Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq5412 361 7e-95 seq8546 217 2e-51 seq59 206 3e-48 seq25216 174 2e-38 seq29420 158 1e-33 seq4835 86.0 8e-12 seq8630 84.2 3e-11 seq13559 82.4 9e-11 >seq5412 Length=31808 Score = 361 bits (400), Expect = 7e-95 Identities = 495/692 (72%), Gaps = 6/692 (1%) Strand=Plus/Plus Query 8136 ATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTC 8195 ||| ||||||||||||| ||||| || ||||||||||| || |||||||| |||||||| Sbjct 14598 ATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTCTCTTC 14657 Query 8196 TTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAG 8255 |||||||||| | | ||||| | || ||| || | ||| || || || ||||| | Sbjct 14658 CTCTTGACCAAGCCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 14717 Query 8256 AGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGC 8315 | || || || |||||||| ||| ||||| || | || |||| | ||| || Sbjct 14718 ACTCGAGGTTACCAAAGAACCATGC------CTGAATAGGTAGCCGTCGAATACACCAGC 14771 Query 8316 TACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACAT 8375 ||| ||| ||| || || || |||||||| ||||| ||||| || |||||||| | ||| Sbjct 14772 TACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCAT 14831 Query 8376 GAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAA 8435 |||||| || ||||||||||| ||||||||||| |||| ||| || || | ||||| Sbjct 14832 GAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATTAGAAAAGCTTCCTTAACCAAT 14891 Query 8436 TGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGAT 8495 ||| || | ||||| || || ||||| | || || || ||| || ||| || Sbjct 14892 TGGGTAGATCAAGAAAACAGCAGTAGCAGTCGCAACAGGGGCTGAATACGCAACAACAAT 14951 Query 8496 CCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAAT 8555 ||| || | |||||| | ||| | | ||||||| | |||||||||| || | Sbjct 14952 CCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTAC 15011 Query 8556 TCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATC 8615 |||| | |||||| || | || | || ||||||||| || || || ||||| ||||| Sbjct 15012 ACCAAGTAAGAAGTGAAAAACAATTAGCTCATATGGACCACCATTGTATAACCATTCATC 15071 Query 8616 TAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAAC 8675 | | ||||||||||| || ||||| ||||| || || ||||| ||| ||| Sbjct 15072 AACAGATGCAGCTTCCCATATTGGATAAAAGTGCAAACCTATAGCAGCAAAAGTCTGAAT 15131 Query 8676 GACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAAT 8735 | ||||||||||| || |||||||| || | | || || ||||||||||||||| Sbjct 15132 AATGGCACCAGAGATAATATTGTTTCCGTAAAGAAGAGATCCAAAAACAGGTTCACGAAT 15191 Query 8736 ACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGC 8795 ||| || ||||| || || ||||||||||| || || | ||||| | | || | Sbjct 15192 ACCATCAATATCTACCGGAGGAGCAGCAATGAAGGCTATAATAAATACGGATGTTGCGGT 15251 Query 8796 TAACAAGCAAGGAATCATTAGAACTCCAAACC 8827 || ||| ||||||||| | ||| ||||||| Sbjct 15252 CAATAAGGTAGGAATCATCAAAACGCCAAACC 15283 >seq8546 Length=31398 Score = 217 bits (240), Expect = 2e-51 Identities = 322/448 (72%), Gaps = 20/448 (4%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| ||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 12769 GCTAGGTCTAGATGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 12828 Query 7951 GCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCA--TTAAC-ATCAACAA 8005 || | ||| ||||| || |||| || ||| || | || || |||||| | Sbjct 12829 GCGCGGTTAATAATA--TCGGCCCA-------ATAATTACACGACCTTGACTATCAACTA 12879 Query 8006 CTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAG 8065 | |||||||| || || || ||||| ||| |||||||||| || | |||||| | || || Sbjct 12880 CAGATTGGTTGAAATTGAAGCCGTTTAGGATAAATGCCATAGTACTAATACCTAAAGTAG 12939 Query 8066 TTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTG--AAGACTTCTACT-GT 8122 | ||||| | || ||| || || | | | | | |||||| || |||| | | | || Sbjct 12940 TAAACCATATACCTACTACAGGCCAAGCAACTAAGAAGAAATGTAAAGAATGAGAATCGT 12999 Query 8123 TGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATAT 8182 || |||| | ||||| |||||||| |||| ||||| || ||||||||||| ||||||| Sbjct 13000 TG--AAACTA-GCATATTGGAAGATGAATCGGCCAAAATAACCATGAGCAGCTACAATAT 13056 Query 8183 TATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTG 8242 | | || || || ||||||||||| | ||||| | || || | | ||| || | Sbjct 13057 TCTTAGTTTCCTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTTATTTTCTGTGG 13116 Query 8243 TCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCAC 8302 | || ||||| | | ||| || || |||||||| |||||| ||||||| | || || | Sbjct 13117 TTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAACACTGAATATGGAGCCGC 13176 Query 8303 CGAACATACCTGCTACCCCTGCCATATG 8330 |||| | ||| ||||| ||| ||| || Sbjct 13177 CGAATACACCAGCTACGCCTAACATGTG 13204 >seq59 Length=339703 Score = 206 bits (228), Expect = 3e-48 Identities = 200/257 (78%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 8164 CCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTC 8223 ||||||| ||| ||||||||||| |||||||| |||||||||||| | ||||| | || Sbjct 52565 CCATGAGTAGCTACAATATTATAAGTCTCTTCCTCTTGACCAAACCTGTAACCTTCATTA 52506 Query 8224 TGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATA 8283 ||| || | ||| || || || || || | | || || || |||||||| |||||| Sbjct 52505 GTAGATTCATTTTCTGTGGTTTCCCTAATCAAACTCGAGGTTACCAAAGAACCATGCATA 52446 Query 8284 GCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATA 8343 ||||||| || || || ||||| | ||| ||||| | | ||| || || || |||||| Sbjct 52445 ACACTGAATAGGGAGCCGCCGAATACACCAGCTACGCTTAACATGTGAAATGGGTGCATA 52386 Query 8344 AGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGA 8403 || ||||| ||||| || |||||||| | ||||||||| || |||||||||| |||||| Sbjct 52385 AGGATGTTGTGCTCAGCATGGAATACAATCATGAAGTTGAAAGTACCAGAAACTCCTAGA 52326 Query 8404 GGCATTCCATCAGAGAA 8420 ||||| |||||||| || Sbjct 52325 GGCATACCATCAGAAAA 52309 >seq25216 Length=8180 Score = 174 bits (192), Expect = 2e-38 Identities = 191/254 (75%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 8260 GATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACC 8319 || || || |||||||| |||||||||||||| || || || ||||| | ||| |||| Sbjct 7003 GAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCATCTACG 7062 Query 8320 CCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAG 8379 ||| ||| || || || |||||||| ||||| ||||| | |||||||| | ||||||| Sbjct 7063 CCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGACTGGAATACAATCATGAAG 7122 Query 8380 TTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGA 8439 || || ||||||||||| ||||||||||| |||||||| || || ||||||| ||| Sbjct 7123 TTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGG 7182 Query 8440 TATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCAT 8499 || | ||||| || || |||||| | || ||||| ||| || | | ||||| Sbjct 7183 TAGATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCTGAATACGCAATAGCAATCCAA 7242 Query 8500 GGTCTCATACCTAA 8513 || | |||||| || Sbjct 7243 GGGCGCATACCAAA 7256 >seq29420 Length=7120 Score = 158 bits (174), Expect = 1e-33 Identities = 254/365 (70%), Gaps = 0/365 (0%) Strand=Plus/Minus Query 8399 CTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGA 8458 |||||||||| |||||||| || || ||||||| ||| || | ||||| | | Sbjct 3776 CTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGTAG 3717 Query 8459 AAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGT 8518 |||||| | || ||| | ||| || ||| ||||| || | |||||| | ||| Sbjct 3716 TAGCAGCCGCAACAGGAACTGAATACGCAACAGCAATCCAAGGGCGCATACCCAGACGGA 3657 Query 8519 ATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAA 8578 | | ||||||| | |||||||||| || | |||| | |||||| || | | Sbjct 3656 AACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGCAAAACAT 3597 Query 8579 CCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGG 8638 | || ||| ||||| || || || ||||| ||||| | | ||||||||||| || | Sbjct 3596 TTAGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCATATTG 3537 Query 8639 GATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGT 8698 |||| ||||| || || ||||| |||| |||| | |||||||||| || |||| Sbjct 3536 GATAAAAGTGCAAACCTATAGCAGCAGAAGTCGGAATAATGTCACCAGAGATAATATTGT 3477 Query 8699 TTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAG 8758 |||| | | | || || | |||||||||||||||||| || ||||| || || |||| Sbjct 3476 TTCCGTGAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGAG 3417 Query 8759 CAGCA 8763 || || Sbjct 3416 CAACA 3412 >seq4835 Length=43218 Score = 86.0 bits (94), Expect = 8e-12 Identities = 78/96 (81%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 8122 TTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAAT 8180 ||||| |||| | ||||| |||||||| ||||| ||||| || ||||||||||| || || Sbjct 9153 TTGTTGAAACTA-GCATATTGGAAGATGAATCTGCCAAAATAACCATGAGCAGCTACGAT 9095 Query 8181 ATTATAGGTCTCTTCTTCTTGACCAAACTTATAACC 8216 ||| || || || || ||||||||||| | ||||| Sbjct 9094 ATTCTAAGTTTCCTCCTCTTGACCAAATCTGTAACC 9059 >seq8630 Length=23577 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/97 (81%), Gaps = 3/97 (3%) Strand=Plus/Minus Query 8122 TTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGC-AACAA 8179 ||||| |||| | ||||| |||||||| |||| |||||| || ||||||||||| || | Sbjct 7592 TTGTTGAAACTA-GCATATTGGAAGATGAATCGACCAAAATAACCATGAGCAGCGTACGA 7534 Query 8180 TATTATAGGTCTCTTCTTCTTGACCAAACTTATAACC 8216 |||| || || || || ||||||||||| || ||||| Sbjct 7533 TATTCTAAGTTTCCTCCTCTTGACCAAATTTGTAACC 7497 >seq13559 Length=16232 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 8158 AAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCA 8217 || || ||||||||||| || ||||| || || | || ||||||||||| || ||||| Sbjct 5529 AAATAACCATGAGCAGCTACGATATTCTAAGTTTTCTCCTCTTGACCAAATTTGTAACCT 5588 Query 8218 TAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCG 8277 | || | | || | ||| | || || ||||| | ||| || || |||||||| Sbjct 5589 TCATTAGCATATTCATTTTCTATGGTTTCCCTGATCAAGCTAGAGGTTACCAAAGAACCA 5648 Query 8278 TGCATAGCACTGAAGAGTGATCC 8300 |||||||||||||| || || || Sbjct 5649 TGCATAGCACTGAATAGGGAGCC 5671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612878592861680