Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2652 111 2e-19 seq4197 96.9 4e-15 seq6909 87.8 2e-12 seq2786 87.8 2e-12 seq270 87.8 2e-12 >seq2652 Length=45542 Score = 111 bits (122), Expect = 2e-19 Identities = 199/288 (69%), Gaps = 12/288 (4%) Strand=Plus/Plus Query 175308 GGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGT 175367 |||| ||| || ||||| ||||| || || || | || | ||||| ||| | || Sbjct 42937 GGGTCCGCCTGGGACGGGGAAGACGCTGCTGGCGAGGGCAGTGGCGGGGGAAGCCGGGGT 42996 Query 175368 CCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAA 175427 || ||| || ||| | ||| | | || |||||| |||| || || || || ||| Sbjct 42997 GCCCTTCTTCTCTTGCGCGGCCTCTGAGTTCGTGGAGCTGTTCGTAGGGGTTGGGGCCTC 43056 Query 175428 AAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCA 175483 ||||| | ||||| ||||| | ||| || | ||| || || |||||||||| Sbjct 43057 GAGGGTGAGGGATCTGTTTGAGAAGGCC----AAGAGCAAGGCCCCCTGCATTGTCTTCA 43112 Query 175484 TTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGA 175541 |||||||||||||||| ||||| | ||| | |||| || ||| || | ||||| Sbjct 43113 TTGATGAGATTGATGCTGTGGGGAGGCAGAGAGGCGCCGGCCTGGGGGGC--GGCAATGA 43170 Query 175542 CGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 |||||||| || || || || || || | |||||||||||||| || Sbjct 43171 TGAGAGAGAGCAGACGATCAACCAGCTGTTGACCGAGATGGATGGTTT 43218 >seq4197 Length=36674 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 |||||||| |||||| | |||| ||||| || || || |||||||||||||| || Sbjct 23583 TCCTTCGCTGAGCGCATAGTTGCTTTTGCCTGCGTTGAAGGTATCTTCTTCTCTGGAAGC 23524 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||||| || | |||| | || ||||| || || ||||| || ||| |||||| || Sbjct 23523 TTCTGCGCGATATTTTGGCTAAAAAAGCGAGGACTGATGCCTGGACTAACCTTCTCGAAC 23464 Query 65188 GAACTTATTTCCCGAGATGAGGG 65210 || | || ||||| || || || Sbjct 23463 GAGTTGATCTCCCGCGACGAAGG 23441 >seq6909 Length=27413 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 177573 CACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGTTGAAGCAT 177632 ||| | ||||| ||| |||| || || ||||| ||||| | || |||||||||||||| Sbjct 25806 CACTGTGTGTGAGTCCTCCGTTGCCACGACATAGTCATCTGGCTTGTCTTGTTGAAGCAT 25747 Query 177633 GAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCGTTGAGGTT 177692 | |||||| || ||||||||||| ||| |||||| || || | ||| | ||||| Sbjct 25746 CATCCACATTGCCTCAACATAGTCTCCTGCAAAACCCCAATCCCTTGAAGCCTGAAGGTT 25687 Query 177693 ACCGAG 177698 ||||| Sbjct 25686 TCCGAG 25681 >seq2786 Length=62223 Score = 87.8 bits (96), Expect = 2e-12 Identities = 173/255 (68%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| ||||||||||||||||| |||||| || || || || || || | | || Sbjct 37493 TTTGTTGAGATGTTTGTTGGTGTTGGTGCCTCTAGAGTCCGTGACCTATTCAAGAAAGCA 37552 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || || || || ||||||| |||||||| || || | ||| | Sbjct 37553 AAGGAGAATGCTCCTTGCATAGTGTTTGTTGATGAAATTGATGCTGTTGGTAGACAAAGA 37612 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | | || | | || ||||| || ||||||||||| | || ||||| | || Sbjct 37613 GGTACAGGGGTTGGTGGAGGGAATGATGAAAGAGAACAAACTCTAAACCAACTTTTGACT 37672 Query 175576 GAGATGGATGGCTTTGA---CAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGC 175632 || |||||||| || || |||| ||||| ||| | |||||||| || || || | Sbjct 37673 GAAATGGATGGATTCGAGGGCAAT---ACTGGAATTATCGTTATTGCTGCTACCAACAGA 37729 Query 175633 GTGGATATCCTTGAT 175647 | || || |||||| Sbjct 37730 GCAGACATTCTTGAT 37744 >seq270 Length=105985 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 |||||||||||||| | | || || || || ||||| || |||||||||||||| Sbjct 91955 TCCTTCGCCGAGCGAATCGTCGCTTTCGCTTGCGTGGAAGGCATCTTCTTCTCCGGAAGC 91896 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||||| | | ||| | || || || ||||| |||||||| | |||||| || Sbjct 91895 TTCTGCGCCGTATTCTGGCTAAAAAAACGCGGTCTGATGCCAGGATTGACCTTCTCCAAC 91836 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || ||||| ||| |||| || || | ||| || ||||| Sbjct 91835 GAGCTTATATCCAGAGACGAAGGCTTACACTGTGATTTTGC 91795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593679265030720