Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq5412 340 2e-88 seq8546 223 4e-53 seq29420 178 2e-39 seq59 170 2e-37 seq25216 159 4e-34 >seq5412 Length=31808 Score = 340 bits (376), Expect = 2e-88 Identities = 462/645 (72%), Gaps = 6/645 (1%) Strand=Plus/Minus Query 155062 TTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTC 155121 || ||| | |||||||||||||| ||||| ||||| |||||||||||||||||||| || Sbjct 15236 TTTATTATAGCCTTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 15177 Query 155122 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAAC 155181 ||| ||| | | || || ||||| || ||||||||||| || | | | || Sbjct 15176 TTTGGATCTCTTCTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCT 15117 Query 155182 GCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTAC 155241 || || ||| | ||||| ||||| || |||||||| ||| || ||||||| ||||| ||| Sbjct 15116 GCTATAGGTTTGCACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATAC 15057 Query 155242 AATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT 155301 ||||||||||| | | || | || || |||||| | | || | | ||| Sbjct 15056 AATGGTGGTCCATATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATG 14997 Query 155302 GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATAC 155361 |||||| ||||||||||| || |||||| || ||||| |||||||| |||||| || Sbjct 14996 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTAT 14937 Query 155362 TCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCT 155421 || || || || | |||| ||||| ||| | | || || | ||| |||| Sbjct 14936 TCAGCCCCTGTTGCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGC 14877 Query 155422 TTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAA 155481 || ||| ||| |||||||| || || ||||||||||| |||| ||| | || ||||| Sbjct 14876 TTTTCTAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 14817 Query 155482 GCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGT 155541 || || ||||| |||||||||||||| || |||||| | || ||||| ||||| |||| Sbjct 14816 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGAC 14757 Query 155542 GGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACT 155601 || | || ||| | ||| ||||| ||||| || || | ||| | ||||| Sbjct 14756 GGCTACCTATTC------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACC 14703 Query 155602 ACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAAC 155661 || || | || ||| || | ||||||| | | || ||||| ||||| |||||||| Sbjct 14702 ACAGAAAATGAATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAAT 14643 Query 155662 ATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTAT 155706 || || ||||||||||| || || || || | |||||||| ||| Sbjct 14642 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/139 (76%), Gaps = 6/139 (4%) Strand=Plus/Minus Query 155819 TCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAG 155875 |||| |||||||| |||||||| || |||| ||| || || ||| ||||| | Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGA---TAGTCAAGGTCGTGTAATTAATACTTGGGCTG 14540 Query 155876 ACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACT 155935 | ||| |||||||| || |||||||||||||| ||||| || ||||| |||| |||| Sbjct 14539 ATATTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACT 14480 Query 155936 TCCCTCTTGACCTTGCTGC 155954 ||||||| ||||| || || Sbjct 14479 TCCCTCTCGACCTAGCAGC 14461 >seq8546 Length=31398 Score = 223 bits (246), Expect = 4e-53 Identities = 322/449 (72%), Gaps = 14/449 (3%) Strand=Plus/Minus Query 155512 CACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCA 155571 |||||| | || ||||| ||||| ||||| || || | ||| || |||||| ||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 155572 TTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTAC 155631 ||||| || ||| | ||| | ||||| || || | | || || | |||||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 155632 AAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGT 155691 | || || ||||| || |||||| | || ||||| ||||||||||| || || || || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 155692 CTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTT--CACTTCTTCCTTGCTG 155749 | |||||||| ||||| |||||| | || | |||| || |||||| | | || Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTC--TCATTCTTTACATTTCTTCTTAGTTG 12967 Query 155750 CATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACC 155809 | |||||||| || | || ||| ||| || | ||| | || |||||||| | || Sbjct 12966 CTTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCC 12907 Query 155810 TTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTA 155866 | ||||| ||||| |||||||| |||||||| || |||| ||| || || || Sbjct 12906 TAAACGGCTTCAATTTCAACCAATCTGTAGTTGA---TAGTCAAGGTCGTGTAAT---TA 12853 Query 155867 CATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACG 155926 ||||| || ||| ||||||||||| |||||||||||||| ||||| || ||||| | Sbjct 12852 -TTGGGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 12794 Query 155927 CTCACAACTTCCCTCTTGACCTTGCTGCT 155955 |||| ||||||| ||| ||||| |||||| Sbjct 12793 CTCATAACTTCCATCTAGACCTAGCTGCT 12765 >seq29420 Length=7120 Score = 178 bits (196), Expect = 2e-39 Identities = 257/363 (71%), Gaps = 0/363 (0%) Strand=Plus/Plus Query 155079 TGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTA 155138 || ||| ||||| ||||| |||||||||||||||||||| || |||| ||| | | | Sbjct 3412 TGTTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCA 3471 Query 155139 TGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTT 155198 || ||||| || |||||||||| || | || | ||| || || ||| | ||||| Sbjct 3472 CGGAAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTT 3531 Query 155199 CTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCA 155258 ||||| || |||||||| ||| || ||||||| ||||| |||||||||||||||| | Sbjct 3532 TTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGA 3591 Query 155259 ACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACT 155318 || || || |||||| | | || | | ||| |||||| |||||||||| Sbjct 3592 GCTAAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACT 3651 Query 155319 TTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGC 155378 | || |||||| || ||||| |||||||| |||||| || || | || || | || Sbjct 3652 TAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGC 3711 Query 155379 TGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCC 155438 ||| || | ||| | | || || | |||||||| || ||||||| ||||| Sbjct 3712 TGCTACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCC 3771 Query 155439 TCT 155441 ||| Sbjct 3772 TCT 3774 >seq59 Length=339703 Score = 170 bits (188), Expect = 2e-37 Identities = 192/257 (75%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 155422 TTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAA 155481 || ||||||| |||||||| || | ||||||||||| |||| ||| | || ||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 155482 GCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGT 155541 || || ||||| |||||||||||||| || |||||| | | ||||| ||||| ||||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 155542 GGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACT 155601 || || || ||| || |||||| ||||| ||||| || || | || | ||||| Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 155602 ACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAAC 155661 || || | || ||| || | ||||||| ||| || ||||| ||||| |||||||| Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 155662 ATTGTTGCTGCTCATGG 155678 ||||| ||| ||||||| Sbjct 52549 ATTGTAGCTACTCATGG 52565 >seq25216 Length=8180 Score = 159 bits (176), Expect = 4e-34 Identities = 187/253 (74%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 155330 TTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTG 155389 |||| ||||| |||||||| | |||| || || || || || | ||||| |||| Sbjct 7255 TTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTG 7196 Query 155390 TATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCT 155449 | ||| | | || || | |||||||| || ||||||| |||||||| || || | Sbjct 7195 TTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTT 7136 Query 155450 CTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCT 155509 |||||||||| |||| ||| | || ||||| | || ||||| |||||||||||||| | Sbjct 7135 CTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCAT 7076 Query 155510 TCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTT 155569 | |||||| | || |||| ||||| ||||| || || || ||| ||||||||| |||| Sbjct 7075 TTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTT 7016 Query 155570 CATTGGTGACATC 155582 | ||||| || || Sbjct 7015 CTTTGGTAACCTC 7003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582001717318640