Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq5412 342 6e-89 seq8546 241 1e-58 seq29420 190 2e-43 seq25216 150 2e-31 seq59 143 3e-29 seq3927 113 5e-20 seq8630 105 7e-18 seq4835 87.8 2e-12 >seq5412 Length=31808 Score = 342 bits (378), Expect = 6e-89 Identities = 485/680 (71%), Gaps = 8/680 (1%) Strand=Plus/Minus Query 165827 TGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCT 165885 |||||||||| || | ||| | ||||| ||| | || || | |||||||| |||||| Sbjct 15271 TGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCCTTCATTGCTGCT 15213 Query 165886 CCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAAC 165945 || || || || || || || || |||||||| || ||| ||||| | || || ||| Sbjct 15212 CCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTTCTTTACGGAAAC 15153 Query 165946 AACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCC 166005 || || ||||||||||| || ||| ||| || || ||| | ||||| ||||| Sbjct 15152 AATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTGCACTTTTATCCA 15093 Query 166006 ATCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTT 166065 || |||||||| ||||| |||| |||||| | || || |||||||| | | || || Sbjct 15092 ATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCATATGAGCTAATT 15033 Query 166066 GTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTAC 166125 || || |||||| | |||| | | ||||||||||||||||||||||| || | Sbjct 15032 GTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTC 14973 Query 166126 CGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGT 166185 ||||| |||||||| || ||||| |||||| || ||||| || || || |||| | | Sbjct 14972 CGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTTGCGACTGCTACT 14913 Query 166186 GCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGA 166245 || || ||| | | || || | ||| |||| || || ||| ||| ||||| || ||| Sbjct 14912 GCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGTATGCCTCTAGGA 14853 Query 166246 ATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCAT 166305 || || || || ||||||| |||| | || ||||| ||||||||||| || || ||||| Sbjct 14852 ATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 14793 Query 166306 CCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCAC 166365 || || || ||| | ||||| ||||| ||||| | ||| | || || ||| Sbjct 14792 CCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTCAG------GCAT 14739 Query 166366 GGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTAC 166425 || |||||| || || | | | || || || || |||| ||||| || | Sbjct 14738 GGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 14679 Query 166426 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTC 166485 ||||||| | | || ||||| ||||| || || || |||||||| ||||||||||| || Sbjct 14678 GGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCTCATGGTTATTTT 14619 Query 166486 GGTCGTTTGATCTTCCAATA 166505 || || || ||||||||||| Sbjct 14618 GGCCGATTAATCTTCCAATA 14599 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 166619 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATG 166678 |||| |||||||| || | ||||| |||| |||||||| | || || ||||| ||| Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537 Query 166679 TTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 166738 || |||||||| || || |||||||||||||||||||| ||||| || | ||||||| Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477 Query 166739 CCCTCGACCTCGCTGC 166754 | |||||||| || || Sbjct 14476 CTCTCGACCTAGCAGC 14461 >seq8546 Length=31398 Score = 241 bits (266), Expect = 1e-58 Identities = 320/444 (72%), Gaps = 4/444 (1%) Strand=Plus/Minus Query 166312 CATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGT 166371 || ||| | ||||| ||||| ||||| || ||| | || |||| |||||| || | Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 166372 TTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTAC 166431 ||||| || ||| | | | || || || || |||| ||||| || | |||||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 166432 AAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGT 166491 | || || ||||| || ||||| | || || ||||| ||||||||||| || || || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 166492 TTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCA 166551 || ||||||||||| ||| |||||| | || | || || || |||||| | | ||| Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965 Query 166552 TGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTG 166611 |||||||| || || || ||||| || | | || | || |||||||| | ||| Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905 Query 166612 AACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGG 166671 ||||| ||||| |||||||| || | ||||| |||| |||||||| || ||| Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT----AATTATTGG 12849 Query 166672 GCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACGCACAC 166731 || ||| || ||||||||||| || |||||||||||||||||||| ||||| || || Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 12789 Query 166732 AACTTCCCCCTCGACCTCGCTGCT 166755 ||||||| || ||||| |||||| Sbjct 12788 AACTTCCATCTAGACCTAGCTGCT 12765 >seq29420 Length=7120 Score = 190 bits (210), Expect = 2e-43 Identities = 258/360 (72%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 165882 TGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGG 165941 |||||| || || || || || || || |||||||| || |||| ||||| | | || Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474 Query 165942 TAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTA 166001 ||||| || |||||||||| || |||| |||| || || ||| | ||||| || Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534 Query 166002 TCCCATCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACT 166061 ||| || |||||||| ||||| |||| |||||| | || || |||||||||| | || Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594 Query 166062 GGTTGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTC 166121 ||| || |||||| | |||| | | ||||||||||||||||||||||| Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654 Query 166122 TTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGC 166181 || |||||| |||||||| || ||||| |||||| || |||| || || || ||||| Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714 Query 166182 GAGTGCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACT 166241 | | | | ||| | | || || | |||||||| || || ||||||| ||||| || Sbjct 3715 TACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774 >seq25216 Length=8180 Score = 150 bits (166), Expect = 2e-31 Identities = 184/251 (73%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 166132 GGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTA 166191 |||||||| || ||||| | |||| || ||||| || || || ||||| | ||| || Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194 Query 166192 TTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCA 166251 ||| | | || || | |||||||| || || ||||||| ||||| || ||||| || Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134 Query 166252 GGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTC 166311 || || ||||||| |||| | || ||||| |||||||||| || || ||||| || || Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074 Query 166312 CATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGT 166371 || ||| | ||||| | ||| ||||| || ||| | || ||||||||||| || | Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCT 7014 Query 166372 TTGGTTACTTC 166382 ||||| || || Sbjct 7013 TTGGTAACCTC 7003 >seq59 Length=339703 Score = 143 bits (158), Expect = 3e-29 Identities = 187/259 (72%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 166222 TTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAA 166281 || ||||||| ||||| || ||| | || || || ||||||| |||| | || ||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 166282 GCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGT 166341 ||||||||||| || || ||||| || || || ||| | |||| ||||| ||||| || Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 166342 GGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACG 166401 ||| | || |||| |||||| || |||||| || || | | |||| || || Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 166402 ACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAAC 166461 || |||| ||||| || | ||||||| ||| || ||||| ||||| || || || Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 166462 ATCGTAGCCGCTCATGGTT 166480 || ||||| ||||||||| Sbjct 52549 ATTGTAGCTACTCATGGTT 52567 >seq3927 Length=49767 Score = 113 bits (124), Expect = 5e-20 Identities = 179/253 (71%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 167302 TGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTT 167361 ||| ||||||| || ||||| || || |||| || || ||||| ||| | || || ||| Sbjct 26007 TGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATTT 26066 Query 167362 GAACTTGCTCG-CCTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTAT 167420 ||||||||||| ||| || | || || || ||||| || || || | |||||| || Sbjct 26067 GAACTTGCTCGATCTG-TTCAATTGCGACCTTATAATGCAATAGCATTATTTGGTCCAAT 26125 Query 167421 TGCTGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGC 167480 ||| | || ||| || || || | ||||| || ||||| | ||||||||||| Sbjct 26126 TGCCATTTTTGTTTCGGTGTTTCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGC 26185 Query 167481 CCCGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAA 167540 || || || || || | || || |||||| ||||||| | ||||| || || || Sbjct 26186 GCCTAGTTTTGGTGTAGCATCTATATT-CGATTCATCCTCTTTTTTCAAGGGTTTCATAA 26244 Query 167541 CTGGACACTGAAT 167553 |||||| ||||| Sbjct 26245 TTGGACATTGAAT 26257 >seq8630 Length=23577 Score = 105 bits (116), Expect = 7e-18 Identities = 104/133 (78%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 166426 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTA-GCCGCTCATGGTTACTT 166484 |||||||| || || ||||| || ||||| || || |||||| || ||||||||||| || Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 166485 CGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCT 166544 ||||| || ||||||||||| ||| |||||||| || || || || || ||||| | Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616 Query 166545 TGCTGCATGGCCT 166557 || || |||||| Sbjct 7617 AGCCGCTTGGCCT 7629 >seq4835 Length=43218 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 166426 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTC 166485 ||||||| || || ||||| || ||||| || || |||||||| ||||||||||| || Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118 Query 166486 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTC----CTTGCACTTCTT 166541 || | || ||||||||||| ||| |||||||| || || || || || ||||| Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAATTACATTTCTT 9178 Query 166542 CCTTGCTGCATGGCCT 166557 | || || |||||| Sbjct 9179 ATTAGCCGCTTGGCCT 9194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558528795533600