Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq5412 325 5e-84 seq25216 179 5e-40 seq29420 174 2e-38 seq3927 163 4e-35 seq8546 159 5e-34 seq59 149 8e-31 seq8630 100 4e-16 >seq5412 Length=31808 Score = 325 bits (360), Expect = 5e-84 Identities = 487/692 (70%), Gaps = 6/692 (1%) Strand=Plus/Plus Query 26979 ATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTC 27038 |||||||||||| || || || || || ||||| || || ||||| || || |||||||| Sbjct 14598 ATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTCTCTTC 14657 Query 27039 TTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTCACGGACGAG 27098 |||||||| | | | ||||| | || || ||| |||| || || || | || | Sbjct 14658 CTCTTGACCAAGCCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 14717 Query 27099 TGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGC 27158 || || |||| | || ||| | ||| || | || ||||||| ||||| Sbjct 14718 ACTCGAGGTTACCAAAGAACCATGCCT------GAATAGGTAGCCGTCGAATACACCAGC 14771 Query 27159 AACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCAT 27218 || || | |||||| || |||||||||||||| ||||| || ||||||||||||| ||| Sbjct 14772 TACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCAT 14831 Query 27219 GTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAA 27278 | |||| ||||||||||| || || ||||||||| ||| || || |||| ||| | Sbjct 14832 GAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATTAGAAAAGCTTCCTTAACCAAT 14891 Query 27279 AGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGAT 27338 || |||| | ||| || ||| | |||| || || || || ||||| || ||| || Sbjct 14892 TGGGTAGATCAAGAAAACAGCAGTAGCAGTCGCAACAGGGGCTGAATACGCAACAACAAT 14951 Query 27339 CCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAGCATAGAT 27398 ||| || |||||||| | ||| | |||||||||||||| ||||| ||| | | Sbjct 14952 CCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTAC 15011 Query 27399 GCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATC 27458 || | | |||||| || || | || | | |||||||| || || ||||| ||||| Sbjct 15012 ACCAAGTAAGAAGTGAAAAACAATTAGCTCATATGGACCACCATTGTATAACCATTCATC 15071 Query 27459 GAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGAC 27518 | ||||| |||||||| ||||| || ||||| | ||| || ||| || | | | Sbjct 15072 AACAGATGCAGCTTCCCATATTGGATAAAAGTGCAAACCTATAGCAGCAAAAGTCTGAAT 15131 Query 27519 AACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAAT 27578 || |||||||| || || ||||| || || | ||| || ||| ||| ||||||||||| Sbjct 15132 AATGGCACCAGAGATAATATTGTTTCCGTAAAGAAGAGATCCAAAAACAGGTTCACGAAT 15191 Query 27579 ACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAAGCAGACAGTTGCTGC 27638 ||| |||||||| || || || || || ||||| || | ||| || | ||||| | Sbjct 15192 ACCATCAATATCTACCGGAGGAGCAGCAATGAAGGCTATAATAAATACGGATGTTGCGGT 15251 Query 27639 TAACAGTGTTGGGATCATCAGTACACCGAACC 27670 || | || || ||||||| || || |||| Sbjct 15252 CAATAAGGTAGGAATCATCAAAACGCCAAACC 15283 >seq25216 Length=8180 Score = 179 bits (198), Expect = 5e-40 Identities = 183/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 27118 CCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 27177 || ||||||||| ||| || || || |||||||| ||| | || || | |||||| || Sbjct 7018 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCATCTACGCCTAACATGTGAAAT 7077 Query 27178 GGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAG 27237 |||||||||||||| ||||| || | ||||||||||| |||| |||| ||||||||||| Sbjct 7078 GGGTGCATAAGGATGTTGTGCTCAGACTGGAATACAATCATGAAGTTGAAAGTACCAGAA 7137 Query 27238 ATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACT 27297 || || ||||||||| |||| || || |||||||| | || |||| | ||| || Sbjct 7138 ATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACA 7197 Query 27298 GCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCATGGACGCATACCTAA 27356 ||| | ||||| || || ||||| ||||| || | | ||||| || |||||||| || Sbjct 7198 GCAGTAGCAGCCGCAACAGGAGCTGAATACGCAATAGCAATCCAAGGGCGCATACCAAA 7256 >seq29420 Length=7120 Score = 174 bits (192), Expect = 2e-38 Identities = 254/359 (71%), Gaps = 0/359 (0%) Strand=Plus/Minus Query 27244 AGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTC 27303 ||||||||| |||| || || |||||||| | || |||| | ||| | | | | Sbjct 3774 AGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGTAGTA 3715 Query 27304 GCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCATGGACGCATACCTAAACGATAT 27363 ||||| || || ||| | ||||| || ||| ||||| || |||||||| | ||| | Sbjct 3714 GCAGCCGCAACAGGAACTGAATACGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 3655 Query 27364 GAGAGTTCCCACTCACGTCCCATATAAGCATAGATGCCGATAAGGAAGTGGAAGACTACC 27423 |||||||||||||| ||||| ||| | | || | | |||||| || || Sbjct 3654 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGCAAAACATTT 3595 Query 27424 AGTTGGAAAGGACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGG 27483 || | |||||||||| || || ||||| ||||| | ||||| |||||||| ||||| Sbjct 3594 AGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCATATTGGA 3535 Query 27484 TAGAAGTGGAGACCGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTG 27543 || ||||| | ||| || ||| ||| | || | || ||||||| || || ||||| Sbjct 3534 TAAAAGTGCAAACCTATAGCAGCAGAAGTCGGAATAATGTCACCAGAGATAATATTGTTT 3475 Query 27544 CCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGC 27602 || | | ||| || |||| ||| |||||||||||||| |||||||| || || || || Sbjct 3474 CCGTGAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGAGC 3416 >seq3927 Length=49767 Score = 163 bits (180), Expect = 4e-35 Identities = 186/246 (76%), Gaps = 3/246 (1%) Strand=Plus/Minus Query 23871 GTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAA 23930 ||||| |||||||| || || | ||||| | ||| | ||| || | || ||||| ||| Sbjct 26250 GTCCAATTATGAAACCCTTGAAAAAAGAGGATGAATC-GAATATAGATGCTACACCAAAA 26192 Query 23931 CTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACACGAAT 23990 || ||||||||||||||| ||||| || | ||||| || || || || || || || Sbjct 26191 CTAGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATTAGAAACACCGAAACAAAA 26132 Query 23991 ACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGA-CGTGC 24049 | ||||| |||||| | || || || ||||| || || || | | || ||| || || Sbjct 26131 ATGGCAATTGGACCAAATAATGCTATTGCATTATAAGGTCGCAATTGAAC-AGATCGAGC 26073 Query 24050 CAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAACAAA 24109 |||||||| |||||||||||||||||||| ||| |||| || || |||||||||||||| Sbjct 26072 AAGTTCAAATTGACGTAACATAAAACCTATTAGTCCAAAAGCGCCATGGAGAGCAACAAA 26013 Query 24110 GGACCA 24115 | ||| Sbjct 26012 AGTCCA 26007 >seq8546 Length=31398 Score = 159 bits (176), Expect = 5e-34 Identities = 304/445 (68%), Gaps = 6/445 (1%) Strand=Plus/Plus Query 26730 AGCAGCAAGATCCA-ATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAA 26788 |||||| || || | |||||| ||||| || || | ||| || || || || | |||| Sbjct 12765 AGCAGCTAGGTCTAGATGGAAG-TTATGAGCATTACGTTCATGCATAACTTCCATACCAA 12823 Query 26789 GACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCA 26848 | ||| ||||| | || || |||||| || |||||||| || ||||| | Sbjct 12824 GGTTAGCGCGGTTAATAATATCGGCCCAATAATT----ACACGACCTTGACTATCAACTA 12879 Query 26849 CAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGG 26908 |||| || ||||| ||||| ||||| || | || ||||| || | ||| | | | Sbjct 12880 CAGATTGGTTGAAATTGAAGCCGTTTAGGATAAATGCCATAGTACTAATACCTAAAGTAG 12939 Query 26909 TGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGT 26968 | ||||| || || || || ||||| ||| | | |||||| || || ||| | || | || Sbjct 12940 TAAACCATATACCTACTACAGGCCAAGCAACTAAGAAGAAATGTAAAGAATGAGAATCGT 12999 Query 26969 TGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGT 27028 |||| ||||||||||||||| || || || || || ||||| || || || || || | Sbjct 13000 TGAAACTAGCATATTGGAAGATGAATCGGCCAAAATAACCATGAGCAGCTACAATATTCT 13059 Query 27029 AGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCT 27088 || || || |||||||| || | ||||| | || || | | |||| || || | Sbjct 13060 TAGTTTCCTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTTATTTTCTGTGGTTT 13119 Query 27089 CACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGA 27148 | | || | ||| || |||| | || |||||| || ||| | || || |||| Sbjct 13120 CCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAACACTGAATATGGAGCCGCCGA 13179 Query 27149 ATACCCCAGCAACACCGAGCATGTG 27173 |||| ||||| || || | |||||| Sbjct 13180 ATACACCAGCTACGCCTAACATGTG 13204 >seq59 Length=339703 Score = 149 bits (164), Expect = 8e-31 Identities = 187/257 (73%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 27007 CCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTC 27066 ||||| | || || || || || |||||||| |||||||| ||| | ||||| | || Sbjct 52565 CCATGAGTAGCTACAATATTATAAGTCTCTTCCTCTTGACCAAACCTGTAACCTTCATTA 52506 Query 27067 TGTGACTCAGTTTCAGTCGTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATA 27126 || ||| |||| || || || | | | || || |||| | || |||||| Sbjct 52505 GTAGATTCATTTTCTGTGGTTTCCCTAATCAAACTCGAGGTTACCAAAGAACCATGCATA 52446 Query 27127 GCAGAGAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATA 27186 || ||| || || || |||||||| ||||| || | | |||||| || ||||||||| Sbjct 52445 ACACTGAATAGGGAGCCGCCGAATACACCAGCTACGCTTAACATGTGAAATGGGTGCATA 52386 Query 27187 AGGATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGA 27246 ||||| ||||| || || |||||||||| |||| |||| ||||||||||| | || ||| Sbjct 52385 AGGATGTTGTGCTCAGCATGGAATACAATCATGAAGTTGAAAGTACCAGAAACTCCTAGA 52326 Query 27247 GGCATAGCATCGGAGAA 27263 |||||| |||| || || Sbjct 52325 GGCATACCATCAGAAAA 52309 >seq8630 Length=23577 Score = 100 bits (110), Expect = 4e-16 Identities = 102/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 26929 GGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAAG 26988 ||||| || || | ||||| || || ||||| || |||||||| ||||||||||||| Sbjct 7628 GGCCAAGCGGCTAATAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAG 7569 Query 26989 ATCAAACGACCGAAGTAGCCATGTGCTGCG-ACGATGTTGTAGGTCTCTTCTTCTTGACC 27047 || || ||||| || || ||||| || ||| ||||| || || || || || |||||||| Sbjct 7568 ATGAATCGACCAAAATAACCATGAGCAGCGTACGATATTCTAAGTTTCCTCCTCTTGACC 7509 Query 27048 GAACTTATAACC 27059 || || ||||| Sbjct 7508 AAATTTGTAACC 7497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 662270129544080