||| || || | ||| |||||| Sbjct 15013 CCAAGTAAGAAGTGAAAAACAATTAGCTCATATGGACCACCATTGTATAACCATTCATCA 15072 Query 103901 AGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGGGAACA 103960 | |||||| |||||||| || ||||| ||||| | ||| || || | | ||| | Sbjct 15073 ACAGATGCAGCTTCCCATATTGGATAAAAGTGCAAACCTATAGCAGCAAAAGTCTGAATA 15132 Query 103961 ACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACGAATG 104020 | ||||||||||| || ||||| ||||| | || || ||| || ||||||||||| Sbjct 15133 ATGGCACCAGAGATAATATTGTTTCCGTAAAGAAGAGATCCAAAAACAGGTTCACGAATA 15192 Query 104021 CCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GCAGATGGTTGCCGC 104079 || || ||||| || ||||| || || | ||| || | || || | ||| ||||| | Sbjct 15193 CCATCAATATCTACCGGAGGAGCAGCAATGAAGGCTATAATAAATACGGAT-GTTGCGGT 15251 Query 104080 CAACAGAGTTGGGATCATCAGCACACCGAACC 104111 ||| | || || ||||||| || || |||| Sbjct 15252 CAATAAGGTAGGAATCATCAAAACGCCAAACC 15283 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 103172 GCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGA 103231 || || ||||| || |||||||| |||| ||||| || ||||| ||||||||||| || Sbjct 14461 GCTGCTAGGTCGAGAGGGAAGTTAGGAGCATTACGTTCATGCATAACTTCCATACCAAGG 14520 Query 103232 CCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATG 103291 || |||||| | || || ||||| || || | |||||||| |||| ||||| | Sbjct 14521 TTAGTGCGGTTAATAATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACA 14580 Query 103292 GACTGGTTGAAGTTGA 103307 || |||||||| |||| Sbjct 14581 GATTGGTTGAAATTGA 14596 >seq29420 Length=7120 Score = 197 bits (218), Expect = 2e-45 Identities = 258/357 (72%), Gaps = 0/357 (0%) Strand=Plus/Minus Query 103687 AGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGC 103746 ||||||| |||| || || |||||||||| ||||||| |||||| | | | || Sbjct 3772 AGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGTAGTAGC 3713 Query 103747 AGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGA 103806 ||||||||||||| | || || || ||| ||||| |||||||| ||||||||| | Sbjct 3712 AGCCGCAACAGGAACTGAATACGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACT 3653 Query 103807 CAATTCCCACTCACGTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAG 103866 | |||||||||||| ||||| || | | |||| | |||||| || || || Sbjct 3652 AAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGCAAAACATTTAG 3593 Query 103867 TTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATA 103926 | |||||||||| || || | ||| ||||||| |||||| |||||||| || ||||| Sbjct 3592 CTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCATATTGGATA 3533 Query 103927 GAAGTGAAGACCAATTGCGTTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACC 103986 ||||| | ||| || || || | |||| || |||||||||| || ||||| || Sbjct 3532 AAAGTGCAAACCTATAGCAGCAGAAGTCGGAATAATGTCACCAGAGATAATATTGTTTCC 3473 Query 103987 GTACATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGC 104043 || | || || |||| || ||||||||||| || || ||||| || ||||| || Sbjct 3472 GTGAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGAGC 3416 >seq8546 Length=31398 Score = 185 bits (204), Expect = 1e-41 Identities = 304/445 (68%), Gaps = 6/445 (1%) Strand=Plus/Plus Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230 |||||| ||||| || ||||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 12765 AGCAGCTAGGTCTAGATGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 12824 Query 103231 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGAT 103290 ||||||||| | || || ||||| | | |||||||| |||| ||||| | Sbjct 12825 GTTAGCGCGGTTAATAATATCGGCCCA----ATAATTACACGACCTTGACTATCAACTAC 12880 Query 103291 GGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGT 103350 || |||||||| ||||| ||||| ||| | || ||||| || |||| ||| | | || Sbjct 12881 AGATTGGTTGAAATTGAAGCCGTTTAGGATAAATGCCATAGTACTAATACCTAAAGTAGT 12940 Query 103351 GAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTT 103410 ||||| ||||| ||||| || | || | ||| Sbjct 12941 AAACCATATACCTACTACAGGCCAAGCAACTAAGAAGAAATGTAAAGAATGAGAATCGTT 13000 Query 103411 GAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTA 103470 ||| || ||||||||||| || || || || ||||||||||| ||||| || || | Sbjct 13001 GAAACTAGCATATTGGAAGATGAATCGGCCAAAATAACCATGAGCAGCTACAATATTCTT 13060 Query 103471 TGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTC 103530 || || |||||||| || || ||||||| | || |||| | |||| || || || Sbjct 13061 AGTTTCCTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTTATTTTCTGTGGTTTC 13120 Query 103531 AC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGA 103589 | || | | | | || || || | ||||| |||||| ||||||| | || || |||| Sbjct 13121 CCTGATCAAACTA-GAGGTTACCAAAGAACCATGCATAACACTGAATATGGAGCCGCCGA 13179 Query 103590 AGACTCCAGCAACGCCCAGCATGTG 103614 | || ||||| ||||| | |||||| Sbjct 13180 ATACACCAGCTACGCCTAACATGTG 13204 >seq25216 Length=8180 Score = 183 bits (202), Expect = 4e-41 Identities = 184/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 103556 GAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCCAGCATGTGG 103615 ||||| |||||||||||||| || || || ||||| || ||| | ||||| | |||||| Sbjct 7015 GAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCATCTACGCCTAACATGTGA 7074 Query 103616 AAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCC 103675 || |||||||| || ||||| || || | ||||| || | |||| ||||||| || || Sbjct 7075 AATGGGTGCATAAGGATGTTGTGCTCAGACTGGAATACAATCATGAAGTTGAAAGTACCA 7134 Query 103676 GAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAAT 103735 ||||| || | ||||||| |||| || || |||||||||| ||||||| |||||| Sbjct 7135 GAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAA 7194 Query 103736 ACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCC 103794 || || | ||||||||||||||||| || || || | | ||||| |||||||| || Sbjct 7195 ACAGCAGTAGCAGCCGCAACAGGAGCTGAATACGCAATAGCAATCCAAGGGCGCATACC 7253 >seq59 Length=339703 Score = 174 bits (192), Expect = 2e-38 Identities = 195/261 (75%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 103446 AACCATGAGCGGCTACGATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGT 103505 ||||||||| ||||| || || || |||||||||||||| || ||| ||||||| | | Sbjct 52567 AACCATGAGTAGCTACAATATTATAAGTCTCTTCCTCTTGACCAAACCTGTAACCTTCAT 52508 Query 103506 TTTGAGATTCAGTTTCAGTCGTCTCACGAACCAGCGAGGACGTAACAAGCGAACCGTGCA 103565 | ||||||| |||| || || || | || || || || || | ||||| |||| Sbjct 52507 TAGTAGATTCATTTTCTGTGGTTTCCCTAATCAAACTCGAGGTTACCAAAGAACCATGCA 52448 Query 103566 TAGCACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCA 103625 || ||||||| || || || ||||| || ||||| |||| | |||||| || ||||||| Sbjct 52447 TAACACTGAATAGGGAGCCGCCGAATACACCAGCTACGCTTAACATGTGAAATGGGTGCA 52388 Query 103626 TGAGAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCA 103685 | || ||||| || || || ||||| || | |||| ||||||| || || |||| || | Sbjct 52387 TAAGGATGTTGTGCTCAGCATGGAATACAATCATGAAGTTGAAAGTACCAGAAACTCCTA 52328 Query 103686 AAGGCATAGCATCGGAGAACG 103706 ||||||| |||| || |||| Sbjct 52327 GAGGCATACCATCAGAAAACG 52307 >seq3927 Length=49767 Score = 136 bits (150), Expect = 5e-27 Identities = 178/245 (73%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | ||||| | ||||| || ||| | ||| |||||||| Sbjct 26250 GTCCAATTATGAAACCCTTGAAAAAAGAGGATGAATCGAA-TATAGATGCTACACCAAAA 26192 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 |||||||||||||||| ||||| || || ||||| || |||||||| |||||| Sbjct 26191 CTAGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATTAGAAACACCGAAACAAAA 26132 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 | || || || ||| | || || || ||||| || || || | | || | | ||| Sbjct 26131 ATGGCAATTGGACCAAATAATGCTATTGCATTATAAGGTCGCAATTGAACAGATCGAGCA 26072 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | || |||||||| | ||| ||||| || || |||| || || |||||||| |||||| Sbjct 26071 AGTTCAAATTGACGTAACATAAAACCTATTAGTCCAAAAGCGCCATGGAGAGCAACAAAA 26012 Query 102430 GCCCA 102434 | ||| Sbjct 26011 GTCCA 26007 >seq13559 Length=16232 Score = 86.0 bits (94), Expect = 8e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 103437 GACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGT 103496 || |||| ||||||||||| |||||||| || || || | |||||||| || || |||| Sbjct 5524 GATCGAAATAACCATGAGCAGCTACGATATTCTAAGTTTTCTCCTCTTGACCAAATTTGT 5583 Query 103497 AACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCAC-GAACCAGCGAGGACGTAACAAGC 103555 |||| | || | ||||| |||| | || || | || | ||| | || || || | Sbjct 5584 AACCTTCATTAGCATATTCATTTTCTATGGTTTCCCTGATCAAGCTA-GAGGTTACCAAA 5642 Query 103556 GAACCGTGCATAGCACTGAACAGTGAACC 103584 ||||| |||||||||||||| || || || Sbjct 5643 GAACCATGCATAGCACTGAATAGGGAGCC 5671 >seq8630 Length=23577 Score = 86.0 bits (94), Expect = 8e-12 Identities = 79/99 (80%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 103403 GAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGC-TAC 103461 || |||||||| || ||||||||||| || ||||| || ||||||||||| || ||| Sbjct 7595 GAATTGTTGAAACTAGCATATTGGAAGATGAATCGACCAAAATAACCATGAGCAGCGTAC 7536 Query 103462 GATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACC 103500 ||| || || || || |||||||| || || |||||||| Sbjct 7535 GATATTCTAAGTTTCCTCCTCTTGACCAAATTTGTAACC 7497 >seq56071 Length=1723 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/188 (70%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 102814 ATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCT--AGTTGATCGTCA 102871 |||||| ||||| | | || |||||||| | | |||| ||||| | || || ||| Sbjct 1535 ATCCGAGGTTGGCTTCGAAACACAGGTCAGGAGATAACC--CTTCTCCATCTGTTCCTCA 1592 Query 102872 TCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTA 102931 || ||||| || |||| ||||| || | |||||| | || | ||||||||||| Sbjct 1593 TCAAGAAACGAGCCATCTGACTGATCAACTGAACCCGAAACCATGATCCCAGCACAAGTG 1652 Query 102932 GAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCT 102991 || || | ||||| | || ||||| || ||||| | ||| ||||| || || || || Sbjct 1653 GAGCATGATCCAGCCCTGCACGAATACGGAAGATCCAAACCCGCTTCCTCGGCTGCATCA 1712 Query 102992 AGAATATA 102999 || || || Sbjct 1713 AGGATGTA 1720 >seq2610 Length=55653 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/188 (70%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 102814 ATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCT--AGTTGATCGTCA 102871 |||||| ||||| | | || |||||||| | |||| ||||| | || || ||| Sbjct 41200 ATCCGAGGTTGGCTTCGAAACACAGGTCAGGAGGTAACC--CTTCTCCATCTGTTCCTCA 41143 Query 102872 TCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTA 102931 || ||||| || |||| ||||| || | |||||| | || | |||||||||||| Sbjct 41142 TCAAGAAACGAGCCATCTGACTGATCAACTGAACCCGAAACCATGATCCCAGCACAAGTA 41083 Query 102932 GAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCT 102991 || || | ||||| | || ||||| || ||||| | ||| ||||| || || || || Sbjct 41082 GAGCATGATCCAGCCCTGCACGAATACGGAAGATCCAAACCCGCTTCCTCGGCTGCATCA 41023 Query 102992 AGAATATA 102999 || || || Sbjct 41022 AGGATGTA 41015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 630444274121520