Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_021071.1
Length=177211
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 352 3e-92
seq8546 219 5e-52
seq25216 194 2e-44
seq59 194 2e-44
seq29420 161 1e-34
>seq5412
Length=31808
Score = 352 bits (390), Expect = 3e-92
Identities = 493/692 (71%), Gaps = 6/692 (1%)
Strand=Plus/Plus
Query 67607 ATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTC 67666
||| |||||||| || || || || || ||||||||||| || || || |||||||||||
Sbjct 14598 ATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTCTCTTC 14657
Query 67667 TTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAG 67726
||||| || | | ||||||| | || || || | || || ||||| ||||| |
Sbjct 14658 CTCTTGACCAAGCCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 14717
Query 67727 AGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGC 67786
| || || || | |||||| ||| || || || | || |||||||||| ||
Sbjct 14718 ACTCGAGGTTACCAAAGAACCATGC------CTGAATAGGTAGCCGTCGAATACACCAGC 14771
Query 67787 TACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACAT 67846
||| || | ||| || |||||||||||||||||||||||||| || ||||| || | |||
Sbjct 14772 TACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCAT 14831
Query 67847 GTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAA 67906
| |||| |||||||||||||| || |||||||| | | ||| || |||| ||| |
Sbjct 14832 GAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATTAGAAAAGCTTCCTTAACCAAT 14891
Query 67907 AGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGAT 67966
|| |||| |||||| ||||| || | | || || || || || || ||| ||
Sbjct 14892 TGGGTAGATCAAGAAAACAGCAGTAGCAGTCGCAACAGGGGCTGAATACGCAACAACAAT 14951
Query 67967 CCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTGAT 68026
|||||| |||||||| |||||| || ||||||||||| |||||| ||| | |
Sbjct 14952 CCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTAC 15011
Query 68027 TCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATC 68086
|| | | |||||| || || | || | | || |||||||| || ||||| |||||
Sbjct 15012 ACCAAGTAAGAAGTGAAAAACAATTAGCTCATATGGACCACCATTGTATAACCATTCATC 15071
Query 68087 TAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAAC 68146
| || ||| |||||||| || ||||| ||||| | ||| || || || | |||
Sbjct 15072 AACAGATGCAGCTTCCCATATTGGATAAAAGTGCAAACCTATAGCAGCAAAAGTCTGAAT 15131
Query 68147 AACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGAT 68206
|| |||||||| || || ||||| ||||| | || || || ||||||||| | ||
Sbjct 15132 AATGGCACCAGAGATAATATTGTTTCCGTAAAGAAGAGATCCAAAAACAGGTTCACGAAT 15191
Query 68207 ACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGC 68266
|||||| ||||| || ||||| || |||||||| || || || || | || ||| |
Sbjct 15192 ACCATCAATATCTACCGGAGGAGCAGCAATGAAGGCTATAATAAATACGGATGTTGCGGT 15251
Query 68267 GAGCAAGCAAGGAATCATCAACACACCGAACC 68298
| ||| |||||||||||| || || ||||
Sbjct 15252 CAATAAGGTAGGAATCATCAAAACGCCAAACC 15283
Score = 86.0 bits (94), Expect = 7e-12
Identities = 103/139 (74%), Gaps = 6/139 (4%)
Strand=Plus/Plus
Query 67359 GCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGT 67418
|| || ||||| ||||||||||| |||| ||||| || |||||||||||||| |||||
Sbjct 14461 GCTGCTAGGTCGAGAGGGAAGTTAGGAGCATTACGTTCATGCATAACTTCCATACCAAGG 14520
Query 67419 CCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT---GCGTCAACG 67475
| | ||||| || || ||||||||| ||| || || |||| |||||
Sbjct 14521 TTAGTGCGGTTAATAATATCAGCCCAAGTATTAATTAC---ACGACCTTGACTATCAACT 14577
Query 67476 ACGGATTGGTTGAAGTTGA 67494
|| ||||||||||| ||||
Sbjct 14578 ACAGATTGGTTGAAATTGA 14596
>seq8546
Length=31398
Score = 219 bits (242), Expect = 5e-52
Identities = 320/449 (71%), Gaps = 14/449 (3%)
Strand=Plus/Plus
Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417
|||||| ||||| ||| ||||||| ||||| ||||| || |||||||||||||| |||||
Sbjct 12765 AGCAGCTAGGTCTAGATGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 12824
Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474
|| | ||||| || || |||||| ||| || || |||| |||||
Sbjct 12825 GTTAGCGCGGTTAATAATATCGGCCCAAT----AATTAC---ACGACCTTGACTATCAAC 12877
Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534
|| ||||||||||| ||||| ||||| ||| | ||||||||||| | ||| | |
Sbjct 12878 TACAGATTGGTTGAAATTGAAGCCGTTTAGGATAAATGCCATAGTACTAATACCTAAAGT 12937
Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAA--GTGAAGACTTCTTGAG 67592
||| ||||| || | || ||||| | ||| | | |||||| || |||| | ||
Sbjct 12938 AGTAAACCATATACCTACTACAGGCCAAGCAACTAAGAAGAAATGTAAAGAAT--GAGAA 12995
Query 67593 TTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATG 67652
| ||||||| ||||| |||||||| || || || || || ||||||||||| |||||
Sbjct 12996 TCGTTGAAACTAGCATATTGGAAGATGAATCGGCCAAAATAACCATGAGCAGCTACAATA 13055
Query 67653 TTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTA 67712
|| | ||| || || ||||| || || ||||||| | || || | | || ||
Sbjct 13056 TTCTTAGTTTCCTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTTATTTTCTGTG 13115
Query 67713 GTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCA 67772
||||| ||||| | | ||| || || | |||||| |||||| |||| || | || ||
Sbjct 13116 GTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAACACTGAATATGGAGCCG 13175
Query 67773 CCGAATACACCTGCTACTCCAAGCATATG 67801
||||||||||| ||||| || | ||| ||
Sbjct 13176 CCGAATACACCAGCTACGCCTAACATGTG 13204
>seq25216
Length=8180
Score = 194 bits (214), Expect = 2e-44
Identities = 208/274 (76%), Gaps = 1/274 (0%)
Strand=Plus/Plus
Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAA 67769
|| ||||| ||||| | | || || || | |||||| ||||||||||| || || ||
Sbjct 6983 GTGGTTTC-CTGATCAAACTCGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAG 7041
Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCT 67829
|| ||||||||||| |||| || | ||| || ||||||||||||||||||||||||||
Sbjct 7042 CCGCCGAATACACCATCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 7101
Query 67830 GCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAG 67889
| ||||| || | |||| |||| |||||||||||||| || |||||||| | |||||
Sbjct 7102 GACTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAA 7161
Query 67890 AAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCA 67949
|| |||||||| | || |||| |||||| ||||| || || | || |||||
Sbjct 7162 AAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCT 7221
Query 67950 GAGTATGCTACACAGATCCAAGGACGCATACCAA 67983
|| || || | | |||||||| ||||||||||
Sbjct 7222 GAATACGCAATAGCAATCCAAGGGCGCATACCAA 7255
>seq59
Length=339703
Score = 194 bits (214), Expect = 2e-44
Identities = 197/257 (77%), Gaps = 0/257 (0%)
Strand=Plus/Minus
Query 67635 CCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTC 67694
||||||| ||| ||||| || ||||||||||| ||||| || ||| ||||||| | ||
Sbjct 52565 CCATGAGTAGCTACAATATTATAAGTCTCTTCCTCTTGACCAAACCTGTAACCTTCATTA 52506
Query 67695 TGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATA 67754
|| || | || || ||||| || || | | || || || | |||||| ||||||
Sbjct 52505 GTAGATTCATTTTCTGTGGTTTCCCTAATCAAACTCGAGGTTACCAAAGAACCATGCATA 52446
Query 67755 GCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATA 67814
|||| || || || || ||||||||||| ||||| | | ||| || ||||||||||||
Sbjct 52445 ACACTGAATAGGGAGCCGCCGAATACACCAGCTACGCTTAACATGTGAAATGGGTGCATA 52386
Query 67815 AGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGA 67874
|||||||||||||| || ||||| || | |||| |||| ||||||||||||| || |||
Sbjct 52385 AGGATGTTGTGCTCAGCATGGAATACAATCATGAAGTTGAAAGTACCAGAAACTCCTAGA 52326
Query 67875 GGCATTGCGTCAGAGAA 67891
||||| | ||||| ||
Sbjct 52325 GGCATACCATCAGAAAA 52309
>seq29420
Length=7120
Score = 161 bits (178), Expect = 1e-34
Identities = 251/359 (70%), Gaps = 0/359 (0%)
Strand=Plus/Minus
Query 67872 AGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAAT 67931
|||||||| | ||||| || |||||||| | || |||| |||||| | ||
Sbjct 3774 AGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGTAGTA 3715
Query 67932 GCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAA 67991
|| || | || ||| | || || || ||| |||||||| |||||||| |||||| ||
Sbjct 3714 GCAGCCGCAACAGGAACTGAATACGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 3655
Query 67992 GAAAGTTCCCACTGACGACCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACA 68051
||||||||||| |||||| ||| | | || | | |||||| || ||
Sbjct 3654 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGCAAAACATTT 3595
Query 68052 AGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGA 68111
|| | |||| |||||||| || ||||| ||||| | || ||| |||||||| || |||
Sbjct 3594 AGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCATATTGGA 3535
Query 68112 TAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTA 68171
|| ||||| | ||| || || ||| | |||| || ||||||| || || |||||
Sbjct 3534 TAAAAGTGCAAACCTATAGCAGCAGAAGTCGGAATAATGTCACCAGAGATAATATTGTTT 3475
Query 68172 CCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGC 68230
|||| | || || || | ||||||||| | |||||||| ||||| || ||||| ||
Sbjct 3474 CCGTGAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGAGC 3416
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 564200383337040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |