Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq5412 277 5e-70 seq8546 156 1e-33 seq59 140 9e-29 seq29420 136 1e-27 seq25216 123 7e-24 >seq5412 Length=31808 Score = 277 bits (306), Expect = 5e-70 Identities = 481/695 (69%), Gaps = 12/695 (2%) Strand=Plus/Plus Query 40778 ATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCC 40837 |||||| || |||| || ||||| ||||| || ||||||||||| ||||||||||| | Sbjct 14598 ATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTCTCTTC 14657 Query 40838 TTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGA- 40896 || ||||||| | | || || | || |||||| |||| ||||| |||| || | Sbjct 14658 CTCTTGACCAAGCCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 14717 Query 40897 --TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCC 40954 | |||| || ||| | || ||| | | | | ||| | | || || || Sbjct 14718 ACTCGAGGT--TACCAAAGAA-CCATGCCT----GAATAGGTAGC--CGTCGAATACACC 14768 Query 40955 TGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAA 41014 || ||||| | ||| || ||||||||||| || |||||||| || || ||||| |||| Sbjct 14769 AGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAAT 14828 Query 41015 CATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACC 41074 |||||||||||| || ||| ||||||| ||||||||||| ||| || || | ||| Sbjct 14829 CATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATTAGAAAAGCTTCCTTAACC 14888 Query 41075 GAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAA 41134 | ||| || | ||||| ||||| ||| | | | || |||| || || |||| Sbjct 14889 AATTGGGTAGATCAAGAAAACAGCAGTAGCAGTCGCAACAGGGGCTGAATACGCAACAAC 14948 Query 41135 TATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGC 41194 ||||| || | |||||| || | | | ||||||||||| | ||| ||| || Sbjct 14949 AATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGC 15008 Query 41195 TACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTC 41254 ||| || | ||| |||||||| ||||| || | |||||| || || ||||||| ||| || Sbjct 15009 TACACCAAGTAAGAAGTGAAAAACAATTAGCTCATATGGACCACCATTGTATAACCATTC 15068 Query 41255 GTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGG 41314 || | | | |||||||| ||||| || || || | || || || | | || | Sbjct 15069 ATCAACAGATGCAGCTTCCCATATTGGATAAAAGTGCAAACCTATAGCAGCAAAAGTCTG 15128 Query 41315 AACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACG 41374 || | || ||||| ||||||||||| ||||| | | || || |||| || ||||| Sbjct 15129 AATAATGGCACCAGAGATAATATTGTTTCCGTAAAGAAGAGATCCAAAAACAGGTTCACG 15188 Query 41375 TATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAAACATGTGGTAGC 41434 || ||||| |||||||| || || || || || ||||| || || || | || || Sbjct 15189 AATACCATCAATATCTACCGGAGGAGCAGCAATGAAGGCTATAATAAATACGGATGTTGC 15248 Query 41435 AGTTAGTAATGCTGGAATCATTAGCACACCAAACC 41469 || | ||| | |||||||| | || ||||||| Sbjct 15249 GGTCAATAAGGTAGGAATCATCAAAACGCCAAACC 15283 >seq8546 Length=31398 Score = 156 bits (172), Expect = 1e-33 Identities = 252/362 (70%), Gaps = 4/362 (1%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||| | ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 12765 AGCAGCTAGGTCTAGATGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 12824 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | ||||| || ||| |||||| ||| || ||| | | || ||||| Sbjct 12825 GTTAGCGCGGTTAATAATATCGGCCCAA----TAATTACACGACCTTGACTATCAACTAC 12880 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 || ||||| || || || || || ||| |||| ||||||||| ||||| | | || Sbjct 12881 AGATTGGTTGAAATTGAAGCCGTTTAGGATAAATGCCATAGTACTAATACCTAAAGTAGT 12940 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTT 40768 || |||||| || | || || ||||| | | ||||| |||| | | | || ||| Sbjct 12941 AAACCATATACCTACTACAGGCCAAGCAACTAAGAAGAAATGTAAAGAATGAGAATCGTT 13000 Query 40769 GAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATA 40828 ||| ||||||||| || || | || ||||| ||||| || |||||||| || || | Sbjct 13001 GAAACTAGCATATTGGAAGATGAATCGGCCAAAATAACCATGAGCAGCTACAATATTCTT 13060 Query 40829 AGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTC 40888 ||| || | || |||||||| | || || | || |||| | |||| ||||| || Sbjct 13061 AGTTTCCTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTTATTTTCTGTGGTTTC 13120 Query 40889 CC 40890 || Sbjct 13121 CC 13122 >seq59 Length=339703 Score = 140 bits (154), Expect = 9e-29 Identities = 190/262 (73%), Gaps = 6/262 (2%) Strand=Plus/Minus Query 40804 AACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGT 40863 |||| || | |||||| || ||||||||||| | || ||||||||| | || || | | Sbjct 52567 AACCATGAGTAGCTACAATATTATAAGTCTCTTCCTCTTGACCAAACCTGTAACCTTCAT 52508 Query 40864 TCTGTGATTCAGTTTCCGTGGTCTCCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGT 40920 | |||||| |||| ||||| |||| ||| | | |||| || ||| | || | Sbjct 52507 TAGTAGATTCATTTTCTGTGGTTTCCCTAATCAAACTCGAGGT--TACCAAAGAA-CCAT 52451 Query 40921 GCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGT 40980 ||||| || || | | || || || || || || |||| | ||| || ||||||| Sbjct 52450 GCATAACACTGAATAGGGAGCCGCCGAATACACCAGCTACGCTTAACATGTGAAATGGGT 52391 Query 40981 GCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTC 41040 |||| || |||||||| || || ||||| |||| |||||||||||| || ||| | || Sbjct 52390 GCATAAGGATGTTGTGCTCAGCATGGAATACAATCATGAAGTTGAAAGTACCAGAAACTC 52331 Query 41041 CTAAAGGCATACCATCAGAGAA 41062 ||| ||||||||||||||| || Sbjct 52330 CTAGAGGCATACCATCAGAAAA 52309 >seq29420 Length=7120 Score = 136 bits (150), Expect = 1e-27 Identities = 249/362 (69%), Gaps = 2/362 (1%) Strand=Plus/Minus Query 41041 CTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTA 41100 ||| ||||||||||||||| || || ||||| | ||| || | ||||| | || || Sbjct 3776 CTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAG-TA 3718 Query 41101 G-AGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTG 41159 | ||| || | | ||| ||| || || ||| ||||| || | |||||| || | | Sbjct 3717 GTAGCAGCCGCAACAGGAACTGAATACGCAACAGCAATCCAAGGGCGCATACCCAGACGG 3658 Query 41160 TATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACA 41219 | ||||||||||| | ||| ||| ||||| || | ||| ||||| || ||| Sbjct 3657 AAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGCAAAACA 3598 Query 41220 ATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATT 41279 | || | ||| || || || ||||||| ||| || || | | | |||||||| ||| Sbjct 3597 TTTAGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCATATT 3538 Query 41280 GGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTG 41339 || || || || | || || || ||| |||||| | | ||||| ||||||||| Sbjct 3537 GGATAAAAGTGCAAACCTATAGCAGCAGAAGTCGGAATAATGTCACCAGAGATAATATTG 3478 Query 41340 TTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGT 41399 || |||| | | || || ||||| || ||||| || ||||| |||||||| || || Sbjct 3477 TTTCCGTGAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGA 3418 Query 41400 GC 41401 || Sbjct 3417 GC 3416 >seq25216 Length=8180 Score = 123 bits (136), Expect = 7e-24 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 40917 CCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAAT 40976 || ||||||||| || | | || || || || || | ||||| | ||| || ||| Sbjct 7018 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCATCTACGCCTAACATGTGAAAT 7077 Query 40977 GGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTG 41036 |||||||| || |||||||| || | ||||| |||| |||||||||||| || ||| Sbjct 7078 GGGTGCATAAGGATGTTGTGCTCAGACTGGAATACAATCATGAAGTTGAAAGTACCAGAA 7137 Query 41037 ATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACA 41096 ||||||| ||||||||||||||| || || ||||| | ||| || | ||||| ||| Sbjct 7138 ATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACA 7197 Query 41097 GCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACC 41152 || ||| || | | ||||||| || || | | ||||| || | |||||| Sbjct 7198 GCAGTAGCAGCCGCAACAGGAGCTGAATACGCAATAGCAATCCAAGGGCGCATACC 7253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143040984017196