Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq5412 320 2e-82 seq8546 199 5e-46 seq29420 174 2e-38 seq25216 165 9e-36 seq59 138 1e-27 seq1372 122 1e-22 seq67 120 3e-22 >seq5412 Length=31808 Score = 320 bits (354), Expect = 2e-82 Identities = 488/693 (70%), Gaps = 8/693 (1%) Strand=Plus/Plus Query 124294 ATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTTTCTTC 124353 ||| |||||||| | || ||||| ||||| || || ||||| || || || || ||||| Sbjct 14598 ATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTCTCTTC 14657 Query 124354 TTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTGATTAG 124413 ||||| || | | | ||||| | || || || | ||||| ||||| ||||| | Sbjct 14658 CTCTTGACCAAGCCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 14717 Query 124414 AGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCTGC 124473 | || || || | |||||||||| | ||||| | || |||| | || || Sbjct 14718 ACTCGAGGTTACCAAAGAACCATGCCT------GAATAGGTAGCCGTCGAATACACCAGC 14771 Query 124474 TACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACAT 124533 ||| ||| |||||| || || ||||| || ||||| ||||| || ||||| || | ||| Sbjct 14772 TACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCAT 14831 Query 124534 AAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAA 124593 |||||||||||||| || || || || |||||||||| ||| || || | ||||| Sbjct 14832 GAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATTAGAAAAGCTTCCTTAACCAAT 14891 Query 124594 TGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACAGAT 124653 |||||| | ||||| ||||| |||| | || || |||||||| |||||| || Sbjct 14892 TGGGTAGATCAAGAAAACAGCAGTAGCAGTCGCAACAGGGGCTGAATACGCAACAACAAT 14951 Query 124654 CCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCTGAAAT 124713 |||||| ||||| || | | | | |||||||||| | |||||||| | | Sbjct 14952 CCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTAC 15011 Query 124714 ACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCATTCATC 124773 ||||| | |||||| |||| | | || ||| ||||||||||| || ||||||||||| Sbjct 15012 ACCAAGTAAGAAGTGAAAAACAATTAGCTCATATGGACCACCATTGTATAACCATTCATC 15071 Query 124774 AACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGATGGAAC 124833 ||||| ||| |||||||| ||||| || ||||| | || ||||| | | ||| Sbjct 15072 AACAGATGCAGCTTCCCATATTGGATAAAAGTGCAAACCTATAGCAGCAAAAGTCTGAAT 15131 Query 124834 AACTGCACCAGAGATGATGTTGTTACCATATAAGAA-AGAACCCGCTACTGGTTCTCTGA 124892 || ||||||||||| || ||||| || || ||||| ||| || || ||||| | | Sbjct 15132 AATGGCACCAGAGATAATATTGTTTCCGTA-AAGAAGAGATCCAAAAACAGGTTCACGAA 15190 Query 124893 TTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAAACATGCTGCTGCTG 124952 | || || ||||| || ||||| || ||||| || || | || || | || ||| | Sbjct 15191 TACCATCAATATCTACCGGAGGAGCAGCAATGAAGGCTATAATAAATACGGATGTTGCGG 15250 Query 124953 TGAGTAAGCATGGAATCATTAGAACACCAAACC 124985 | | |||| |||||||| | ||| ||||||| Sbjct 15251 TCAATAAGGTAGGAATCATCAAAACGCCAAACC 15283 >seq8546 Length=31398 Score = 199 bits (220), Expect = 5e-46 Identities = 312/443 (70%), Gaps = 10/443 (2%) Strand=Plus/Plus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 ||||||||||| ||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 12769 GCTAGGTCTAGATGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 12828 Query 124109 GCTCTGTTTAGAACATCACCCCA-TGTTGGGACGATTTTTCCGTTAGCATCAACAACTGA 124167 || | ||| | || ||| |||| | | |||| || | | |||||| || || Sbjct 12829 GCGCGGTTAATAATATCGGCCCAATAATTACACGA-----CCTTGACTATCAACTACAGA 12883 Query 124168 TTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAA 124227 |||||| || ||||| || || | | | |||||||| || | ||||| | || || || Sbjct 12884 TTGGTTGAAATTGAAGCCGTTTAGGATAAATGCCATAGTACTAATACCTAAAGTAGTAAA 12943 Query 124228 CCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTG--AAGACTTCTTGAGTTGTTG 124285 ||||| || ||| ||||| || | ||| |||||| || |||| | || | |||| Sbjct 12944 CCATATACCTACTACAGGCCAAGCAACTAAGAAGAAATGTAAAGAATGA--GAATCGTTG 13001 Query 124286 AATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTAT 124345 || |||||| |||||||| | || ||||| ||||| || || ||||| || || | Sbjct 13002 AAACTAGCATATTGGAAGATGAATCGGCCAAAATAACCATGAGCAGCTACAATATTCTTA 13061 Query 124346 GTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCT 124405 ||||| || ||||| || || | ||||| | || || | | ||||| ||||| Sbjct 13062 GTTTCCTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTTATTTTCTGTGGTTTCC 13121 Query 124406 CTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAAC 124465 ||||| | | ||| || || | |||||||||||| | ||||| || || ||||| Sbjct 13122 CTGATCAAACTAGAGGTTACCAAAGAACCATGCATAACACTGAATATGGAGCCGCCGAAT 13181 Query 124466 ATTCCTGCTACTCCTGCCATGTG 124488 | || ||||| ||| |||||| Sbjct 13182 ACACCAGCTACGCCTAACATGTG 13204 >seq29420 Length=7120 Score = 174 bits (192), Expect = 2e-38 Identities = 256/360 (71%), Gaps = 2/360 (1%) Strand=Plus/Minus Query 124559 AGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAAT 124618 || |||||||||||||| || || ||||||| |||||| | ||||| | || Sbjct 3774 AGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGTAGTA 3715 Query 124619 GCAGCAGATACTGGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTAT 124678 ||||| | || || ||||||| |||||| |||||||| ||||| || | | | | Sbjct 3714 GCAGCCGCAACAGGAACTGAATACGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 3655 Query 124679 GATAGTTCCCACTGTCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACC 124738 |||||||||| | |||||||| | | ||||| | |||||| |||| Sbjct 3654 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGCAAAACATTT 3595 Query 124739 AACTGATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGG 124798 | || ||||||||||||||| || |||||||||||||||| ||| |||||||| ||||| Sbjct 3594 AGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCATATTGGA 3535 Query 124799 TAGAAGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTA 124858 || ||||| | || ||||| || | |||| || |||||||||| || ||||| Sbjct 3534 TAAAAGTGCAAACCTATAGCAGCAGAAGTCGGAATAATGTCACCAGAGATAATATTGTTT 3475 Query 124859 CCATATAAGAA-AGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGC 124917 || | ||||| ||| || | || ||||| | || || || ||||| || ||||| || Sbjct 3474 CCGT-GAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGAGC 3416 >seq25216 Length=8180 Score = 165 bits (182), Expect = 9e-36 Identities = 203/276 (74%), Gaps = 1/276 (0%) Strand=Plus/Plus Query 124396 TGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGA 124455 ||| ||||| ||||| | | || || || | |||||||||||| || ||||| || Sbjct 6982 TGTGGTTTC-CTGATCAAACTCGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGA 7040 Query 124456 TCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTC 124515 || ||||| | || |||| ||| |||||| || || ||||| || ||||| ||||| Sbjct 7041 GCCGCCGAATACACCATCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTC 7100 Query 124516 TGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGA 124575 | ||||| || | ||| |||||||||||||| || || || || |||||||||||||| Sbjct 7101 AGACTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGA 7160 Query 124576 GAATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGC 124635 || || ||||||| |||||| | ||||| ||||| ||||| | || || || Sbjct 7161 AAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGC 7220 Query 124636 TGAATAAGCAACACAGATCCAAGGACGCATTCCTAA 124671 |||||| |||| | |||||||| ||||| || || Sbjct 7221 TGAATACGCAATAGCAATCCAAGGGCGCATACCAAA 7256 >seq59 Length=339703 Score = 138 bits (152), Expect = 1e-27 Identities = 186/259 (72%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 124320 AACCGTGTGCTGCTACTATGTTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGT 124379 |||| || | ||||| || || || || ||||| ||||| || ||| | ||||| | | Sbjct 52567 AACCATGAGTAGCTACAATATTATAAGTCTCTTCCTCTTGACCAAACCTGTAACCTTCAT 52508 Query 124380 TCTGTGACTCTTGCTCTGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCA 124439 | || || | ||||| ||||| || || | | || || || | ||||||||||| Sbjct 52507 TAGTAGATTCATTTTCTGTGGTTTCCCTAATCAAACTCGAGGTTACCAAAGAACCATGCA 52448 Query 124440 TTGCTGAGAATAAAGATCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCA 124499 | | ||||| || || ||||| | || ||||| | | |||||| || || |||| Sbjct 52447 TAACACTGAATAGGGAGCCGCCGAATACACCAGCTACGCTTAACATGTGAAATGGGTGCA 52388 Query 124500 TTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAA 124559 | || ||||| ||||| || ||||| || | ||| |||||||||||||| || | || | Sbjct 52387 TAAGGATGTTGTGCTCAGCATGGAATACAATCATGAAGTTGAAAGTACCAGAAACTCCTA 52328 Query 124560 GTGGCATACCATCAGAGAA 124578 | |||||||||||||| || Sbjct 52327 GAGGCATACCATCAGAAAA 52309 >seq1372 Length=73576 Score = 122 bits (134), Expect = 1e-22 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| ||||| || ||||| || ||||||| | | ||| || || | || || ||||| Sbjct 58559 CATAGCCTCGGCCGCTGCTGTGCCTTCATCAAGCAAAGAAGCATTAGACATAGGCAATCC 58500 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||||| || || || | ||||| ||||| |||| | |||||||||||||||||| || Sbjct 58499 GGTAAGATCCGTAATCATGGTTTGATAATTCAATAGGGATTCCAATCTTCCCTGAGAGAT 58440 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTC 140023 ||||||||| || |||||||| || ||||||| |||||| || Sbjct 58439 CTCAGCTTGGTAAGGAGTGTACTGAGTATACCAACCAGGATTTTC 58395 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 139314 GCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTT 139373 || || || || |||||||| || || || |||||||| || ||||| ||||| || || Sbjct 59101 GCNTGAGCAGTACAGATGTTGCTTGTAGCCTTGTCTCTCCTGATATGTTGCTCCCTTGTC 59042 Query 139374 TGTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTC 139431 || | || | | | ||| | || ||| || |||| ||| || | ||| | Sbjct 59041 TGCATAGCCATACGTAAAGCATGCTTACCTGACGAATCAACACTAACT--CCAATAATCC 58984 Query 139432 TGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTC 139491 | || || ||| |||||||||| | | || || ||||| || ||||||||||| | Sbjct 58983 TCCCGGGCATCAACCTCTTATACTCTTGAGAAGTAGCCAAGAAAGCGGCATGAGGACCAC 58924 Query 139492 CGTATCCCATAGGAATACCAAACCTTTG 139519 | || |||||||| | ||||||||| || Sbjct 58923 CATACCCCATAGGTACACCAAACCTCTG 58896 >seq67 Length=256564 Score = 120 bits (132), Expect = 3e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| ||||| || ||||| || ||||||| | | ||| || || | || || ||||| Sbjct 184166 CATAGCCTCGGCCGCTGCTGTGCCTTCATCAAGCAAAGAAGCATTCGACATAGGCAATCC 184225 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||||| || || || | ||||| || || |||| | |||||||||||| ||||| || Sbjct 184226 AGTAAGATCCGTAATCATGGTTTGATAGTTCAATAGGGATTCCAATCTTCCTTGAGAGAT 184285 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038 ||||||||| || |||||||| || ||||||| ||||||||| | | || | | | Sbjct 184286 CTCAGCTTGGTAAGGAGTGTATTGAGTATACCAACCAGGATTCTCCATTATATTCCTCAG 184345 Query 140039 TATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTATAA 140082 || ||||| || || ||| |||||| || ||| |||| Sbjct 184346 AATCACTGGTGGGACAAAGGTATTATAGTAACCCATACCAATAA 184389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576193196176880