Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_020838.1
Length=45728
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 320 5e-83
seq8546 190 6e-44
seq29420 159 1e-34
seq59 149 2e-31
seq8630 123 7e-24
seq4835 104 7e-18
>seq5412
Length=31808
Score = 320 bits (354), Expect = 5e-83
Identities = 488/693 (70%), Gaps = 8/693 (1%)
Strand=Plus/Plus
Query 21716 ATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTC 21775
|||||||||||| | || |||||||| || |||||||| || ||||| |||||||||||
Sbjct 14598 ATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTCTCTTC 14657
Query 21776 CTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAG 21835
||||||||||| | ||||||| | || || | | ||| || || || | || |
Sbjct 14658 CTCTTGACCAAGCCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 14717
Query 21836 TGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGC 21895
||| || |||| ||| ||| | ||| | || | ||||| || ||
Sbjct 14718 ACTCGAGGTTACCAAAGAACCATGCCT------GAATAGGTAGCCGTCGAATACACCAGC 14771
Query 21896 CACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCAT 21955
|| || | ||||||||| || |||||||| || ||||||||||||||||| || | |||
Sbjct 14772 TACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCAT 14831
Query 21956 GTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAA 22015
| ||||||| || || || || || | |||||| ||| |||||| || | ||||
Sbjct 14832 GAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATTAGAAAAGCTTCCTTAACCAAT 14891
Query 22016 CGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGAT 22075
|| || | | ||| |||||||| |||| || ||||| || || |||||||||| ||
Sbjct 14892 TGGGTAGATCAAGAAAACAGCAGTAGCAGTCGCAACAGGGGCTGAATACGCAACAACAAT 14951
Query 22076 CCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGAC 22135
||| || | ||| || || || | |||||||||||||| || ||||||||| | ||
Sbjct 14952 CCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTAC 15011
Query 22136 GCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATC 22195
|||| | |||||| || || | || | ||||||| || ||||| | |||||||||
Sbjct 15012 ACCAAGTAAGAAGTGAAAAACAATTAGCTCATATGGACCACCATTGTATAACCATTCATC 15071
Query 22196 AAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAAC 22255
|| | ||||||||||| ||||| || ||||| | || || ||| | || |||
Sbjct 15072 AACAGATGCAGCTTCCCATATTGGATAAAAGTGCAAACCTATAGCAGCAAAAGTCTGAAT 15131
Query 22256 GACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGAT 22315
| ||| || || || || ||||| || || | || || ||| || ||||| || ||
Sbjct 15132 AATGGCACCAGAGATAATATTGTTTCCGTAAAGAAGAGATCCAAAAACAGGTTCACGAAT 15191
Query 22316 TCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGG- 22374
||||| || || || || || || ||| ||||| |||||||| | ||| ||||
Sbjct 15192 ACCATCAATATCTACCGGAGGAGCAGCAATGAAGGCTATAATAAATACGGATGTTGCGGT 15251
Query 22375 CAAGGAGGCACGGAATCATAAGGACTCCGAACC 22407
||| ||| | |||||||| | || || ||||
Sbjct 15252 CAATAAGGTA-GGAATCATCAAAACGCCAAACC 15283
>seq8546
Length=31398
Score = 190 bits (210), Expect = 6e-44
Identities = 238/326 (73%), Gaps = 4/326 (1%)
Strand=Plus/Plus
Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530
|| ||||| || ||||||| || || || || |||||||| || || | ||||||||
Sbjct 12769 GCTAGGTCTAGATGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 12828
Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590
|| ||||||| ||| || ||||| | || || | || | | | | | | ||||
Sbjct 12829 GCGCGGTTAATAATATCGGCCCAA----TAATTACACGACCTTGACTATCAACTACAGAT 12884
Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650
||||| || ||||| || || | | | || ||||| ||| | || | | || ||||
Sbjct 12885 TGGTTGAAATTGAAGCCGTTTAGGATAAATGCCATAGTACTAATACCTAAAGTAGTAAAC 12944
Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710
|| |||||||| |||||||| ||| | | |||||||| | | | | |||| || ||
Sbjct 12945 CATATACCTACTACAGGCCAAGCAACTAAGAAGAAATGTAAAGAATGAGAATCGTTGAAA 13004
Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770
||||||||||||||||| | || |||||||| || |||||||| |||||||| | |||
Sbjct 13005 CTAGCATATTGGAAGATGAATCGGCCAAAATAACCATGAGCAGCTACAATATTCTTAGTT 13064
Query 21771 TCTTCCTCTTGACCAAACTTGTAACC 21796
|| |||||||||||||| |||||||
Sbjct 13065 TCCTCCTCTTGACCAAATCTGTAACC 13090
>seq29420
Length=7120
Score = 159 bits (176), Expect = 1e-34
Identities = 249/356 (70%), Gaps = 0/356 (0%)
Strand=Plus/Minus
Query 21984 GGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCA 22043
|||||| |||||||||| || || |||| || || | | ||| | || ||| |||
Sbjct 3771 GGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGTAGTAGCA 3712
Query 22044 GCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTA 22103
|| || |||||| | || ||||||||| ||||| || | ||| || || || | |||
Sbjct 3711 GCCGCAACAGGAACTGAATACGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTA 3652
Query 22104 AGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGT 22163
||||||||||| || ||||||||| | || |||| | |||||| || || | ||
Sbjct 3651 AGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGCAAAACATTTAGC 3592
Query 22164 TGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAG 22223
| | ||||| || ||||| | ||||||||||| | ||||||||||| ||||| ||
Sbjct 3591 TCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCATATTGGATAA 3532
Query 22224 AAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCA 22283
||||| | || || ||| | |||||| | | | || || || || ||||| ||
Sbjct 3531 AAGTGCAAACCTATAGCAGCAGAAGTCGGAATAATGTCACCAGAGATAATATTGTTTCCG 3472
Query 22284 TACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGC 22339
| | || || |||| || ||||| || || ||||| || || || || || ||
Sbjct 3471 TGAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGAGC 3416
>seq59
Length=339703
Score = 149 bits (164), Expect = 2e-31
Identities = 187/257 (73%), Gaps = 0/257 (0%)
Strand=Plus/Minus
Query 21744 CCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTC 21803
|| |||| ||| |||||||| |||||||||||||||||||||||| ||||||| | ||
Sbjct 52565 CCATGAGTAGCTACAATATTATAAGTCTCTTCCTCTTGACCAAACCTGTAACCTTCATTA 52506
Query 21804 TGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATA 21863
|| | | ||| || || || | ||| | ||| || |||| ||| ||||||
Sbjct 52505 GTAGATTCATTTTCTGTGGTTTCCCTAATCAAACTCGAGGTTACCAAAGAACCATGCATA 52446
Query 21864 GCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATA 21923
|| ||| | || || ||||| || || || | | ||||||||| || ||||||
Sbjct 52445 ACACTGAATAGGGAGCCGCCGAATACACCAGCTACGCTTAACATGTGAAATGGGTGCATA 52386
Query 21924 AGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAG 21983
|| || ||||||||||| ||||| || | |||| ||||||| || || || | || |
Sbjct 52385 AGGATGTTGTGCTCAGCATGGAATACAATCATGAAGTTGAAAGTACCAGAAACTCCTAGA 52326
Query 21984 GGCATAGCATCAGAAAA 22000
|||||| ||||||||||
Sbjct 52325 GGCATACCATCAGAAAA 52309
>seq8630
Length=23577
Score = 123 bits (136), Expect = 7e-24
Identities = 108/133 (81%), Gaps = 1/133 (1%)
Strand=Plus/Minus
Query 21665 AGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAA 21724
|||||| || || | |||||||| | | ||| ||||| || || ||||||||||||||
Sbjct 7629 AGGCCAAGCGGCTAATAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAA 7570
Query 21725 GATAAGCCGACCAAAATAGCCGTGAGCAGC-AACAATATTGTAAGTCTCTTCCTCTTGAC 21783
||| | ||||||||||| || |||||||| || ||||| ||||| || ||||||||||
Sbjct 7569 GATGAATCGACCAAAATAACCATGAGCAGCGTACGATATTCTAAGTTTCCTCCTCTTGAC 7510
Query 21784 CAAACTTGTAACC 21796
|||| ||||||||
Sbjct 7509 CAAATTTGTAACC 7497
>seq4835
Length=43218
Score = 104 bits (114), Expect = 7e-18
Identities = 106/138 (77%), Gaps = 8/138 (6%)
Strand=Plus/Minus
Query 21665 AGGCCAGGCAGCAAGAAAGAAATG------AAGACTACGGGAATTATTAAAGCTAGCATA 21718
|||||| || || | |||||||| |||| ||| || || || || ||||||||
Sbjct 9194 AGGCCAAGCGGCTAATAAGAAATGTAATTAAAGA--ACGAGATTTGTTGAAACTAGCATA 9137
Query 21719 TTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTC 21778
||||||||| | | |||||||| || |||||||| || ||||| ||||| || |||||
Sbjct 9136 TTGGAAGATGAATCTGCCAAAATAACCATGAGCAGCTACGATATTCTAAGTTTCCTCCTC 9077
Query 21779 TTGACCAAACTTGTAACC 21796
||||||||| |||||||
Sbjct 9076 TTGACCAAATCTGTAACC 9059
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145535051545320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |