Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_020874.1
Length=46198
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 241 4e-59
seq8546 170 6e-38
seq59 134 4e-27
seq25216 123 7e-24
seq29420 111 5e-20
>seq5412
Length=31808
Score = 241 bits (266), Expect = 4e-59
Identities = 440/645 (68%), Gaps = 6/645 (1%)
Strand=Plus/Plus
Query 26122 ATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTC 26181
||| || || ||||||| ||||| || || || ||||| || |||||||| ||||||||
Sbjct 14598 ATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTCTCTTC 14657
Query 26182 ATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAG 26241
||||| |||| | | || || | ||| || | | ||||| ||||| || |
Sbjct 14658 CTCTTGACCAAGCCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 14717
Query 26242 TGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGC 26301
|| || |||||| || ||| | ||| || || |||| || |||||
Sbjct 14718 ACTCGAGGTTACCAAAGAACCATGCCT------GAATAGGTAGCCGTCGAATACACCAGC 14771
Query 26302 AACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACAT 26361
|| || ||| || ||||||||||| || || || || || || |||||||| | |||
Sbjct 14772 TACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCAT 14831
Query 26362 AAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAA 26421
||||| ||||||||||| || || |||||||| |||| | ||| || |||| || |
Sbjct 14832 GAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATTAGAAAAGCTTCCTTAACCAAT 14891
Query 26422 AGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATAT 26481
|| || | ||||| || || ||| | | | || |||| ||| ||||||| ||
Sbjct 14892 TGGGTAGATCAAGAAAACAGCAGTAGCAGTCGCAACAGGGGCTGAATACGCAACAACAAT 14951
Query 26482 CCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCTGCTAC 26541
||| || | ||| || || | | || |||||||||| | || || |||||
Sbjct 14952 CCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTAC 15011
Query 26542 TCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTC 26601
|| | ||||||||| || | ||| || | |||||| || |||||||||| ||| || ||
Sbjct 15012 ACCAAGTAAGAAGTGAAAAACAATTAGCTCATATGGACCACCATTGTATAACCATTCATC 15071
Query 26602 CAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGAC 26661
| | |||||||||| || || ||||| || | || || || | | | | |
Sbjct 15072 AACAGATGCAGCTTCCCATATTGGATAAAAGTGCAAACCTATAGCAGCAAAAGTCTGAAT 15131
Query 26662 GACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTAT 26721
| || || || || |||||||||||||| | | || || |||| || ||||| ||
Sbjct 15132 AATGGCACCAGAGATAATATTGTTTCCGTAAAGAAGAGATCCAAAAACAGGTTCACGAAT 15191
Query 26722 GCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA 26766
||||| |||||||| || || || || |||||||| | |||||
Sbjct 15192 ACCATCAATATCTACCGGAGGAGCAGCAATGAAGGCTATAATAAA 15236
Score = 82.4 bits (90), Expect = 2e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 25873 TGATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAG 25932
|| ||||| ||| || || |||||| |||||||||| || ||||||||||| | || ||
Sbjct 14460 TGCTGCTAGGTCGAGAGGGAAGTTAGGAGCATTACGTTCATGCATAACTTCCATACCAAG 14519
Query 25933 GTTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTAC 25992
||||| ||||| | | ||||||||| ||| |||| || | | ||| |||||
Sbjct 14520 GTTAGTGCGGTTAATAATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTAC 14579
Query 25993 TGACTGGTTAAAGTT 26007
|| ||||| || ||
Sbjct 14580 AGATTGGTTGAAATT 14594
>seq8546
Length=31398
Score = 170 bits (188), Expect = 6e-38
Identities = 229/317 (72%), Gaps = 4/317 (1%)
Strand=Plus/Plus
Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936
|||| ||| || | ||||||||||||||||| || ||||||||||| | || ||||||
Sbjct 12769 GCTAGGTCTAGATGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 12828
Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996
|| ||||| | | ||| ||||| || |||| || | | ||| ||||| ||
Sbjct 12829 GCGCGGTTAATAATATCGGCCCA-ATA---ATTACACGACCTTGACTATCAACTACAGAT 12884
Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056
||||| || || || || |||||| |||||||||| || | ||||| | || || | |
Sbjct 12885 TGGTTGAAATTGAAGCCGTTTAGGATAAATGCCATAGTACTAATACCTAAAGTAGTAAAC 12944
Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116
||||| || || || ||||||| | | | |||||||| | |||| | | || |||
Sbjct 12945 CATATACCTACTACAGGCCAAGCAACTAAGAAGAAATGTAAAGAATGAGAATCGTTGAAA 13004
Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176
|| ||||| || || || |||| ||||| || || || ||||| |||||||| | ||
Sbjct 13005 CTAGCATATTGGAAGATGAATCGGCCAAAATAACCATGAGCAGCTACAATATTCTTAGTT 13064
Query 26177 TCTTCATCTTGCCCAAA 26193
|| || ||||| |||||
Sbjct 13065 TCCTCCTCTTGACCAAA 13081
>seq59
Length=339703
Score = 134 bits (148), Expect = 4e-27
Identities = 181/252 (72%), Gaps = 0/252 (0%)
Strand=Plus/Minus
Query 26150 CCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTC 26209
|| || | ||| ||||||||||| |||||||| ||||| |||||| | || || | |||
Sbjct 52565 CCATGAGTAGCTACAATATTATAAGTCTCTTCCTCTTGACCAAACCTGTAACCTTCATTA 52506
Query 26210 TGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATA 26269
|| | | ||||| ||||| ||| | || || |||||| || ||||||
Sbjct 52505 GTAGATTCATTTTCTGTGGTTTCCCTAATCAAACTCGAGGTTACCAAAGAACCATGCATA 52446
Query 26270 GCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATG 26329
|| ||| || | || ||||| || ||||| || | ||| || |||||||||||
Sbjct 52445 ACACTGAATAGGGAGCCGCCGAATACACCAGCTACGCTTAACATGTGAAATGGGTGCATA 52386
Query 26330 AGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGA 26389
|| || || || || || |||||||| | ||| ||||| ||||||||||| | || |||
Sbjct 52385 AGGATGTTGTGCTCAGCATGGAATACAATCATGAAGTTGAAAGTACCAGAAACTCCTAGA 52326
Query 26390 GGCATTCCATCA 26401
||||| ||||||
Sbjct 52325 GGCATACCATCA 52314
>seq25216
Length=8180
Score = 123 bits (136), Expect = 7e-24
Identities = 178/251 (71%), Gaps = 0/251 (0%)
Strand=Plus/Plus
Query 26246 GAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACA 26305
|| || |||||| || ||||||||| ||| || | || ||||| || ||| | ||
Sbjct 7003 GAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCATCTACG 7062
Query 26306 CCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAG 26365
|| ||| || ||||||||||| || || || || || | |||||||| | ||| |||
Sbjct 7063 CCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGACTGGAATACAATCATGAAG 7122
Query 26366 TTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGA 26425
|| ||||||||||| || || |||||||| |||||| ||| || ||||| || | ||
Sbjct 7123 TTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGG 7182
Query 26426 TAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCAT 26485
|| | ||||| || || ||| || | | || |||| ||| |||| | |||||
Sbjct 7183 TAGATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCTGAATACGCAATAGCAATCCAA 7242
Query 26486 GGTCTCATTCC 26496
|| | ||| ||
Sbjct 7243 GGGCGCATACC 7253
>seq29420
Length=7120
Score = 111 bits (122), Expect = 5e-20
Identities = 240/359 (67%), Gaps = 0/359 (0%)
Strand=Plus/Minus
Query 26387 AGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGA 26446
|||||||| |||||| ||| || ||||| || | || || | ||||| | | |
Sbjct 3774 AGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGTAGTA 3715
Query 26447 GCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAA 26506
|| || | | || ||| ||| |||||| ||||| || | ||| || || | | ||
Sbjct 3714 GCAGCCGCAACAGGAACTGAATACGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 3655
Query 26507 GATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATG 26566
|||||||||| | || || ||||| || | ||||||||| || | | |
Sbjct 3654 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGCAAAACATTT 3595
Query 26567 AGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGG 26626
|| | ||| || || |||||||||| ||| || || | | |||||||||| || ||
Sbjct 3594 AGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCATATTGGA 3535
Query 26627 TAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTT 26686
||||| || | || || || ||| | || | | | || || || |||||||||
Sbjct 3534 TAAAAGTGCAAACCTATAGCAGCAGAAGTCGGAATAATGTCACCAGAGATAATATTGTTT 3475
Query 26687 CCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGC 26745
|||| | | || || ||||| || ||||| || ||||| |||||||| || || ||
Sbjct 3474 CCGTGAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGAGC 3416
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 147032129116480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |