Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq9434 140 6e-28 seq87 100 5e-16 >seq9434 Length=50679 Score = 140 bits (154), Expect = 6e-28 Identities = 173/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | || ||||| |||||||| | ||||| ||| || ||||| Sbjct 44930 ATTTGCATCCCACCACGCAGGCGAAGGACCAGATGAAGTGTAGACTCCTTCTGGATATTG 44989 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | || || | ||| || | ||| || |||||||| || | ||| || || Sbjct 44990 TAGTCAGCTAGTGTACGCCCATCTTCGAGTTGCTTCCCGGCAAAGATGAGTCTTTGCTGG 45049 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || |||||||||||||| ||||| | || | ||| |||||| || ||| Sbjct 45050 TCAGGTGGGATACCTTCTTTATCTTGGATTTTTGCCTTGACATTGTCAATAGTGTCTGAA 45109 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||| || || |||||||| ||||| || || || ||||| ||||| || |||||| Sbjct 45110 CTCTCGACCTCAAGAGTTATGGTTTTCCCAGTCAGGGTTTTAACAAAAATCTGCATT 45166 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | ||||| |||| || | || | |||||| |||||| || || Sbjct 45848 ATACCACCTCTGAGACGAAGCACCAAGTGGAGGGTGGACTCTTTCTGAATATTGTAATCA 45907 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| |||| ||| ||||||||||| || | ||| ||||| ||||| Sbjct 45908 GCAAGGGTCCTTCCATCCTCTAGTTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCAGGG 45967 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || || ||||| || || | ||||| || ||| || || || ||| Sbjct 45968 GGAATTCCCTCCTTGTCTTGGATCTTAGCTTTTACGTTGTCAATTGTGTCAGAGCTTTCA 46027 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || |||||||| ||||| || || || ||||| Sbjct 46028 ACCTCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 46077 Score = 84.2 bits (92), Expect = 4e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 193127 TTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATA 193186 ||| | |||||||| | ||||| || || || | || | ||| || ||| ||||| Sbjct 44704 TTAAAAACCACCTCGGAGACGAAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATA 44763 Query 193187 GTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC 193246 || | || || | ||| || | ||| ||||| ||||| || | | ||| || || Sbjct 44764 ATCAGCTAGAGTGCGGCCATCCTCCAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTC 44823 Query 193247 AGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGA 193306 |||||| || ||||| || || || ||||| | || | ||| || ||||| || Sbjct 44824 AGGAGGAATCCCTTCCTTGTCCTGAATTTTAGCCTTAACATTGTCGATTGTATCAGAGCT 44883 Query 193307 CTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || | || || ||||| || || | || || |||||||||||||| Sbjct 44884 TTCAACCTCCAAGGTGATGGTTTTTCCAGTCAATGTCTTCACAAATATTTGCAT 44937 >seq87 Length=177581 Score = 100 bits (110), Expect = 5e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || ||||| || | ||| | ||| || ||||||||||| | || ||||| Sbjct 55591 CGGAGAACCAGGTGGAGTGTGGACTCCTTCTGGATATTATAGTCAGCTAGGGTTCTTCCG 55650 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| ||||||||||| || | || || ||||| ||||| || || || ||| Sbjct 55651 TCTTCAAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGATCTGGAGGAATCCCCTCCTTA 55710 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||| | || | ||| || || || || || || || ||||| || Sbjct 55711 TCTTGAATTTTAGCCTTAACATTGTCGATTGTGTCAGAGCTTTCGACCTCAAGAGTGATG 55770 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||||||| || ||||| || || || ||||| Sbjct 55771 GTCTTACCTGTAAGTGTTTTCACGAAGATCTGCAT 55805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895295641906080