Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq5412 414 1e-110 seq8546 250 3e-61 seq29420 215 6e-51 seq59 201 1e-46 seq25216 196 5e-45 seq8085 86.0 7e-12 >seq5412 Length=31808 Score = 414 bits (458), Expect = 1e-110 Identities = 511/694 (74%), Gaps = 10/694 (1%) Strand=Plus/Plus Query 68088 ATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTC 68147 ||| |||||||| | || || || || ||||| ||||| || || || ||||||||||| Sbjct 14598 ATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTCTCTTC 14657 Query 68148 TTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACCAG 68207 |||||||| | | ||||||| | || || ||| |||| |||||||| | | || Sbjct 14658 CTCTTGACCAAGCCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 14717 Query 68208 TGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGC 68267 || || |||| ||||||||| ||||| || | || | ||||| ||||| Sbjct 14718 ACTCGAGGTTACCAAAGAACCATGC------CTGAATAGGTAGCCGTCGAATACACCAGC 14771 Query 68268 AACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCAT 68327 ||||| | ||| || || |||||||| |||||||||||||| || ||||| || | ||| Sbjct 14772 TACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCAT 14831 Query 68328 GTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAA 68387 | ||||||||||||||||||| || |||||||| | | ||| || |||| ||| | Sbjct 14832 GAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATTAGAAAAGCTTCCTTAACCAAT 14891 Query 68388 AGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAGAT 68447 || |||| || ||| || || | || | |||||||| || || || |||||| || Sbjct 14892 TGGGTAGATCAAGAAAACAGCAGTAGCAGTCGCAACAGGGGCTGAATACGCAACAACAAT 14951 Query 68448 CCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCAAAGAT 68507 |||||| |||||||| ||||| | ||||||||| ||||| |||||||| | | Sbjct 14952 CCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTAC 15011 Query 68508 ACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCACTCATC 68567 ||||| | ||||||||| | | || | | |||||||||||||| ||||| ||||| Sbjct 15012 ACCAAGTAAGAAGTGAAAAACAATTAGCTCATATGGACCACCATTGTATAACCATTCATC 15071 Query 68568 AAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGGAAC 68627 || | ||| |||||||| || ||||||||||| | ||| || ||| || | ||| Sbjct 15072 AACAGATGCAGCTTCCCATATTGGATAAAAGTGCAAACCTATAGCAGCAAAAGTCTGAAT 15131 Query 68628 AACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAAT 68687 || |||||||| || || ||||| || || ||||| || ||| ||||||||||||||| Sbjct 15132 AATGGCACCAGAGATAATATTGTTTCCGTAAAGAAGAGATCCAAAAACAGGTTCACGAAT 15191 Query 68688 ACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGATGGTTGCTG 68746 |||||| || || || || |||||||| |||||||| | || || || ||| ||||| | Sbjct 15192 ACCATCAATATCTACCGGAGGAGCAGCAATGAAGGCTATAATAAATACGGAT-GTTGCGG 15250 Query 68747 -CAAGCAGCGTAGGGATCATCAGGACGCCGAACC 68779 ||| || ||||| ||||||| ||||| |||| Sbjct 15251 TCAATAAG-GTAGGAATCATCAAAACGCCAAACC 15283 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 67840 GCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAAA 67899 || || ||||||||||||||||| | || ||||| |||||||||||||||||||| | Sbjct 14461 GCTGCTAGGTCGAGAGGGAAGTTAGGAGCATTACGTTCATGCATAACTTCCATACCAAGG 14520 Query 67900 CCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGATA 67959 || |||||| | || || ||||| ||| | || ||| |||||||| | | Sbjct 14521 TTAGTGCGGTTAATAATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACA 14580 Query 67960 GACTGGTTGAAGTTGA 67975 || |||||||| |||| Sbjct 14581 GATTGGTTGAAATTGA 14596 >seq8546 Length=31398 Score = 250 bits (276), Expect = 3e-61 Identities = 323/444 (73%), Gaps = 4/444 (1%) Strand=Plus/Plus Query 67839 AGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAA 67898 |||||| ||||| ||| ||||||| || || ||||| |||||||||||||||||||| | Sbjct 12765 AGCAGCTAGGTCTAGATGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 12824 Query 67899 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGAT 67958 ||||||||| | || || ||||| || | || ||| |||||||| | Sbjct 12825 GTTAGCGCGGTTAATAATATCGGCCCAA-TA---ATTACACGACCTTGACTATCAACTAC 12880 Query 67959 AGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGT 68018 ||| |||||||| ||||| || || ||| | |||||||| || |||| ||| | | ||| Sbjct 12881 AGATTGGTTGAAATTGAAGCCGTTTAGGATAAATGCCATAGTACTAATACCTAAAGTAGT 12940 Query 68019 GAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTT 68078 ||||| ||||| || |||||||| ||| | | |||||| || | ||| | || | ||| Sbjct 12941 AAACCATATACCTACTACAGGCCAAGCAACTAAGAAGAAATGTAAAGAATGAGAATCGTT 13000 Query 68079 GAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTA 68138 ||| ||||| |||||||| | || || || || ||||| ||||| ||||| || | Sbjct 13001 GAAACTAGCATATTGGAAGATGAATCGGCCAAAATAACCATGAGCAGCTACAATATTCTT 13060 Query 68139 AGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTC 68198 ||| || || |||||||| || ||||||| | || ||| | | |||| |||||||| Sbjct 13061 AGTTTCCTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTTATTTTCTGTGGTTTC 13120 Query 68199 ACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAA 68258 | | || ||| || |||| ||||||||||| ||||||| | || || || || Sbjct 13121 CCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAACACTGAATATGGAGCCGCCGAA 13180 Query 68259 TACGCCAGCAACGCCGAGCATATG 68282 ||| ||||| ||||| | ||| || Sbjct 13181 TACACCAGCTACGCCTAACATGTG 13204 >seq29420 Length=7120 Score = 215 bits (238), Expect = 6e-51 Identities = 266/362 (73%), Gaps = 4/362 (1%) Strand=Plus/Minus Query 68353 AGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGAT 68412 |||||||| | ||||| || |||||||| | || |||| || ||| | | | Sbjct 3774 AGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGTAGTA 3715 Query 68413 GCTGCTGCAACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAG 68472 || || |||||||| | || || |||||| |||||||| |||||||| ||||| | Sbjct 3714 GCAGCCGCAACAGGAACTGAATACGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 3655 Query 68473 GAAAGTTCCCATTCACGTCCCATGTATGCAAAGATACCAATCAGGAAGTG--AAAGATTA 68530 ||||||||| ||||| |||||||| | | ||||| | |||||| ||| ||| Sbjct 3654 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGCAAAACATTT 3595 Query 68531 CGAGTTGGAAAGGACCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGG 68590 || | |||||||||||||||| ||||| ||||||| | ||| |||||||| || | Sbjct 3594 --AGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCATATTG 3537 Query 68591 GATAAAAGTGAAGACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGT 68650 |||||||||| | ||| || ||| ||| | |||| || ||||||| || || |||| Sbjct 3536 GATAAAAGTGCAAACCTATAGCAGCAGAAGTCGGAATAATGTCACCAGAGATAATATTGT 3477 Query 68651 TACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAG 68710 | || | ||||| || |||| ||||||||||||||||||||| || || || || |||| Sbjct 3476 TTCCGTGAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGAG 3417 Query 68711 CA 68712 || Sbjct 3416 CA 3415 >seq59 Length=339703 Score = 201 bits (222), Expect = 1e-46 Identities = 200/259 (77%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 68116 CCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTC 68175 ||||| | ||| ||||| || ||||||||||| |||||||| ||| ||||||| | || Sbjct 52565 CCATGAGTAGCTACAATATTATAAGTCTCTTCCTCTTGACCAAACCTGTAACCTTCATTA 52506 Query 68176 TGGGACTCAGTTTCAGTGGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATT 68235 || ||| |||| |||||||| | || || || || |||| ||||||||||| Sbjct 52505 GTAGATTCATTTTCTGTGGTTTCCCTAATCAAACTCGAGGTTACCAAAGAACCATGCATA 52446 Query 68236 GCACTGAACAGAGATCCACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATC 68295 ||||||| || || || || ||||| ||||| |||| | ||| || || |||||||| Sbjct 52445 ACACTGAATAGGGAGCCGCCGAATACACCAGCTACGCTTAACATGTGAAATGGGTGCATA 52386 Query 68296 AGGATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGA 68355 |||||||||||||| || ||||| || | |||| |||||||||||||||||| || ||| Sbjct 52385 AGGATGTTGTGCTCAGCATGGAATACAATCATGAAGTTGAAAGTACCAGAAACTCCTAGA 52326 Query 68356 GGCATTGCGTCAGAGAACG 68374 ||||| | ||||| |||| Sbjct 52325 GGCATACCATCAGAAAACG 52307 >seq25216 Length=8180 Score = 196 bits (216), Expect = 5e-45 Identities = 195/253 (77%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 68212 GAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAACG 68271 || || |||| ||||||||||| |||||||| || || || || ||||| ||| | ||| Sbjct 7003 GAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCATCTACG 7062 Query 68272 CCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATGTAG 68331 || | ||| || || |||||||| |||||||||||||| | ||||| || | |||| || Sbjct 7063 CCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGACTGGAATACAATCATGAAG 7122 Query 68332 TTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGA 68391 ||||||||||||||||| || |||||||| | ||||| || |||||||| | || Sbjct 7123 TTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGG 7182 Query 68392 TAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAGATCCAA 68451 |||| || ||| || || | || || |||||||| || || || |||| | |||||| Sbjct 7183 TAGATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCTGAATACGCAATAGCAATCCAA 7242 Query 68452 GGACGCATACCAA 68464 || |||||||||| Sbjct 7243 GGGCGCATACCAA 7255 >seq8085 Length=24635 Score = 86.0 bits (94), Expect = 7e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 68577 TGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGGAACAACAGCACC 68636 |||| |||| || |||||||| || | ||| || ||| ||| | |||| || | ||| Sbjct 19805 TGCTACCCACATTGGATAAAATTGCAAACCTATAGCAGCAGAAGTCGGAATAATGGAACC 19864 Query 68637 AGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGAT 68696 ||| | || ||||| || || ||||| || |||| |||||||||||| |||||||| || Sbjct 19865 AGAGAAAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGGATACCATCAAT 19924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569282839336080