Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq5412 351 3e-92 seq8546 210 6e-50 seq29420 178 4e-40 seq25216 159 1e-34 seq59 156 1e-33 seq8630 105 2e-18 seq4835 86.0 2e-12 >seq5412 Length=31808 Score = 351 bits (388), Expect = 3e-92 Identities = 495/693 (71%), Gaps = 8/693 (1%) Strand=Plus/Minus Query 42335 GGTTTGGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGTTTTATTGTCGCT 42393 ||||||| || |||||||||| | || | | | || || || |||||| | || Sbjct 15283 GGTTTGGCGTTTTGATGATTCC-TACCTTATTGACCGCAACATCCGTATTTATTATAGCC 15225 Query 42394 TTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTT 42453 ||||||||||| ||||||||||| |||||||| |||||||||||||| | ||| |||||| Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165 Query 42454 CTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTA 42513 || || || ||||| || |||||||||||| | | | | | || || || | Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105 Query 42514 CATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCT 42573 || || ||| | || |||||||| | |||| |||||| | |||||||| || || Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045 Query 42574 TATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGG 42633 ||| |||| | || || |||||| | | ||| | | |||| |||| || || ||| Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985 Query 42634 GAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTG 42693 |||||| | ||| || || ||| | || ||||| ||||||| || || |||||||| Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925 Query 42694 GCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGA 42753 || | || ||||| || ||| | |||| ||| |||| |||| ||||| |||| Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865 Query 42754 ATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAAC 42813 |||||||| || ||||| ||||| |||||||||||| | || ||||||||||| || ||| Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805 Query 42814 ATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTC 42873 || |||||||| || || || ||| | || || || || ||||| | || | | ||| Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745 Query 42874 TCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAA 42933 | ||||||| | | || ||||| | | | | ||||| || ||||| ||| Sbjct 14744 ------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691 Query 42934 AGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCG 42993 ||| | || |||| | | ||||||||||| ||||||||||| || || || || Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631 Query 42994 CATGGTTACTTTGGACGGCTTATCTTCCAATAT 43026 |||||||| ||||| || | |||||||||||| Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598 Score = 86.0 bits (94), Expect = 2e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 43141 AACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATT 43200 || || |||||||| | ||||||| ||| || ||| || |||||||||||||||| Sbjct 14594 AATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATT 14535 Query 43201 TTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCG 43260 | || || | |||||||| | || || ||||| || || ||||| | ||||||||| Sbjct 14534 ATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCCCT 14475 Query 43261 CTTGATCTTGCA 43272 || || || ||| Sbjct 14474 CTCGACCTAGCA 14463 >seq8546 Length=31398 Score = 210 bits (232), Expect = 6e-50 Identities = 314/441 (71%), Gaps = 6/441 (1%) Strand=Plus/Minus Query 42832 CATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGT 42891 || ||| | || || || || ||||| || || || | ||| | |||||||||| | Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 42892 CTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTAC 42951 | || |||||| | | | | ||||| || ||||| || | ||| | || ||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 42952 AAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGG 43011 | || |||||||||||||| ||| | || ||||| || || |||||||| ||||| || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 43012 CTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGC 43070 | |||||||||||||| | |||| || || || ||||| || ||||| | | || Sbjct 13024 TTCATCTTCCAATATGC-TAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGC 12966 Query 43071 TTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTT 43130 |||||| || || || || ||||| ||| || | || | ||||||||||| |||| | | Sbjct 12965 TTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCT 12906 Query 43131 GAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTG 43190 || || || || || |||||||| | ||||||| ||| || ||| || || ||| Sbjct 12905 AAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAAT---TA-TTG 12850 Query 43191 GGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACA 43250 ||| |||||| | || || || |||||||| | || || ||||| || || ||||| || Sbjct 12849 GGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 12790 Query 43251 TAACTTCCCGCTTGATCTTGC 43271 |||||||| || || || || Sbjct 12789 TAACTTCCATCTAGACCTAGC 12769 >seq29420 Length=7120 Score = 178 bits (196), Expect = 4e-40 Identities = 257/363 (71%), Gaps = 0/363 (0%) Strand=Plus/Plus Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 || ||| ||||||||||| |||||||| |||||||||||||| ||||| |||||||| | Sbjct 3412 TGTTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCA 3471 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || ||||| || |||||||||| | | | || | | || || || | || || Sbjct 3472 CGGAAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTT 3531 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 ||| | || |||||||| | |||| |||||| | |||||||| || |||||| | Sbjct 3532 TTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGA 3591 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 ||| || || |||||| | | ||| | | |||| |||| || || |||||||| Sbjct 3592 GCTAAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACT 3651 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | | ||| || || ||| | || ||||| |||||| || || | ||||| || || Sbjct 3652 TAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGC 3711 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 || ||| | | ||| | |||| ||| |||| ||||| ||||| ||||| ||||| Sbjct 3712 TGCTACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCC 3771 Query 42759 TCT 42761 ||| Sbjct 3772 TCT 3774 >seq25216 Length=8180 Score = 159 bits (176), Expect = 1e-34 Identities = 187/253 (74%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 42650 TTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAG 42709 |||| ||| | || ||||| | |||| || || || ||||| || || || ||||| | Sbjct 7255 TTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTG 7196 Query 42710 TCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTT 42769 | ||| | |||| ||| |||| ||||| ||||| ||||| |||||||| || |||| Sbjct 7195 TTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTT 7136 Query 42770 CCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTT 42829 | ||||| |||||||||||| | || |||||| |||| || ||||| |||||||| || | Sbjct 7135 CTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCAT 7076 Query 42830 TCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTA 42889 | || ||| | || || | || ||||| || || || | ||| |||||||||||| Sbjct 7075 TTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTT 7016 Query 42890 GTCTTGTCACCTC 42902 | | || ||||| Sbjct 7015 CTTTGGTAACCTC 7003 >seq59 Length=339703 Score = 156 bits (172), Expect = 1e-33 Identities = 190/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 42742 TTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAG 42801 ||||| ||||| |||||||| || |||| ||||| |||||||||||| | || ||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 42802 GCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGT 42861 ||||| || ||||| |||||||| || || || ||| | | || || || ||||| || Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 42862 GGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACG 42921 || || | ||| | |||||||||| | | || ||||| | | | | ||||| Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 42922 ACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAAC 42981 || ||||| ||| ||| | || |||| ||| ||||||||||| ||||||||||| Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 42982 ATTGTTGCAGCGCATGGTT 43000 ||||| || | ||||||| Sbjct 52549 ATTGTAGCTACTCATGGTT 52567 >seq8630 Length=23577 Score = 105 bits (116), Expect = 2e-18 Identities = 109/139 (78%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 42940 AATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTT-GCAGCGCATGG 42998 ||| | || ||||| || |||||||||||||| ||||| || || || || || ||||| Sbjct 7491 AATGAAGGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGG 7550 Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACT 43057 ||| ||||| || | |||||||||||||| | |||| || ||| ||| ||||| || | Sbjct 7551 TTATTTTGGTCGATTCATCTTCCAATATGC-TAGTTTCAACAATTCTCGTTCTTTACATT 7609 Query 43058 TCTTTCTTGCCGCTTGGCC 43076 |||| | ||||||||||| Sbjct 7610 TCTTATTAGCCGCTTGGCC 7628 >seq4835 Length=43218 Score = 86.0 bits (94), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 6/142 (4%) Strand=Plus/Plus Query 42940 AATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGT 42999 ||| | || |||| || |||||||||||||| ||||| || || || || || |||||| Sbjct 9053 AATGAAGGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGT 9112 Query 43000 TACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCT----TTGC 43054 || ||||| | | |||||||||||||| | |||| || || ||| ||| || | Sbjct 9113 TATTTTGGCAGATTCATCTTCCAATATGC-TAGTTTCAACAAATCTCGTTCTTTAATTAC 9171 Query 43055 ACTTCTTTCTTGCCGCTTGGCC 43076 | ||||| | ||||||||||| Sbjct 9172 ATTTCTTATTAGCCGCTTGGCC 9193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142872164631512