Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq5412 241 4e-59 seq8546 170 6e-38 seq59 134 4e-27 seq25216 123 7e-24 seq29420 111 5e-20 >seq5412 Length=31808 Score = 241 bits (266), Expect = 4e-59 Identities = 440/645 (68%), Gaps = 6/645 (1%) Strand=Plus/Plus Query 26122 ATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTC 26181 ||| || || ||||||| ||||| || || || ||||| || |||||||| |||||||| Sbjct 14598 ATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTCTCTTC 14657 Query 26182 ATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAG 26241 ||||| |||| | | || || | ||| || | | ||||| ||||| || | Sbjct 14658 CTCTTGACCAAGCCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 14717 Query 26242 TGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGC 26301 || || |||||| || ||| | ||| || || |||| || ||||| Sbjct 14718 ACTCGAGGTTACCAAAGAACCATGCCT------GAATAGGTAGCCGTCGAATACACCAGC 14771 Query 26302 AACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACAT 26361 || || ||| || ||||||||||| || || || || || || |||||||| | ||| Sbjct 14772 TACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCAT 14831 Query 26362 AAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAA 26421 ||||| ||||||||||| || || |||||||| |||| | ||| || |||| || | Sbjct 14832 GAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATTAGAAAAGCTTCCTTAACCAAT 14891 Query 26422 AGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATAT 26481 || || | ||||| || || ||| | | | || |||| ||| ||||||| || Sbjct 14892 TGGGTAGATCAAGAAAACAGCAGTAGCAGTCGCAACAGGGGCTGAATACGCAACAACAAT 14951 Query 26482 CCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCTGCTAC 26541 ||| || | ||| || || | | || |||||||||| | || || ||||| Sbjct 14952 CCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTAC 15011 Query 26542 TCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTC 26601 || | ||||||||| || | ||| || | |||||| || |||||||||| ||| || || Sbjct 15012 ACCAAGTAAGAAGTGAAAAACAATTAGCTCATATGGACCACCATTGTATAACCATTCATC 15071 Query 26602 CAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGAC 26661 | | |||||||||| || || ||||| || | || || || | | | | | Sbjct 15072 AACAGATGCAGCTTCCCATATTGGATAAAAGTGCAAACCTATAGCAGCAAAAGTCTGAAT 15131 Query 26662 GACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTAT 26721 | || || || || |||||||||||||| | | || || |||| || ||||| || Sbjct 15132 AATGGCACCAGAGATAATATTGTTTCCGTAAAGAAGAGATCCAAAAACAGGTTCACGAAT 15191 Query 26722 GCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA 26766 ||||| |||||||| || || || || |||||||| | ||||| Sbjct 15192 ACCATCAATATCTACCGGAGGAGCAGCAATGAAGGCTATAATAAA 15236 Score = 82.4 bits (90), Expect = 2e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 25873 TGATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAG 25932 || ||||| ||| || || |||||| |||||||||| || ||||||||||| | || || Sbjct 14460 TGCTGCTAGGTCGAGAGGGAAGTTAGGAGCATTACGTTCATGCATAACTTCCATACCAAG 14519 Query 25933 GTTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTAC 25992 ||||| ||||| | | ||||||||| ||| |||| || | | ||| ||||| Sbjct 14520 GTTAGTGCGGTTAATAATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTAC 14579 Query 25993 TGACTGGTTAAAGTT 26007 || ||||| || || Sbjct 14580 AGATTGGTTGAAATT 14594 >seq8546 Length=31398 Score = 170 bits (188), Expect = 6e-38 Identities = 229/317 (72%), Gaps = 4/317 (1%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || | ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 12769 GCTAGGTCTAGATGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 12828 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||| ||||| || |||| || | | ||| ||||| || Sbjct 12829 GCGCGGTTAATAATATCGGCCCA-ATA---ATTACACGACCTTGACTATCAACTACAGAT 12884 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || || || |||||| |||||||||| || | ||||| | || || | | Sbjct 12885 TGGTTGAAATTGAAGCCGTTTAGGATAAATGCCATAGTACTAATACCTAAAGTAGTAAAC 12944 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 ||||| || || || ||||||| | | | |||||||| | |||| | | || ||| Sbjct 12945 CATATACCTACTACAGGCCAAGCAACTAAGAAGAAATGTAAAGAATGAGAATCGTTGAAA 13004 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || || || ||||| |||||||| | || Sbjct 13005 CTAGCATATTGGAAGATGAATCGGCCAAAATAACCATGAGCAGCTACAATATTCTTAGTT 13064 Query 26177 TCTTCATCTTGCCCAAA 26193 || || ||||| ||||| Sbjct 13065 TCCTCCTCTTGACCAAA 13081 >seq59 Length=339703 Score = 134 bits (148), Expect = 4e-27 Identities = 181/252 (72%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 26150 CCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTC 26209 || || | ||| ||||||||||| |||||||| ||||| |||||| | || || | ||| Sbjct 52565 CCATGAGTAGCTACAATATTATAAGTCTCTTCCTCTTGACCAAACCTGTAACCTTCATTA 52506 Query 26210 TGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATA 26269 || | | ||||| ||||| ||| | || || |||||| || |||||| Sbjct 52505 GTAGATTCATTTTCTGTGGTTTCCCTAATCAAACTCGAGGTTACCAAAGAACCATGCATA 52446 Query 26270 GCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATG 26329 || ||| || | || ||||| || ||||| || | ||| || ||||||||||| Sbjct 52445 ACACTGAATAGGGAGCCGCCGAATACACCAGCTACGCTTAACATGTGAAATGGGTGCATA 52386 Query 26330 AGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGA 26389 || || || || || || |||||||| | ||| ||||| ||||||||||| | || ||| Sbjct 52385 AGGATGTTGTGCTCAGCATGGAATACAATCATGAAGTTGAAAGTACCAGAAACTCCTAGA 52326 Query 26390 GGCATTCCATCA 26401 ||||| |||||| Sbjct 52325 GGCATACCATCA 52314 >seq25216 Length=8180 Score = 123 bits (136), Expect = 7e-24 Identities = 178/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 26246 GAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACA 26305 || || |||||| || ||||||||| ||| || | || ||||| || ||| | || Sbjct 7003 GAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCATCTACG 7062 Query 26306 CCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAG 26365 || ||| || ||||||||||| || || || || || | |||||||| | ||| ||| Sbjct 7063 CCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGACTGGAATACAATCATGAAG 7122 Query 26366 TTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGA 26425 || ||||||||||| || || |||||||| |||||| ||| || ||||| || | || Sbjct 7123 TTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGG 7182 Query 26426 TAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCAT 26485 || | ||||| || || ||| || | | || |||| ||| |||| | ||||| Sbjct 7183 TAGATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCTGAATACGCAATAGCAATCCAA 7242 Query 26486 GGTCTCATTCC 26496 || | ||| || Sbjct 7243 GGGCGCATACC 7253 >seq29420 Length=7120 Score = 111 bits (122), Expect = 5e-20 Identities = 240/359 (67%), Gaps = 0/359 (0%) Strand=Plus/Minus Query 26387 AGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGA 26446 |||||||| |||||| ||| || ||||| || | || || | ||||| | | | Sbjct 3774 AGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGTAGTA 3715 Query 26447 GCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAA 26506 || || | | || ||| ||| |||||| ||||| || | ||| || || | | || Sbjct 3714 GCAGCCGCAACAGGAACTGAATACGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 3655 Query 26507 GATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATG 26566 |||||||||| | || || ||||| || | ||||||||| || | | | Sbjct 3654 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGCAAAACATTT 3595 Query 26567 AGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGG 26626 || | ||| || || |||||||||| ||| || || | | |||||||||| || || Sbjct 3594 AGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCATATTGGA 3535 Query 26627 TAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTT 26686 ||||| || | || || || ||| | || | | | || || || ||||||||| Sbjct 3534 TAAAAGTGCAAACCTATAGCAGCAGAAGTCGGAATAATGTCACCAGAGATAATATTGTTT 3475 Query 26687 CCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGC 26745 |||| | | || || ||||| || ||||| || ||||| |||||||| || || || Sbjct 3474 CCGTGAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGAGC 3416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147032129116480