Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_021072.1
Length=178807
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 414 1e-110
seq8546 250 3e-61
seq29420 215 6e-51
seq59 201 1e-46
seq25216 196 5e-45
seq8085 86.0 7e-12
>seq5412
Length=31808
Score = 414 bits (458), Expect = 1e-110
Identities = 511/694 (74%), Gaps = 10/694 (1%)
Strand=Plus/Plus
Query 68088 ATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTC 68147
||| |||||||| | || || || || ||||| ||||| || || || |||||||||||
Sbjct 14598 ATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTCTCTTC 14657
Query 68148 TTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACCAG 68207
|||||||| | | ||||||| | || || ||| |||| |||||||| | | ||
Sbjct 14658 CTCTTGACCAAGCCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 14717
Query 68208 TGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGC 68267
|| || |||| ||||||||| ||||| || | || | ||||| |||||
Sbjct 14718 ACTCGAGGTTACCAAAGAACCATGC------CTGAATAGGTAGCCGTCGAATACACCAGC 14771
Query 68268 AACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCAT 68327
||||| | ||| || || |||||||| |||||||||||||| || ||||| || | |||
Sbjct 14772 TACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCAT 14831
Query 68328 GTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAA 68387
| ||||||||||||||||||| || |||||||| | | ||| || |||| ||| |
Sbjct 14832 GAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATTAGAAAAGCTTCCTTAACCAAT 14891
Query 68388 AGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAGAT 68447
|| |||| || ||| || || | || | |||||||| || || || |||||| ||
Sbjct 14892 TGGGTAGATCAAGAAAACAGCAGTAGCAGTCGCAACAGGGGCTGAATACGCAACAACAAT 14951
Query 68448 CCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCAAAGAT 68507
|||||| |||||||| ||||| | ||||||||| ||||| |||||||| | |
Sbjct 14952 CCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTAC 15011
Query 68508 ACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCACTCATC 68567
||||| | ||||||||| | | || | | |||||||||||||| ||||| |||||
Sbjct 15012 ACCAAGTAAGAAGTGAAAAACAATTAGCTCATATGGACCACCATTGTATAACCATTCATC 15071
Query 68568 AAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGGAAC 68627
|| | ||| |||||||| || ||||||||||| | ||| || ||| || | |||
Sbjct 15072 AACAGATGCAGCTTCCCATATTGGATAAAAGTGCAAACCTATAGCAGCAAAAGTCTGAAT 15131
Query 68628 AACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAAT 68687
|| |||||||| || || ||||| || || ||||| || ||| |||||||||||||||
Sbjct 15132 AATGGCACCAGAGATAATATTGTTTCCGTAAAGAAGAGATCCAAAAACAGGTTCACGAAT 15191
Query 68688 ACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGATGGTTGCTG 68746
|||||| || || || || |||||||| |||||||| | || || || ||| ||||| |
Sbjct 15192 ACCATCAATATCTACCGGAGGAGCAGCAATGAAGGCTATAATAAATACGGAT-GTTGCGG 15250
Query 68747 -CAAGCAGCGTAGGGATCATCAGGACGCCGAACC 68779
||| || ||||| ||||||| ||||| ||||
Sbjct 15251 TCAATAAG-GTAGGAATCATCAAAACGCCAAACC 15283
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 67840 GCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAAA 67899
|| || ||||||||||||||||| | || ||||| |||||||||||||||||||| |
Sbjct 14461 GCTGCTAGGTCGAGAGGGAAGTTAGGAGCATTACGTTCATGCATAACTTCCATACCAAGG 14520
Query 67900 CCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGATA 67959
|| |||||| | || || ||||| ||| | || ||| |||||||| | |
Sbjct 14521 TTAGTGCGGTTAATAATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACA 14580
Query 67960 GACTGGTTGAAGTTGA 67975
|| |||||||| ||||
Sbjct 14581 GATTGGTTGAAATTGA 14596
>seq8546
Length=31398
Score = 250 bits (276), Expect = 3e-61
Identities = 323/444 (73%), Gaps = 4/444 (1%)
Strand=Plus/Plus
Query 67839 AGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAA 67898
|||||| ||||| ||| ||||||| || || ||||| |||||||||||||||||||| |
Sbjct 12765 AGCAGCTAGGTCTAGATGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 12824
Query 67899 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGAT 67958
||||||||| | || || ||||| || | || ||| |||||||| |
Sbjct 12825 GTTAGCGCGGTTAATAATATCGGCCCAA-TA---ATTACACGACCTTGACTATCAACTAC 12880
Query 67959 AGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGT 68018
||| |||||||| ||||| || || ||| | |||||||| || |||| ||| | | |||
Sbjct 12881 AGATTGGTTGAAATTGAAGCCGTTTAGGATAAATGCCATAGTACTAATACCTAAAGTAGT 12940
Query 68019 GAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTT 68078
||||| ||||| || |||||||| ||| | | |||||| || | ||| | || | |||
Sbjct 12941 AAACCATATACCTACTACAGGCCAAGCAACTAAGAAGAAATGTAAAGAATGAGAATCGTT 13000
Query 68079 GAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTA 68138
||| ||||| |||||||| | || || || || ||||| ||||| ||||| || |
Sbjct 13001 GAAACTAGCATATTGGAAGATGAATCGGCCAAAATAACCATGAGCAGCTACAATATTCTT 13060
Query 68139 AGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTC 68198
||| || || |||||||| || ||||||| | || ||| | | |||| ||||||||
Sbjct 13061 AGTTTCCTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTTATTTTCTGTGGTTTC 13120
Query 68199 ACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAA 68258
| | || ||| || |||| ||||||||||| ||||||| | || || || ||
Sbjct 13121 CCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAACACTGAATATGGAGCCGCCGAA 13180
Query 68259 TACGCCAGCAACGCCGAGCATATG 68282
||| ||||| ||||| | ||| ||
Sbjct 13181 TACACCAGCTACGCCTAACATGTG 13204
>seq29420
Length=7120
Score = 215 bits (238), Expect = 6e-51
Identities = 266/362 (73%), Gaps = 4/362 (1%)
Strand=Plus/Minus
Query 68353 AGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGAT 68412
|||||||| | ||||| || |||||||| | || |||| || ||| | | |
Sbjct 3774 AGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGTAGTA 3715
Query 68413 GCTGCTGCAACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAG 68472
|| || |||||||| | || || |||||| |||||||| |||||||| ||||| |
Sbjct 3714 GCAGCCGCAACAGGAACTGAATACGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 3655
Query 68473 GAAAGTTCCCATTCACGTCCCATGTATGCAAAGATACCAATCAGGAAGTG--AAAGATTA 68530
||||||||| ||||| |||||||| | | ||||| | |||||| ||| |||
Sbjct 3654 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGCAAAACATTT 3595
Query 68531 CGAGTTGGAAAGGACCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGG 68590
|| | |||||||||||||||| ||||| ||||||| | ||| |||||||| || |
Sbjct 3594 --AGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCATATTG 3537
Query 68591 GATAAAAGTGAAGACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGT 68650
|||||||||| | ||| || ||| ||| | |||| || ||||||| || || ||||
Sbjct 3536 GATAAAAGTGCAAACCTATAGCAGCAGAAGTCGGAATAATGTCACCAGAGATAATATTGT 3477
Query 68651 TACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAG 68710
| || | ||||| || |||| ||||||||||||||||||||| || || || || ||||
Sbjct 3476 TTCCGTGAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGAG 3417
Query 68711 CA 68712
||
Sbjct 3416 CA 3415
>seq59
Length=339703
Score = 201 bits (222), Expect = 1e-46
Identities = 200/259 (77%), Gaps = 0/259 (0%)
Strand=Plus/Minus
Query 68116 CCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTC 68175
||||| | ||| ||||| || ||||||||||| |||||||| ||| ||||||| | ||
Sbjct 52565 CCATGAGTAGCTACAATATTATAAGTCTCTTCCTCTTGACCAAACCTGTAACCTTCATTA 52506
Query 68176 TGGGACTCAGTTTCAGTGGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATT 68235
|| ||| |||| |||||||| | || || || || |||| |||||||||||
Sbjct 52505 GTAGATTCATTTTCTGTGGTTTCCCTAATCAAACTCGAGGTTACCAAAGAACCATGCATA 52446
Query 68236 GCACTGAACAGAGATCCACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATC 68295
||||||| || || || || ||||| ||||| |||| | ||| || || ||||||||
Sbjct 52445 ACACTGAATAGGGAGCCGCCGAATACACCAGCTACGCTTAACATGTGAAATGGGTGCATA 52386
Query 68296 AGGATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGA 68355
|||||||||||||| || ||||| || | |||| |||||||||||||||||| || |||
Sbjct 52385 AGGATGTTGTGCTCAGCATGGAATACAATCATGAAGTTGAAAGTACCAGAAACTCCTAGA 52326
Query 68356 GGCATTGCGTCAGAGAACG 68374
||||| | ||||| ||||
Sbjct 52325 GGCATACCATCAGAAAACG 52307
>seq25216
Length=8180
Score = 196 bits (216), Expect = 5e-45
Identities = 195/253 (77%), Gaps = 0/253 (0%)
Strand=Plus/Plus
Query 68212 GAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAACG 68271
|| || |||| ||||||||||| |||||||| || || || || ||||| ||| | |||
Sbjct 7003 GAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCATCTACG 7062
Query 68272 CCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATGTAG 68331
|| | ||| || || |||||||| |||||||||||||| | ||||| || | |||| ||
Sbjct 7063 CCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGACTGGAATACAATCATGAAG 7122
Query 68332 TTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGA 68391
||||||||||||||||| || |||||||| | ||||| || |||||||| | ||
Sbjct 7123 TTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGG 7182
Query 68392 TAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAGATCCAA 68451
|||| || ||| || || | || || |||||||| || || || |||| | ||||||
Sbjct 7183 TAGATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCTGAATACGCAATAGCAATCCAA 7242
Query 68452 GGACGCATACCAA 68464
|| ||||||||||
Sbjct 7243 GGGCGCATACCAA 7255
>seq8085
Length=24635
Score = 86.0 bits (94), Expect = 7e-12
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 68577 TGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGGAACAACAGCACC 68636
|||| |||| || |||||||| || | ||| || ||| ||| | |||| || | |||
Sbjct 19805 TGCTACCCACATTGGATAAAATTGCAAACCTATAGCAGCAGAAGTCGGAATAATGGAACC 19864
Query 68637 AGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGAT 68696
||| | || ||||| || || ||||| || |||| |||||||||||| |||||||| ||
Sbjct 19865 AGAGAAAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGGATACCATCAAT 19924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569282839336080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |