Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_020859.1
Length=175430
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 342 6e-89
seq8546 241 1e-58
seq29420 190 2e-43
seq25216 150 2e-31
seq59 143 3e-29
seq3927 113 5e-20
seq8630 105 7e-18
seq4835 87.8 2e-12
>seq5412
Length=31808
Score = 342 bits (378), Expect = 6e-89
Identities = 485/680 (71%), Gaps = 8/680 (1%)
Strand=Plus/Minus
Query 165827 TGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCT 165885
|||||||||| || | ||| | ||||| ||| | || || | |||||||| ||||||
Sbjct 15271 TGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCCTTCATTGCTGCT 15213
Query 165886 CCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAAC 165945
|| || || || || || || || |||||||| || ||| ||||| | || || |||
Sbjct 15212 CCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTTCTTTACGGAAAC 15153
Query 165946 AACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCC 166005
|| || ||||||||||| || ||| ||| || || ||| | ||||| |||||
Sbjct 15152 AATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTGCACTTTTATCCA 15093
Query 166006 ATCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTT 166065
|| |||||||| ||||| |||| |||||| | || || |||||||| | | || ||
Sbjct 15092 ATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCATATGAGCTAATT 15033
Query 166066 GTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTAC 166125
|| || |||||| | |||| | | ||||||||||||||||||||||| || |
Sbjct 15032 GTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTC 14973
Query 166126 CGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGT 166185
||||| |||||||| || ||||| |||||| || ||||| || || || |||| | |
Sbjct 14972 CGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTTGCGACTGCTACT 14913
Query 166186 GCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGA 166245
|| || ||| | | || || | ||| |||| || || ||| ||| ||||| || |||
Sbjct 14912 GCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGTATGCCTCTAGGA 14853
Query 166246 ATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCAT 166305
|| || || || ||||||| |||| | || ||||| ||||||||||| || || |||||
Sbjct 14852 ATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 14793
Query 166306 CCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCAC 166365
|| || || ||| | ||||| ||||| ||||| | ||| | || || |||
Sbjct 14792 CCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTCAG------GCAT 14739
Query 166366 GGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTAC 166425
|| |||||| || || | | | || || || || |||| ||||| || |
Sbjct 14738 GGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 14679
Query 166426 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTC 166485
||||||| | | || ||||| ||||| || || || |||||||| ||||||||||| ||
Sbjct 14678 GGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCTCATGGTTATTTT 14619
Query 166486 GGTCGTTTGATCTTCCAATA 166505
|| || || |||||||||||
Sbjct 14618 GGCCGATTAATCTTCCAATA 14599
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 166619 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATG 166678
|||| |||||||| || | ||||| |||| |||||||| | || || ||||| |||
Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537
Query 166679 TTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 166738
|| |||||||| || || |||||||||||||||||||| ||||| || | |||||||
Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477
Query 166739 CCCTCGACCTCGCTGC 166754
| |||||||| || ||
Sbjct 14476 CTCTCGACCTAGCAGC 14461
>seq8546
Length=31398
Score = 241 bits (266), Expect = 1e-58
Identities = 320/444 (72%), Gaps = 4/444 (1%)
Strand=Plus/Minus
Query 166312 CATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGT 166371
|| ||| | ||||| ||||| ||||| || ||| | || |||| |||||| || |
Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145
Query 166372 TTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTAC 166431
||||| || ||| | | | || || || || |||| ||||| || | ||||||
Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085
Query 166432 AAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGT 166491
| || || ||||| || ||||| | || || ||||| ||||||||||| || || ||
Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025
Query 166492 TTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCA 166551
|| ||||||||||| ||| |||||| | || | || || || |||||| | | |||
Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965
Query 166552 TGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTG 166611
|||||||| || || || ||||| || | | || | || |||||||| | |||
Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905
Query 166612 AACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGG 166671
||||| ||||| |||||||| || | ||||| |||| |||||||| || |||
Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT----AATTATTGG 12849
Query 166672 GCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACGCACAC 166731
|| ||| || ||||||||||| || |||||||||||||||||||| ||||| || ||
Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 12789
Query 166732 AACTTCCCCCTCGACCTCGCTGCT 166755
||||||| || ||||| ||||||
Sbjct 12788 AACTTCCATCTAGACCTAGCTGCT 12765
>seq29420
Length=7120
Score = 190 bits (210), Expect = 2e-43
Identities = 258/360 (72%), Gaps = 0/360 (0%)
Strand=Plus/Plus
Query 165882 TGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGG 165941
|||||| || || || || || || || |||||||| || |||| ||||| | | ||
Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474
Query 165942 TAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTA 166001
||||| || |||||||||| || |||| |||| || || ||| | ||||| ||
Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534
Query 166002 TCCCATCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACT 166061
||| || |||||||| ||||| |||| |||||| | || || |||||||||| | ||
Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594
Query 166062 GGTTGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTC 166121
||| || |||||| | |||| | | |||||||||||||||||||||||
Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654
Query 166122 TTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGC 166181
|| |||||| |||||||| || ||||| |||||| || |||| || || || |||||
Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714
Query 166182 GAGTGCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACT 166241
| | | | ||| | | || || | |||||||| || || ||||||| ||||| ||
Sbjct 3715 TACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774
>seq25216
Length=8180
Score = 150 bits (166), Expect = 2e-31
Identities = 184/251 (73%), Gaps = 0/251 (0%)
Strand=Plus/Minus
Query 166132 GGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTA 166191
|||||||| || ||||| | |||| || ||||| || || || ||||| | ||| ||
Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194
Query 166192 TTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCA 166251
||| | | || || | |||||||| || || ||||||| ||||| || ||||| ||
Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134
Query 166252 GGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTC 166311
|| || ||||||| |||| | || ||||| |||||||||| || || ||||| || ||
Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074
Query 166312 CATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGT 166371
|| ||| | ||||| | ||| ||||| || ||| | || ||||||||||| || |
Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCT 7014
Query 166372 TTGGTTACTTC 166382
||||| || ||
Sbjct 7013 TTGGTAACCTC 7003
>seq59
Length=339703
Score = 143 bits (158), Expect = 3e-29
Identities = 187/259 (72%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 166222 TTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAA 166281
|| ||||||| ||||| || ||| | || || || ||||||| |||| | || |||||
Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368
Query 166282 GCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGT 166341
||||||||||| || || ||||| || || || ||| | |||| ||||| ||||| ||
Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428
Query 166342 GGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACG 166401
||| | || |||| |||||| || |||||| || || | | |||| || ||
Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488
Query 166402 ACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAAC 166461
|| |||| ||||| || | ||||||| ||| || ||||| ||||| || || ||
Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548
Query 166462 ATCGTAGCCGCTCATGGTT 166480
|| ||||| |||||||||
Sbjct 52549 ATTGTAGCTACTCATGGTT 52567
>seq3927
Length=49767
Score = 113 bits (124), Expect = 5e-20
Identities = 179/253 (71%), Gaps = 3/253 (1%)
Strand=Plus/Plus
Query 167302 TGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTT 167361
||| ||||||| || ||||| || || |||| || || ||||| ||| | || || |||
Sbjct 26007 TGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATTT 26066
Query 167362 GAACTTGCTCG-CCTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTAT 167420
||||||||||| ||| || | || || || ||||| || || || | |||||| ||
Sbjct 26067 GAACTTGCTCGATCTG-TTCAATTGCGACCTTATAATGCAATAGCATTATTTGGTCCAAT 26125
Query 167421 TGCTGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGC 167480
||| | || ||| || || || | ||||| || ||||| | |||||||||||
Sbjct 26126 TGCCATTTTTGTTTCGGTGTTTCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGC 26185
Query 167481 CCCGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAA 167540
|| || || || || | || || |||||| ||||||| | ||||| || || ||
Sbjct 26186 GCCTAGTTTTGGTGTAGCATCTATATT-CGATTCATCCTCTTTTTTCAAGGGTTTCATAA 26244
Query 167541 CTGGACACTGAAT 167553
|||||| |||||
Sbjct 26245 TTGGACATTGAAT 26257
>seq8630
Length=23577
Score = 105 bits (116), Expect = 7e-18
Identities = 104/133 (78%), Gaps = 1/133 (1%)
Strand=Plus/Plus
Query 166426 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTA-GCCGCTCATGGTTACTT 166484
|||||||| || || ||||| || ||||| || || |||||| || ||||||||||| ||
Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556
Query 166485 CGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCT 166544
||||| || ||||||||||| ||| |||||||| || || || || || ||||| |
Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616
Query 166545 TGCTGCATGGCCT 166557
|| || ||||||
Sbjct 7617 AGCCGCTTGGCCT 7629
>seq4835
Length=43218
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 4/136 (3%)
Strand=Plus/Plus
Query 166426 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTC 166485
||||||| || || ||||| || ||||| || || |||||||| ||||||||||| ||
Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118
Query 166486 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTC----CTTGCACTTCTT 166541
|| | || ||||||||||| ||| |||||||| || || || || || |||||
Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAATTACATTTCTT 9178
Query 166542 CCTTGCTGCATGGCCT 166557
| || || ||||||
Sbjct 9179 ATTAGCCGCTTGGCCT 9194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 558528795533600
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