Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq5412 352 3e-92 seq8546 219 5e-52 seq25216 194 2e-44 seq59 194 2e-44 seq29420 161 1e-34 >seq5412 Length=31808 Score = 352 bits (390), Expect = 3e-92 Identities = 493/692 (71%), Gaps = 6/692 (1%) Strand=Plus/Plus Query 67607 ATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTC 67666 ||| |||||||| || || || || || ||||||||||| || || || ||||||||||| Sbjct 14598 ATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTCTCTTC 14657 Query 67667 TTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAG 67726 ||||| || | | ||||||| | || || || | || || ||||| ||||| | Sbjct 14658 CTCTTGACCAAGCCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 14717 Query 67727 AGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGC 67786 | || || || | |||||| ||| || || || | || |||||||||| || Sbjct 14718 ACTCGAGGTTACCAAAGAACCATGC------CTGAATAGGTAGCCGTCGAATACACCAGC 14771 Query 67787 TACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACAT 67846 ||| || | ||| || |||||||||||||||||||||||||| || ||||| || | ||| Sbjct 14772 TACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCAT 14831 Query 67847 GTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAA 67906 | |||| |||||||||||||| || |||||||| | | ||| || |||| ||| | Sbjct 14832 GAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATTAGAAAAGCTTCCTTAACCAAT 14891 Query 67907 AGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGAT 67966 || |||| |||||| ||||| || | | || || || || || || ||| || Sbjct 14892 TGGGTAGATCAAGAAAACAGCAGTAGCAGTCGCAACAGGGGCTGAATACGCAACAACAAT 14951 Query 67967 CCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTGAT 68026 |||||| |||||||| |||||| || ||||||||||| |||||| ||| | | Sbjct 14952 CCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTAC 15011 Query 68027 TCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATC 68086 || | | |||||| || || | || | | || |||||||| || ||||| ||||| Sbjct 15012 ACCAAGTAAGAAGTGAAAAACAATTAGCTCATATGGACCACCATTGTATAACCATTCATC 15071 Query 68087 TAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAAC 68146 | || ||| |||||||| || ||||| ||||| | ||| || || || | ||| Sbjct 15072 AACAGATGCAGCTTCCCATATTGGATAAAAGTGCAAACCTATAGCAGCAAAAGTCTGAAT 15131 Query 68147 AACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGAT 68206 || |||||||| || || ||||| ||||| | || || || ||||||||| | || Sbjct 15132 AATGGCACCAGAGATAATATTGTTTCCGTAAAGAAGAGATCCAAAAACAGGTTCACGAAT 15191 Query 68207 ACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGC 68266 |||||| ||||| || ||||| || |||||||| || || || || | || ||| | Sbjct 15192 ACCATCAATATCTACCGGAGGAGCAGCAATGAAGGCTATAATAAATACGGATGTTGCGGT 15251 Query 68267 GAGCAAGCAAGGAATCATCAACACACCGAACC 68298 | ||| |||||||||||| || || |||| Sbjct 15252 CAATAAGGTAGGAATCATCAAAACGCCAAACC 15283 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/139 (74%), Gaps = 6/139 (4%) Strand=Plus/Plus Query 67359 GCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGT 67418 || || ||||| ||||||||||| |||| ||||| || |||||||||||||| ||||| Sbjct 14461 GCTGCTAGGTCGAGAGGGAAGTTAGGAGCATTACGTTCATGCATAACTTCCATACCAAGG 14520 Query 67419 CCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT---GCGTCAACG 67475 | | ||||| || || ||||||||| ||| || || |||| ||||| Sbjct 14521 TTAGTGCGGTTAATAATATCAGCCCAAGTATTAATTAC---ACGACCTTGACTATCAACT 14577 Query 67476 ACGGATTGGTTGAAGTTGA 67494 || ||||||||||| |||| Sbjct 14578 ACAGATTGGTTGAAATTGA 14596 >seq8546 Length=31398 Score = 219 bits (242), Expect = 5e-52 Identities = 320/449 (71%), Gaps = 14/449 (3%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||| ||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 12765 AGCAGCTAGGTCTAGATGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 12824 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||||| || || |||||| ||| || || |||| ||||| Sbjct 12825 GTTAGCGCGGTTAATAATATCGGCCCAAT----AATTAC---ACGACCTTGACTATCAAC 12877 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| ||||| ||||| ||| | ||||||||||| | ||| | | Sbjct 12878 TACAGATTGGTTGAAATTGAAGCCGTTTAGGATAAATGCCATAGTACTAATACCTAAAGT 12937 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAA--GTGAAGACTTCTTGAG 67592 ||| ||||| || | || ||||| | ||| | | |||||| || |||| | || Sbjct 12938 AGTAAACCATATACCTACTACAGGCCAAGCAACTAAGAAGAAATGTAAAGAAT--GAGAA 12995 Query 67593 TTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATG 67652 | ||||||| ||||| |||||||| || || || || || ||||||||||| ||||| Sbjct 12996 TCGTTGAAACTAGCATATTGGAAGATGAATCGGCCAAAATAACCATGAGCAGCTACAATA 13055 Query 67653 TTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTA 67712 || | ||| || || ||||| || || ||||||| | || || | | || || Sbjct 13056 TTCTTAGTTTCCTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTTATTTTCTGTG 13115 Query 67713 GTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCA 67772 ||||| ||||| | | ||| || || | |||||| |||||| |||| || | || || Sbjct 13116 GTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAACACTGAATATGGAGCCG 13175 Query 67773 CCGAATACACCTGCTACTCCAAGCATATG 67801 ||||||||||| ||||| || | ||| || Sbjct 13176 CCGAATACACCAGCTACGCCTAACATGTG 13204 >seq25216 Length=8180 Score = 194 bits (214), Expect = 2e-44 Identities = 208/274 (76%), Gaps = 1/274 (0%) Strand=Plus/Plus Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAA 67769 || ||||| ||||| | | || || || | |||||| ||||||||||| || || || Sbjct 6983 GTGGTTTC-CTGATCAAACTCGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAG 7041 Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCT 67829 || ||||||||||| |||| || | ||| || |||||||||||||||||||||||||| Sbjct 7042 CCGCCGAATACACCATCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 7101 Query 67830 GCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAG 67889 | ||||| || | |||| |||| |||||||||||||| || |||||||| | ||||| Sbjct 7102 GACTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAA 7161 Query 67890 AAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCA 67949 || |||||||| | || |||| |||||| ||||| || || | || ||||| Sbjct 7162 AAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCT 7221 Query 67950 GAGTATGCTACACAGATCCAAGGACGCATACCAA 67983 || || || | | |||||||| |||||||||| Sbjct 7222 GAATACGCAATAGCAATCCAAGGGCGCATACCAA 7255 >seq59 Length=339703 Score = 194 bits (214), Expect = 2e-44 Identities = 197/257 (77%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 67635 CCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTC 67694 ||||||| ||| ||||| || ||||||||||| ||||| || ||| ||||||| | || Sbjct 52565 CCATGAGTAGCTACAATATTATAAGTCTCTTCCTCTTGACCAAACCTGTAACCTTCATTA 52506 Query 67695 TGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATA 67754 || || | || || ||||| || || | | || || || | |||||| |||||| Sbjct 52505 GTAGATTCATTTTCTGTGGTTTCCCTAATCAAACTCGAGGTTACCAAAGAACCATGCATA 52446 Query 67755 GCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATA 67814 |||| || || || || ||||||||||| ||||| | | ||| || |||||||||||| Sbjct 52445 ACACTGAATAGGGAGCCGCCGAATACACCAGCTACGCTTAACATGTGAAATGGGTGCATA 52386 Query 67815 AGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGA 67874 |||||||||||||| || ||||| || | |||| |||| ||||||||||||| || ||| Sbjct 52385 AGGATGTTGTGCTCAGCATGGAATACAATCATGAAGTTGAAAGTACCAGAAACTCCTAGA 52326 Query 67875 GGCATTGCGTCAGAGAA 67891 ||||| | ||||| || Sbjct 52325 GGCATACCATCAGAAAA 52309 >seq29420 Length=7120 Score = 161 bits (178), Expect = 1e-34 Identities = 251/359 (70%), Gaps = 0/359 (0%) Strand=Plus/Minus Query 67872 AGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAAT 67931 |||||||| | ||||| || |||||||| | || |||| |||||| | || Sbjct 3774 AGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGTAGTA 3715 Query 67932 GCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAA 67991 || || | || ||| | || || || ||| |||||||| |||||||| |||||| || Sbjct 3714 GCAGCCGCAACAGGAACTGAATACGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 3655 Query 67992 GAAAGTTCCCACTGACGACCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACA 68051 ||||||||||| |||||| ||| | | || | | |||||| || || Sbjct 3654 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGCAAAACATTT 3595 Query 68052 AGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGA 68111 || | |||| |||||||| || ||||| ||||| | || ||| |||||||| || ||| Sbjct 3594 AGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCATATTGGA 3535 Query 68112 TAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTA 68171 || ||||| | ||| || || ||| | |||| || ||||||| || || ||||| Sbjct 3534 TAAAAGTGCAAACCTATAGCAGCAGAAGTCGGAATAATGTCACCAGAGATAATATTGTTT 3475 Query 68172 CCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGC 68230 |||| | || || || | ||||||||| | |||||||| ||||| || ||||| || Sbjct 3474 CCGTGAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGAGC 3416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564200383337040