Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq9434 109 8e-19
seq10588 105 1e-17
seq270 96.9 5e-15
seq4197 86.0 9e-12
>seq9434
Length=50679
Score = 109 bits (120), Expect = 8e-19
Identities = 152/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | || || | ||||| ||||||||||| | ||||| || ||
Sbjct 45621 ATGCAAATTTTTGTCAAGACCCTTACTGGGAAAACTATTACTCTGGAAGTGGAGAGCTCA 45562
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| |||||||| ||||| || ||||| || || || || ||||| ||
Sbjct 45561 GACACCATTGACAACGTGAAGGCAAAAATCCAGGATAAGGAGGGAATCCCACCAGACCAG 45502
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || ||||| | ||| || ||||| ||||||||| || ||| | |||||||||
Sbjct 45501 CAGAGGTTGATCTTTGCTGGGAAGCAACTCGAAGATGGAAGGACTCTTGCAGATTATA-- 45444
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031
| ||||||| ||| | || |||||||| ||
Sbjct 45443 ACATCCAAAAGGAGTCAACACTTCATTTGGT 45413
Score = 104 bits (114), Expect = 3e-17
Identities = 146/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || ||| ||||||| ||||||| ||||| || || | || ||||| |||
Sbjct 45166 AATGCAGATTTTTGTTAAAACCCTGACTGGGAAAACCATAACTCTTGAGGTCGAGAGTTC 45107
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | |||| || || || ||||| |||||||||||||| || || || || ||
Sbjct 45106 AGACACTATTGACAATGTCAAGGCAAAAATCCAAGATAAAGAAGGTATCCCACCTGACCA 45047
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|||||| | || | |||||| ||||| ||||||||| | || || | || || ||
Sbjct 45046 GCAAAGACTCATCTTTGCCGGGAAGCAACTCGAAGATGGGCGTACACTAGCTGACTACAA 44987
Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026
||| || ||| | || ||||||
Sbjct 44986 TATCCAGAAGGAGTCTACACTTCAT 44962
Score = 100 bits (110), Expect = 4e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||||||| | || ||||||||||||||||| || || || || || ||| |||
Sbjct 44937 ATGCAAATATTTGTGAAGACATTGACTGGAAAAACCATCACCTTGGAGGTTGAAAGCTCT 44878
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| || || || || |||||| || || || ||||| || ||||| || ||
Sbjct 44877 GATACAATCGACAATGTTAAGGCTAAAATTCAGGACAAGGAAGGGATTCCTCCTGACCAG 44818
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| | |||| | ||| || ||||| || || ||| | | ||| || | ||||||||
Sbjct 44817 CAGCGTCTGATCTTTGCTGGAAAGCAACTGGAGGATGGCCGCACTCTAGCTGATTATAAC 44758
Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025
|| || ||| | || |||||
Sbjct 44757 ATTCAGAAGGAGTCCACCCTTCA 44735
>seq10588
Length=20159
Score = 105 bits (116), Expect = 1e-17
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| |||| ||||||||||| || || || || || || || || |||
Sbjct 1251 ATGCAGATCTTTGTTAAGACATTGACTGGCAAGACCATCACCTTGGAGGTTGAGAGCTCT 1192
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| |||| || ||||| ||| || || || || ||||| || |||||||| |||
Sbjct 1191 GATACTATTGATAATGTGAAGGCTAAGATCCAGGACAAGGAAGGGATTCCTCCAGACCAA 1132
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| | ||||| | ||| || |||||||| || ||| | | ||| | | ||||| |||
Sbjct 1131 CAGCGTTTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACTCTTGCTGATTACAAT 1072
Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025
|| || ||| | || |||||
Sbjct 1071 ATTCAGAAGGAGTCTACCCTTCA 1049
>seq270
Length=105985
Score = 96.9 bits (106), Expect = 5e-15
Identities = 111/147 (76%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214
||||| ||||||||| |||||| ||||| ||||||||||| | ||||| || ||
Sbjct 91789 AAACAAGCAAAATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAGGTC 91848
Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGC-GAAACTACTAGAAAA 18273
|| || ||||| | ||| | |||||||||||| |||| || || ||| || | || ||
Sbjct 91849 AATCCTGGCATCAGACCGCGTTTTTTTAGCCAGAATA-CGGCGCAGAAGCTTCCGGAGAA 91907
Query 18274 GAATATACCCTCAACGCACGCGAACGC 18300
||| || || || ||||| ||||| ||
Sbjct 91908 GAAGATGCCTTCCACGCAAGCGAAAGC 91934
>seq4197
Length=36674
Score = 86.0 bits (94), Expect = 9e-12
Identities = 116/162 (72%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 18157 ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAA 18216
||| || ||||| ||| || ||||| || | ||| || || ||||| || ||||
Sbjct 23419 ACAAGCGAAATCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAG 23478
Query 18217 CCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAA 18276
|| ||||| | |||| ||||||||||||||||||| ||| || | ||| |||||
Sbjct 23479 TCCAGGCATCAGTCCTCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAA 23538
Query 18277 TATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAA 18318
||||| |||||||| || || || | || | ||||| ||
Sbjct 23539 GATACCTTCAACGCAGGCAAAAGCAACTATGCGCTCAGCGAA 23580
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 728326135050400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |