Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq9434 129 1e-24
seq87 123 5e-23
seq22012 96.9 7e-15
seq10588 95.1 2e-14
seq35801 87.8 4e-12
seq36 87.8 4e-12
>seq9434
Length=50679
Score = 129 bits (142), Expect = 1e-24
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | || || | || | ||| | |||| ||| || |||||| || |||
Sbjct 44936 ATCCCACCACGCAGGCGAAGGACCAGATGAAGTGTAGACTCCTTCTGGATATTGTAGTCA 44995
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| || ||| || |||| || | ||| || || |||||||| | ||| || || ||||||
Sbjct 44996 GCTAGTGTACGCCCATCTTCGAGTTGCTTCCCGGCAAAGATGAGTCTTTGCTGGTCAGGT 45055
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || |||||||||||||| ||||| || ||||| |||| ||||| ||
Sbjct 45056 GGGATACCTTCTTTATCTTGGATTTTTGCCTTGACATTGTCAATAGTGTCTGAACTCTCG 45115
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| || ||||| |||||||| ||||| | ||||||| ||| |||||||||
Sbjct 45116 ACCTCAAGAGTTATGGTTTTCCCAGTCAGGGTTTTAACAAAAATCTGCATT 45166
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | |||||| | || ||||| | || | ||| || ||| ||||||||
Sbjct 45392 ATACCACCACGAAGACGAAGGACCAAATGAAGTGTTGACTCCTTTTGGATGTTATAATCT 45451
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | || | | |||| || | ||| || ||||||||||| || ||||| || || |||
Sbjct 45452 GCAAGAGTCCTTCCATCTTCGAGTTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGT 45511
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| ||||| || ||||| || ||||| || || || || | ||||| ||
Sbjct 45512 GGGATTCCCTCCTTATCCTGGATTTTTGCCTTCACGTTGTCAATGGTGTCTGAGCTCTCC 45571
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| |||||||| ||||| ||||| | || || | ||| || |||||
Sbjct 45572 ACTTCCAGAGTAATAGTTTTCCCAGTAAGGGTCTTGACAAAAATTTGCAT 45621
Score = 105 bits (116), Expect = 1e-17
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365
|| |||||||| ||||| | || | || | || | ||| || || ||||||||
Sbjct 44707 AAAACCACCTCGGAGACGAAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATC 44766
Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425
|| || || || |||| |||| ||| || ||||||||||| | | ||| || |||||
Sbjct 44767 AGCTAGAGTGCGGCCATCCTCCAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGG 44826
Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485
|| || ||||| || || || |||||| || ||||| || | ||| || |||
Sbjct 44827 AGGAATCCCTTCCTTGTCCTGAATTTTAGCCTTAACATTGTCGATTGTATCAGAGCTTTC 44886
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || | || |||||||| ||||| ||||| || | |||||| |||||
Sbjct 44887 AACCTCCAAGGTGATGGTTTTTCCAGTCAATGTCTTCACAAATATTTGCAT 44937
Score = 104 bits (114), Expect = 5e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||||||||| ||||| | || || || | || | |||||| ||||| ||||||
Sbjct 45848 ATACCACCTCTGAGACGAAGCACCAAGTGGAGGGTGGACTCTTTCTGAATATTGTAATCA 45907
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | || | | |||| || | ||| || || |||||||| | ||| ||||| |||||
Sbjct 45908 GCAAGGGTCCTTCCATCCTCTAGTTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCAGGG 45967
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| ||||| || || ||||| || ||| |||||| || || | || || |||
Sbjct 45968 GGAATTCCCTCCTTGTCTTGGATCTTAGCTTTTACGTTGTCAATTGTGTCAGAGCTTTCA 46027
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || || || || || || |||| ||||| | || ||||||||
Sbjct 46028 ACCTCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 46077
Score = 100 bits (110), Expect = 6e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | |||||| | || || || | || | || || ||| ||||||||
Sbjct 45620 ATACCACCACGAAGACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTATAATCT 45679
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | || | | |||| || | ||| || || |||||||| || ||||| ||||| ||
Sbjct 45680 GCAAGGGTCCTTCCATCTTCAAGTTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGG 45739
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| ||||| || || ||||| || ||| ||| ||||| || | ||||| ||
Sbjct 45740 GGAATTCCCTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATTGTGTCTGAGCTCTCG 45799
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| || || || || || ||||||| || || | |||||||||||
Sbjct 45800 ACTTCAAGTGTGATAGTCTTGCCAGTTAGGGTCTTTACGAATATCTGCAT 45849
>seq87
Length=177581
Score = 123 bits (136), Expect = 5e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | |||||| | || ||||| | || | ||||| ||| |||||||||
Sbjct 55120 ATACCACCACGAAGACGGAGCACCAAATGCAGGGTTGATTCTTTCTGGATGTTATAATCA 55179
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | || | | |||| || | ||| || ||||||||||| |||||||| || || ||
Sbjct 55180 GCAAGGGTCCTTCCATCTTCGAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGA 55239
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| ||||| || |||||||| || ||| ||| || || || | || || ||
Sbjct 55240 GGAATTCCCTCCTTATCTTGAATCTTAGCTTTGACGTTGTCAATGGTGTCAGAGCTCTCA 55299
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
||||| |||||||| || || ||||| || || || | ||| |||||||||
Sbjct 55300 ACTTCAAGAGTAATAGTCTTGCCAGTCAAAGTCTTCACAAAGATCTGCATT 55350
Score = 100 bits (110), Expect = 6e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| || ||||| | || || || | || | || || ||||||||||||
Sbjct 55348 ATTCCACCCCTCAGACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATATTATAATCT 55407
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | ||| || |||| |||||||| || || |||||||| | |||||||| |||||
Sbjct 55408 GCAAGTGTGCGACCATCTTCCAATTGCTTCCCGGCAAAGATGAGCCTCTGTTGGTCAGGG 55467
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || || ||||| ||| ||||| || || | || || ||
Sbjct 55468 GGAATGCCTTCCTTGTCCTGTATCTTAGCCTTTACGTTGTCAATTGTGTCGGAGCTCTCA 55527
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| || || || || || ||||||| || || | ||| || |||||
Sbjct 55528 ACTTCGAGGGTGATCGTCTTGCCAGTTAGGGTCTTGACAAAGATTTGCAT 55577
>seq22012
Length=9549
Score = 96.9 bits (106), Expect = 7e-15
Identities = 131/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
|| || ||||||| ||||| ||| |||| || | || |||||||||||||| || |||
Sbjct 5886 ATGTTGTAATCAGCCAATGTCCGTCCATCCTCGAGCTGCTTACCAGCAAAGATCAACCTC 5945
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
|| || || || || || || || || || || || || || |||||| ||| |
Sbjct 5946 TGCTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTCGCCTTGACATTATCTATGGTG 6005
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
|| || ||| || || || || || || || || ||||| || |||| |||||||||
Sbjct 6006 TCCGAGCTTTCAACCTCGAGGGTGATAGTCTTCCCTGTTAAAGTCTTAACGAATATCTGC 6065
Query 192535 ATT 192537
|||
Sbjct 6066 ATT 6068
>seq10588
Length=20159
Score = 95.1 bits (104), Expect = 2e-14
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
||||| ||||||| | || || |||| || | || || ||||||||||| || | |
Sbjct 1070 ATATTGTAATCAGCAAGAGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAAACGC 1129
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
||||| || || || || ||||| || || || || ||| || |||||| |||| |
Sbjct 1130 TGTTGGTCTGGAGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTCACATTATCAATAGTA 1189
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
|| || || || || | || ||||| || ||||| ||||| |||| ||| ||||||
Sbjct 1190 TCAGAGCTCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAATGTCTTAACAAAGATCTGC 1249
Query 192535 AT 192536
||
Sbjct 1250 AT 1251
>seq35801
Length=5147
Score = 87.8 bits (96), Expect = 4e-12
Identities = 129/183 (70%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
|| || ||||||| ||||| ||| |||| || | || || ||||||||||| || |||
Sbjct 311 ATGTTGTAATCAGCCAATGTCCGTCCATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTC 252
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
|| || || || || || || || || || || || || || |||||| ||| |
Sbjct 251 TGCTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTCGCCTTGACATTATCTATGGTG 192
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
|| || ||| || || || || ||||| || || || || || || | |||||||||
Sbjct 191 TCCGAGCTTTCAACCTCGAGGGTGATGGTCTTCCCTGTCAAAGTCTTGACGAATATCTGC 132
Query 192535 ATT 192537
|||
Sbjct 131 ATT 129
>seq36
Length=331580
Score = 87.8 bits (96), Expect = 4e-12
Identities = 114/157 (73%), Gaps = 3/157 (2%)
Strand=Plus/Minus
Query 192293 tttttAGTTTAATAATA---CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTT 192349
|||| | |||||| || ||||||||||| || || || | || | || | ||||
Sbjct 257010 TTTTCACTTTAATCATCGTTCCACCTCTAAGCCGCAACACGAGGTGAAGGGTTGATTCTT 256951
Query 192350 TAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTA 192409
| ||| || ||||||| | || || |||| |||||||||||||||||||| || |
Sbjct 256950 TCTGGATGTTGTAATCAGCAAGGGTGCGGCCATCCTCCAATTGTTTACCAGCAAATATCA 256891
Query 192410 ATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446
||||| |||||||| || || ||||| || || ||
Sbjct 256890 GCCTCTGCTGATCAGGAGGAATACCTTCCTTGTCCTG 256854
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 979591024941900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |