Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_020865.1
Length=45730
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 320 5e-83
seq8546 190 6e-44
seq29420 159 1e-34
seq59 149 2e-31
seq8630 123 7e-24
seq4835 104 7e-18
>seq5412
Length=31808
Score = 320 bits (354), Expect = 5e-83
Identities = 488/693 (70%), Gaps = 8/693 (1%)
Strand=Plus/Minus
Query 41280 GGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTACAACTTGTTTTATTATCGCC 41338
|||| || || | |||||||| | ||| ||| |||| ||| | |||||||| |||
Sbjct 15283 GGTTTGGCGTTTTGATGATTCC-TACCTTATTGACCGCAACATCCGTATTTATTATAGCC 15225
Query 41339 TTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTG 41398
|| ||| || || || || || || ||||| || || ||||| || ||| || ||
Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165
Query 41399 TTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTA 41458
| || || ||||| || || || || ||| | ||| || | ||| || || |
Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105
Query 41459 CACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCA 41518
||||| || ||||| ||||||||||| | ||||||||||| | ||||| || ||||||
Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045
Query 41519 TTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGG 41578
| | || | || || |||||| | |||| || | ||||||||| || ||||||
Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985
Query 41579 GAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTC 41638
|||||||| | || || || ||| | || ||||| |||||||||| || || |||||
Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925
Query 41639 GCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCT 41698
|| |||| |||||||| ||| | | || || |||| | || |||||| ||| |
Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865
Query 41699 ATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAAT 41758
||||| | || || || || || ||||||| |||| | || |||||||||||||||||
Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805
Query 41759 ATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTC 41818
|| |||||||| || ||||||||| | || || || || ||||| | || | |||
Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745
Query 41819 TCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTT 41878
| ||| ||| |||| || ||| | || | || || || ||| | |
Sbjct 14744 ------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691
Query 41879 TCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCT 41938
|| || | ||||||| | |||||||||||||||||||||| ||||| || ||||||
Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631
Query 41939 CACGGCTATTTTGGTCGGCTTATCTTCCAATAT 41971
|| || |||||||| || | ||||||||||||
Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598
>seq8546
Length=31398
Score = 190 bits (210), Expect = 6e-44
Identities = 238/326 (73%), Gaps = 4/326 (1%)
Strand=Plus/Minus
Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950
||||||| |||||||||||||| || ||| | |||||||| |||||||| || ||||||
Sbjct 13090 GGTTACAGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTT 13031
Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTT 42010
|| || | ||||||||||||||||| || || |||| | | | | |||||||| |
Sbjct 13030 GGCCGATTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTA 12971
Query 42011 GCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTC 42070
| ||| |||||||| |||||||| |||||| || | | || | ||| ||||| ||
Sbjct 12970 GTTGCTTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTT 12911
Query 42071 AACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAAC 42130
| | | || || ||||| || ||||||||| | | | | | | || | || || |
Sbjct 12910 ATCCTAAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTA-- 12853
Query 42131 ACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAAC 42190
||||| || ||| ||||||| || |||||||| | || || |||||||| || ||
Sbjct 12852 --TTGGGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 12795
Query 42191 GCACACAACTTCCCGCTTGACCTTGC 42216
|| || ||||||| || ||||| ||
Sbjct 12794 GCTCATAACTTCCATCTAGACCTAGC 12769
>seq29420
Length=7120
Score = 159 bits (176), Expect = 1e-34
Identities = 249/356 (70%), Gaps = 0/356 (0%)
Strand=Plus/Plus
Query 41348 GCACCACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGT 41407
|| || || || || || ||||| || || ||||| || |||| || || | | ||
Sbjct 3416 GCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGGA 3475
Query 41408 AACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTAC 41467
||||| || || || || | | | |||||| | ||| || || | ||||| ||
Sbjct 3476 AACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTAT 3535
Query 41468 CCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTC 41527
||||| ||||||||||| | ||||||||||| | ||||| || ||||| | | ||
Sbjct 3536 CCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTA 3595
Query 41528 ACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGC 41587
| || || |||||| | |||| || | ||||||||| || ||||||||||||||
Sbjct 3596 AATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGT 3655
Query 41588 TATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCG 41647
| || || || ||| | || ||||| ||||||||| || | |||||| || |||||
Sbjct 3656 TTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGCT 3715
Query 41648 ACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCC 41703
||| || | ||| | | || || |||| || || |||||||||| ||||||
Sbjct 3716 ACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCC 3771
>seq59
Length=339703
Score = 149 bits (164), Expect = 2e-31
Identities = 187/257 (73%), Gaps = 0/257 (0%)
Strand=Plus/Plus
Query 41687 TTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAG 41746
|||||||||| |||||| | || | || || || ||||||| |||| | || |||||
Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368
Query 41747 GCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGT 41806
||||||||||| || |||||||| || ||||||||| | | || || || ||||| ||
Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428
Query 41807 GGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACG 41866
|| | ||| || |||||| ||| |||| || ||| | ||| | || ||
Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488
Query 41867 ACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAAT 41926
|| ||| | | || || | ||||||| |||||||||||||||||||||||| |||
Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548
Query 41927 ATTGTTGCTGCTCACGG 41943
||||| ||| |||| ||
Sbjct 52549 ATTGTAGCTACTCATGG 52565
>seq8630
Length=23577
Score = 123 bits (136), Expect = 7e-24
Identities = 108/133 (81%), Gaps = 1/133 (1%)
Strand=Plus/Plus
Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTT-GCTGCTCACGGCTATTT 41949
|||||||| |||||||||||||| || ||||| ||||| || |||||||| || |||||
Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556
Query 41950 TGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCT 42009
|||||| | ||||||||||||||||| || || ||||| ||| | | |||||||| |
Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616
Query 42010 TGCTGCCTGGCCT 42022
|| || ||||||
Sbjct 7617 AGCCGCTTGGCCT 7629
>seq4835
Length=43218
Score = 104 bits (114), Expect = 7e-18
Identities = 106/138 (77%), Gaps = 8/138 (6%)
Strand=Plus/Plus
Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950
||||||| |||||||||||||| || ||||| ||||| || |||||||| || ||||||
Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118
Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTT------CATTTC 42004
|| | | ||||||||||||||||| || || || || ||| |||| ||||||
Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATCTCGT--TCTTTAATTACATTTC 9176
Query 42005 TTTCTTGCTGCCTGGCCT 42022
|| | || || ||||||
Sbjct 9177 TTATTAGCCGCTTGGCCT 9194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145541422088176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |