Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_020875.1
Length=182801
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 340 2e-88
seq8546 223 4e-53
seq29420 178 2e-39
seq59 170 2e-37
seq25216 159 4e-34
>seq5412
Length=31808
Score = 340 bits (376), Expect = 2e-88
Identities = 462/645 (72%), Gaps = 6/645 (1%)
Strand=Plus/Minus
Query 155062 TTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTC 155121
|| ||| | |||||||||||||| ||||| ||||| |||||||||||||||||||| ||
Sbjct 15236 TTTATTATAGCCTTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 15177
Query 155122 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAAC 155181
||| ||| | | || || ||||| || ||||||||||| || | | | ||
Sbjct 15176 TTTGGATCTCTTCTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCT 15117
Query 155182 GCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTAC 155241
|| || ||| | ||||| ||||| || |||||||| ||| || ||||||| ||||| |||
Sbjct 15116 GCTATAGGTTTGCACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATAC 15057
Query 155242 AATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT 155301
||||||||||| | | || | || || |||||| | | || | | |||
Sbjct 15056 AATGGTGGTCCATATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATG 14997
Query 155302 GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATAC 155361
|||||| ||||||||||| || |||||| || ||||| |||||||| |||||| ||
Sbjct 14996 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTAT 14937
Query 155362 TCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCT 155421
|| || || || | |||| ||||| ||| | | || || | ||| ||||
Sbjct 14936 TCAGCCCCTGTTGCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGC 14877
Query 155422 TTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAA 155481
|| ||| ||| |||||||| || || ||||||||||| |||| ||| | || |||||
Sbjct 14876 TTTTCTAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 14817
Query 155482 GCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGT 155541
|| || ||||| |||||||||||||| || |||||| | || ||||| ||||| ||||
Sbjct 14816 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGAC 14757
Query 155542 GGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACT 155601
|| | || ||| | ||| ||||| ||||| || || | ||| | |||||
Sbjct 14756 GGCTACCTATTC------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACC 14703
Query 155602 ACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAAC 155661
|| || | || ||| || | ||||||| | | || ||||| ||||| ||||||||
Sbjct 14702 ACAGAAAATGAATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAAT 14643
Query 155662 ATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTAT 155706
|| || ||||||||||| || || || || | |||||||| |||
Sbjct 14642 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598
Score = 98.7 bits (108), Expect = 1e-15
Identities = 106/139 (76%), Gaps = 6/139 (4%)
Strand=Plus/Minus
Query 155819 TCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAG 155875
|||| |||||||| |||||||| || |||| ||| || || ||| ||||| |
Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGA---TAGTCAAGGTCGTGTAATTAATACTTGGGCTG 14540
Query 155876 ACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACT 155935
| ||| |||||||| || |||||||||||||| ||||| || ||||| |||| ||||
Sbjct 14539 ATATTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACT 14480
Query 155936 TCCCTCTTGACCTTGCTGC 155954
||||||| ||||| || ||
Sbjct 14479 TCCCTCTCGACCTAGCAGC 14461
>seq8546
Length=31398
Score = 223 bits (246), Expect = 4e-53
Identities = 322/449 (72%), Gaps = 14/449 (3%)
Strand=Plus/Minus
Query 155512 CACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCA 155571
|||||| | || ||||| ||||| ||||| || || | ||| || |||||| |||||
Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145
Query 155572 TTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTAC 155631
||||| || ||| | ||| | ||||| || || | | || || | ||||||
Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085
Query 155632 AAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGT 155691
| || || ||||| || |||||| | || ||||| ||||||||||| || || || ||
Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025
Query 155692 CTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTT--CACTTCTTCCTTGCTG 155749
| |||||||| ||||| |||||| | || | |||| || |||||| | | ||
Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTC--TCATTCTTTACATTTCTTCTTAGTTG 12967
Query 155750 CATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACC 155809
| |||||||| || | || ||| ||| || | ||| | || |||||||| | ||
Sbjct 12966 CTTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCC 12907
Query 155810 TTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTA 155866
| ||||| ||||| |||||||| |||||||| || |||| ||| || || ||
Sbjct 12906 TAAACGGCTTCAATTTCAACCAATCTGTAGTTGA---TAGTCAAGGTCGTGTAAT---TA 12853
Query 155867 CATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACG 155926
||||| || ||| ||||||||||| |||||||||||||| ||||| || ||||| |
Sbjct 12852 -TTGGGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 12794
Query 155927 CTCACAACTTCCCTCTTGACCTTGCTGCT 155955
|||| ||||||| ||| ||||| ||||||
Sbjct 12793 CTCATAACTTCCATCTAGACCTAGCTGCT 12765
>seq29420
Length=7120
Score = 178 bits (196), Expect = 2e-39
Identities = 257/363 (71%), Gaps = 0/363 (0%)
Strand=Plus/Plus
Query 155079 TGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTA 155138
|| ||| ||||| ||||| |||||||||||||||||||| || |||| ||| | | |
Sbjct 3412 TGTTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCA 3471
Query 155139 TGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTT 155198
|| ||||| || |||||||||| || | || | ||| || || ||| | |||||
Sbjct 3472 CGGAAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTT 3531
Query 155199 CTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCA 155258
||||| || |||||||| ||| || ||||||| ||||| |||||||||||||||| |
Sbjct 3532 TTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGA 3591
Query 155259 ACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACT 155318
|| || || |||||| | | || | | ||| |||||| ||||||||||
Sbjct 3592 GCTAAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACT 3651
Query 155319 TTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGC 155378
| || |||||| || ||||| |||||||| |||||| || || | || || | ||
Sbjct 3652 TAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGC 3711
Query 155379 TGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCC 155438
||| || | ||| | | || || | |||||||| || ||||||| |||||
Sbjct 3712 TGCTACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCC 3771
Query 155439 TCT 155441
|||
Sbjct 3772 TCT 3774
>seq59
Length=339703
Score = 170 bits (188), Expect = 2e-37
Identities = 192/257 (75%), Gaps = 0/257 (0%)
Strand=Plus/Plus
Query 155422 TTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAA 155481
|| ||||||| |||||||| || | ||||||||||| |||| ||| | || |||||
Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368
Query 155482 GCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGT 155541
|| || ||||| |||||||||||||| || |||||| | | ||||| ||||| |||||
Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428
Query 155542 GGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACT 155601
|| || || ||| || |||||| ||||| ||||| || || | || | |||||
Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488
Query 155602 ACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAAC 155661
|| || | || ||| || | ||||||| ||| || ||||| ||||| ||||||||
Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548
Query 155662 ATTGTTGCTGCTCATGG 155678
||||| ||| |||||||
Sbjct 52549 ATTGTAGCTACTCATGG 52565
>seq25216
Length=8180
Score = 159 bits (176), Expect = 4e-34
Identities = 187/253 (74%), Gaps = 0/253 (0%)
Strand=Plus/Minus
Query 155330 TTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTG 155389
|||| ||||| |||||||| | |||| || || || || || | ||||| ||||
Sbjct 7255 TTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTG 7196
Query 155390 TATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCT 155449
| ||| | | || || | |||||||| || ||||||| |||||||| || || |
Sbjct 7195 TTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTT 7136
Query 155450 CTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCT 155509
|||||||||| |||| ||| | || ||||| | || ||||| |||||||||||||| |
Sbjct 7135 CTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCAT 7076
Query 155510 TCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTT 155569
| |||||| | || |||| ||||| ||||| || || || ||| ||||||||| ||||
Sbjct 7075 TTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTT 7016
Query 155570 CATTGGTGACATC 155582
| ||||| || ||
Sbjct 7015 CTTTGGTAACCTC 7003
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 582001717318640
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