Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq9434 109 8e-19 seq10588 105 1e-17 seq270 96.9 5e-15 seq4197 86.0 9e-12 >seq9434 Length=50679 Score = 109 bits (120), Expect = 8e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | ||||| ||||||||||| | ||||| || || Sbjct 45621 ATGCAAATTTTTGTCAAGACCCTTACTGGGAAAACTATTACTCTGGAAGTGGAGAGCTCA 45562 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| ||||| || ||||| || || || || ||||| || Sbjct 45561 GACACCATTGACAACGTGAAGGCAAAAATCCAGGATAAGGAGGGAATCCCACCAGACCAG 45502 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||| || ||||| ||||||||| || ||| | ||||||||| Sbjct 45501 CAGAGGTTGATCTTTGCTGGGAAGCAACTCGAAGATGGAAGGACTCTTGCAGATTATA-- 45444 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 | ||||||| ||| | || |||||||| || Sbjct 45443 ACATCCAAAAGGAGTCAACACTTCATTTGGT 45413 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| ||||||| ||||||| ||||| || || | || ||||| ||| Sbjct 45166 AATGCAGATTTTTGTTAAAACCCTGACTGGGAAAACCATAACTCTTGAGGTCGAGAGTTC 45107 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | |||| || || || ||||| |||||||||||||| || || || || || Sbjct 45106 AGACACTATTGACAATGTCAAGGCAAAAATCCAAGATAAAGAAGGTATCCCACCTGACCA 45047 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||| | || | |||||| ||||| ||||||||| | || || | || || || Sbjct 45046 GCAAAGACTCATCTTTGCCGGGAAGCAACTCGAAGATGGGCGTACACTAGCTGACTACAA 44987 Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026 ||| || ||| | || |||||| Sbjct 44986 TATCCAGAAGGAGTCTACACTTCAT 44962 Score = 100 bits (110), Expect = 4e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || ||||||||||||||||| || || || || || ||| ||| Sbjct 44937 ATGCAAATATTTGTGAAGACATTGACTGGAAAAACCATCACCTTGGAGGTTGAAAGCTCT 44878 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || || |||||| || || || ||||| || ||||| || || Sbjct 44877 GATACAATCGACAATGTTAAGGCTAAAATTCAGGACAAGGAAGGGATTCCTCCTGACCAG 44818 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | |||| | ||| || ||||| || || ||| | | ||| || | |||||||| Sbjct 44817 CAGCGTCTGATCTTTGCTGGAAAGCAACTGGAGGATGGCCGCACTCTAGCTGATTATAAC 44758 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || || ||| | || ||||| Sbjct 44757 ATTCAGAAGGAGTCCACCCTTCA 44735 >seq10588 Length=20159 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| ||||||||||| || || || || || || || || ||| Sbjct 1251 ATGCAGATCTTTGTTAAGACATTGACTGGCAAGACCATCACCTTGGAGGTTGAGAGCTCT 1192 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || ||||| ||| || || || || ||||| || |||||||| ||| Sbjct 1191 GATACTATTGATAATGTGAAGGCTAAGATCCAGGACAAGGAAGGGATTCCTCCAGACCAA 1132 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||| || |||||||| || ||| | | ||| | | ||||| ||| Sbjct 1131 CAGCGTTTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACTCTTGCTGATTACAAT 1072 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || || ||| | || ||||| Sbjct 1071 ATTCAGAAGGAGTCTACCCTTCA 1049 >seq270 Length=105985 Score = 96.9 bits (106), Expect = 5e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||| ||||||||| |||||| ||||| ||||||||||| | ||||| || || Sbjct 91789 AAACAAGCAAAATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAGGTC 91848 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGC-GAAACTACTAGAAAA 18273 || || ||||| | ||| | |||||||||||| |||| || || ||| || | || || Sbjct 91849 AATCCTGGCATCAGACCGCGTTTTTTTAGCCAGAATA-CGGCGCAGAAGCTTCCGGAGAA 91907 Query 18274 GAATATACCCTCAACGCACGCGAACGC 18300 ||| || || || ||||| ||||| || Sbjct 91908 GAAGATGCCTTCCACGCAAGCGAAAGC 91934 >seq4197 Length=36674 Score = 86.0 bits (94), Expect = 9e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 18157 ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAA 18216 ||| || ||||| ||| || ||||| || | ||| || || ||||| || |||| Sbjct 23419 ACAAGCGAAATCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAG 23478 Query 18217 CCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAA 18276 || ||||| | |||| ||||||||||||||||||| ||| || | ||| ||||| Sbjct 23479 TCCAGGCATCAGTCCTCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAA 23538 Query 18277 TATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAA 18318 ||||| |||||||| || || || | || | ||||| || Sbjct 23539 GATACCTTCAACGCAGGCAAAAGCAACTATGCGCTCAGCGAA 23580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 728326135050400