Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq5412 320 5e-83 seq8546 190 6e-44 seq29420 159 1e-34 seq59 149 2e-31 seq8630 123 7e-24 seq4835 104 7e-18 >seq5412 Length=31808 Score = 320 bits (354), Expect = 5e-83 Identities = 488/693 (70%), Gaps = 8/693 (1%) Strand=Plus/Plus Query 21716 ATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTC 21775 |||||||||||| | || |||||||| || |||||||| || ||||| ||||||||||| Sbjct 14598 ATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTCTCTTC 14657 Query 21776 CTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAG 21835 ||||||||||| | ||||||| | || || | | ||| || || || | || | Sbjct 14658 CTCTTGACCAAGCCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 14717 Query 21836 TGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGC 21895 ||| || |||| ||| ||| | ||| | || | ||||| || || Sbjct 14718 ACTCGAGGTTACCAAAGAACCATGCCT------GAATAGGTAGCCGTCGAATACACCAGC 14771 Query 21896 CACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCAT 21955 || || | ||||||||| || |||||||| || ||||||||||||||||| || | ||| Sbjct 14772 TACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCAT 14831 Query 21956 GTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAA 22015 | ||||||| || || || || || | |||||| ||| |||||| || | |||| Sbjct 14832 GAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATTAGAAAAGCTTCCTTAACCAAT 14891 Query 22016 CGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGAT 22075 || || | | ||| |||||||| |||| || ||||| || || |||||||||| || Sbjct 14892 TGGGTAGATCAAGAAAACAGCAGTAGCAGTCGCAACAGGGGCTGAATACGCAACAACAAT 14951 Query 22076 CCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGAC 22135 ||| || | ||| || || || | |||||||||||||| || ||||||||| | || Sbjct 14952 CCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTAC 15011 Query 22136 GCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATC 22195 |||| | |||||| || || | || | ||||||| || ||||| | ||||||||| Sbjct 15012 ACCAAGTAAGAAGTGAAAAACAATTAGCTCATATGGACCACCATTGTATAACCATTCATC 15071 Query 22196 AAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAAC 22255 || | ||||||||||| ||||| || ||||| | || || ||| | || ||| Sbjct 15072 AACAGATGCAGCTTCCCATATTGGATAAAAGTGCAAACCTATAGCAGCAAAAGTCTGAAT 15131 Query 22256 GACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGAT 22315 | ||| || || || || ||||| || || | || || ||| || ||||| || || Sbjct 15132 AATGGCACCAGAGATAATATTGTTTCCGTAAAGAAGAGATCCAAAAACAGGTTCACGAAT 15191 Query 22316 TCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGG- 22374 ||||| || || || || || || ||| ||||| |||||||| | ||| |||| Sbjct 15192 ACCATCAATATCTACCGGAGGAGCAGCAATGAAGGCTATAATAAATACGGATGTTGCGGT 15251 Query 22375 CAAGGAGGCACGGAATCATAAGGACTCCGAACC 22407 ||| ||| | |||||||| | || || |||| Sbjct 15252 CAATAAGGTA-GGAATCATCAAAACGCCAAACC 15283 >seq8546 Length=31398 Score = 190 bits (210), Expect = 6e-44 Identities = 238/326 (73%), Gaps = 4/326 (1%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || ||||||| || || || || |||||||| || || | |||||||| Sbjct 12769 GCTAGGTCTAGATGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 12828 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 || ||||||| ||| || ||||| | || || | || | | | | | | |||| Sbjct 12829 GCGCGGTTAATAATATCGGCCCAA----TAATTACACGACCTTGACTATCAACTACAGAT 12884 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||| || || | | | || ||||| ||| | || | | || |||| Sbjct 12885 TGGTTGAAATTGAAGCCGTTTAGGATAAATGCCATAGTACTAATACCTAAAGTAGTAAAC 12944 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 || |||||||| |||||||| ||| | | |||||||| | | | | |||| || || Sbjct 12945 CATATACCTACTACAGGCCAAGCAACTAAGAAGAAATGTAAAGAATGAGAATCGTTGAAA 13004 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||||||||||||||||| | || |||||||| || |||||||| |||||||| | ||| Sbjct 13005 CTAGCATATTGGAAGATGAATCGGCCAAAATAACCATGAGCAGCTACAATATTCTTAGTT 13064 Query 21771 TCTTCCTCTTGACCAAACTTGTAACC 21796 || |||||||||||||| ||||||| Sbjct 13065 TCCTCCTCTTGACCAAATCTGTAACC 13090 >seq29420 Length=7120 Score = 159 bits (176), Expect = 1e-34 Identities = 249/356 (70%), Gaps = 0/356 (0%) Strand=Plus/Minus Query 21984 GGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCA 22043 |||||| |||||||||| || || |||| || || | | ||| | || ||| ||| Sbjct 3771 GGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGTAGTAGCA 3712 Query 22044 GCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTA 22103 || || |||||| | || ||||||||| ||||| || | ||| || || || | ||| Sbjct 3711 GCCGCAACAGGAACTGAATACGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTA 3652 Query 22104 AGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGT 22163 ||||||||||| || ||||||||| | || |||| | |||||| || || | || Sbjct 3651 AGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGCAAAACATTTAGC 3592 Query 22164 TGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAG 22223 | | ||||| || ||||| | ||||||||||| | ||||||||||| ||||| || Sbjct 3591 TCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCATATTGGATAA 3532 Query 22224 AAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCA 22283 ||||| | || || ||| | |||||| | | | || || || || ||||| || Sbjct 3531 AAGTGCAAACCTATAGCAGCAGAAGTCGGAATAATGTCACCAGAGATAATATTGTTTCCG 3472 Query 22284 TACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGC 22339 | | || || |||| || ||||| || || ||||| || || || || || || Sbjct 3471 TGAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGAGC 3416 >seq59 Length=339703 Score = 149 bits (164), Expect = 2e-31 Identities = 187/257 (73%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 21744 CCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTC 21803 || |||| ||| |||||||| |||||||||||||||||||||||| ||||||| | || Sbjct 52565 CCATGAGTAGCTACAATATTATAAGTCTCTTCCTCTTGACCAAACCTGTAACCTTCATTA 52506 Query 21804 TGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATA 21863 || | | ||| || || || | ||| | ||| || |||| ||| |||||| Sbjct 52505 GTAGATTCATTTTCTGTGGTTTCCCTAATCAAACTCGAGGTTACCAAAGAACCATGCATA 52446 Query 21864 GCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATA 21923 || ||| | || || ||||| || || || | | ||||||||| || |||||| Sbjct 52445 ACACTGAATAGGGAGCCGCCGAATACACCAGCTACGCTTAACATGTGAAATGGGTGCATA 52386 Query 21924 AGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAG 21983 || || ||||||||||| ||||| || | |||| ||||||| || || || | || | Sbjct 52385 AGGATGTTGTGCTCAGCATGGAATACAATCATGAAGTTGAAAGTACCAGAAACTCCTAGA 52326 Query 21984 GGCATAGCATCAGAAAA 22000 |||||| |||||||||| Sbjct 52325 GGCATACCATCAGAAAA 52309 >seq8630 Length=23577 Score = 123 bits (136), Expect = 7e-24 Identities = 108/133 (81%), Gaps = 1/133 (1%) Strand=Plus/Minus Query 21665 AGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAA 21724 |||||| || || | |||||||| | | ||| ||||| || || |||||||||||||| Sbjct 7629 AGGCCAAGCGGCTAATAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAA 7570 Query 21725 GATAAGCCGACCAAAATAGCCGTGAGCAGC-AACAATATTGTAAGTCTCTTCCTCTTGAC 21783 ||| | ||||||||||| || |||||||| || ||||| ||||| || |||||||||| Sbjct 7569 GATGAATCGACCAAAATAACCATGAGCAGCGTACGATATTCTAAGTTTCCTCCTCTTGAC 7510 Query 21784 CAAACTTGTAACC 21796 |||| |||||||| Sbjct 7509 CAAATTTGTAACC 7497 >seq4835 Length=43218 Score = 104 bits (114), Expect = 7e-18 Identities = 106/138 (77%), Gaps = 8/138 (6%) Strand=Plus/Minus Query 21665 AGGCCAGGCAGCAAGAAAGAAATG------AAGACTACGGGAATTATTAAAGCTAGCATA 21718 |||||| || || | |||||||| |||| ||| || || || || |||||||| Sbjct 9194 AGGCCAAGCGGCTAATAAGAAATGTAATTAAAGA--ACGAGATTTGTTGAAACTAGCATA 9137 Query 21719 TTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTC 21778 ||||||||| | | |||||||| || |||||||| || ||||| ||||| || ||||| Sbjct 9136 TTGGAAGATGAATCTGCCAAAATAACCATGAGCAGCTACGATATTCTAAGTTTCCTCCTC 9077 Query 21779 TTGACCAAACTTGTAACC 21796 ||||||||| ||||||| Sbjct 9076 TTGACCAAATCTGTAACC 9059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145535051545320