Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq9434 129 1e-24 seq87 123 5e-23 seq22012 96.9 7e-15 seq10588 95.1 2e-14 seq35801 87.8 4e-12 seq36 87.8 4e-12 >seq9434 Length=50679 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | || || | || | ||| | |||| ||| || |||||| || ||| Sbjct 44936 ATCCCACCACGCAGGCGAAGGACCAGATGAAGTGTAGACTCCTTCTGGATATTGTAGTCA 44995 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || ||| || |||| || | ||| || || |||||||| | ||| || || |||||| Sbjct 44996 GCTAGTGTACGCCCATCTTCGAGTTGCTTCCCGGCAAAGATGAGTCTTTGCTGGTCAGGT 45055 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| ||||| || ||||| |||| ||||| || Sbjct 45056 GGGATACCTTCTTTATCTTGGATTTTTGCCTTGACATTGTCAATAGTGTCTGAACTCTCG 45115 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || ||||| |||||||| ||||| | ||||||| ||| ||||||||| Sbjct 45116 ACCTCAAGAGTTATGGTTTTCCCAGTCAGGGTTTTAACAAAAATCTGCATT 45166 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | || ||||| | || | ||| || ||| |||||||| Sbjct 45392 ATACCACCACGAAGACGAAGGACCAAATGAAGTGTTGACTCCTTTTGGATGTTATAATCT 45451 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | | |||| || | ||| || ||||||||||| || ||||| || || ||| Sbjct 45452 GCAAGAGTCCTTCCATCTTCGAGTTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGT 45511 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || ||||| || ||||| || || || || | ||||| || Sbjct 45512 GGGATTCCCTCCTTATCCTGGATTTTTGCCTTCACGTTGTCAATGGTGTCTGAGCTCTCC 45571 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||||| ||||| ||||| | || || | ||| || ||||| Sbjct 45572 ACTTCCAGAGTAATAGTTTTCCCAGTAAGGGTCTTGACAAAAATTTGCAT 45621 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 || |||||||| ||||| | || | || | || | ||| || || |||||||| Sbjct 44707 AAAACCACCTCGGAGACGAAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATC 44766 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || || || || |||| |||| ||| || ||||||||||| | | ||| || ||||| Sbjct 44767 AGCTAGAGTGCGGCCATCCTCCAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGG 44826 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| || || || |||||| || ||||| || | ||| || ||| Sbjct 44827 AGGAATCCCTTCCTTGTCCTGAATTTTAGCCTTAACATTGTCGATTGTATCAGAGCTTTC 44886 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || |||||||| ||||| ||||| || | |||||| ||||| Sbjct 44887 AACCTCCAAGGTGATGGTTTTTCCAGTCAATGTCTTCACAAATATTTGCAT 44937 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || || || | || | |||||| ||||| |||||| Sbjct 45848 ATACCACCTCTGAGACGAAGCACCAAGTGGAGGGTGGACTCTTTCTGAATATTGTAATCA 45907 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | | |||| || | ||| || || |||||||| | ||| ||||| ||||| Sbjct 45908 GCAAGGGTCCTTCCATCCTCTAGTTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCAGGG 45967 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || ||||| || ||| |||||| || || | || || ||| Sbjct 45968 GGAATTCCCTCCTTGTCTTGGATCTTAGCTTTTACGTTGTCAATTGTGTCAGAGCTTTCA 46027 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || || |||| ||||| | || |||||||| Sbjct 46028 ACCTCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 46077 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | || || || | || | || || ||| |||||||| Sbjct 45620 ATACCACCACGAAGACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTATAATCT 45679 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | | |||| || | ||| || || |||||||| || ||||| ||||| || Sbjct 45680 GCAAGGGTCCTTCCATCTTCAAGTTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGG 45739 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || ||||| || ||| ||| ||||| || | ||||| || Sbjct 45740 GGAATTCCCTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATTGTGTCTGAGCTCTCG 45799 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || || || ||||||| || || | ||||||||||| Sbjct 45800 ACTTCAAGTGTGATAGTCTTGCCAGTTAGGGTCTTTACGAATATCTGCAT 45849 >seq87 Length=177581 Score = 123 bits (136), Expect = 5e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | || ||||| | || | ||||| ||| ||||||||| Sbjct 55120 ATACCACCACGAAGACGGAGCACCAAATGCAGGGTTGATTCTTTCTGGATGTTATAATCA 55179 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | | |||| || | ||| || ||||||||||| |||||||| || || || Sbjct 55180 GCAAGGGTCCTTCCATCTTCGAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGA 55239 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || |||||||| || ||| ||| || || || | || || || Sbjct 55240 GGAATTCCCTCCTTATCTTGAATCTTAGCTTTGACGTTGTCAATGGTGTCAGAGCTCTCA 55299 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| |||||||| || || ||||| || || || | ||| ||||||||| Sbjct 55300 ACTTCAAGAGTAATAGTCTTGCCAGTCAAAGTCTTCACAAAGATCTGCATT 55350 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || ||||| | || || || | || | || || |||||||||||| Sbjct 55348 ATTCCACCCCTCAGACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATATTATAATCT 55407 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| || |||| |||||||| || || |||||||| | |||||||| ||||| Sbjct 55408 GCAAGTGTGCGACCATCTTCCAATTGCTTCCCGGCAAAGATGAGCCTCTGTTGGTCAGGG 55467 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || ||||| ||| ||||| || || | || || || Sbjct 55468 GGAATGCCTTCCTTGTCCTGTATCTTAGCCTTTACGTTGTCAATTGTGTCGGAGCTCTCA 55527 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || || || ||||||| || || | ||| || ||||| Sbjct 55528 ACTTCGAGGGTGATCGTCTTGCCAGTTAGGGTCTTGACAAAGATTTGCAT 55577 >seq22012 Length=9549 Score = 96.9 bits (106), Expect = 7e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || ||||||| ||||| ||| |||| || | || |||||||||||||| || ||| Sbjct 5886 ATGTTGTAATCAGCCAATGTCCGTCCATCCTCGAGCTGCTTACCAGCAAAGATCAACCTC 5945 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || || || || || || || || || || || || |||||| ||| | Sbjct 5946 TGCTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTCGCCTTGACATTATCTATGGTG 6005 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || ||| || || || || || || || || ||||| || |||| ||||||||| Sbjct 6006 TCCGAGCTTTCAACCTCGAGGGTGATAGTCTTCCCTGTTAAAGTCTTAACGAATATCTGC 6065 Query 192535 ATT 192537 ||| Sbjct 6066 ATT 6068 >seq10588 Length=20159 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| ||||||| | || || |||| || | || || ||||||||||| || | | Sbjct 1070 ATATTGTAATCAGCAAGAGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAAACGC 1129 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 ||||| || || || || ||||| || || || || ||| || |||||| |||| | Sbjct 1130 TGTTGGTCTGGAGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTCACATTATCAATAGTA 1189 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || || || || | || ||||| || ||||| ||||| |||| ||| |||||| Sbjct 1190 TCAGAGCTCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAATGTCTTAACAAAGATCTGC 1249 Query 192535 AT 192536 || Sbjct 1250 AT 1251 >seq35801 Length=5147 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || ||||||| ||||| ||| |||| || | || || ||||||||||| || ||| Sbjct 311 ATGTTGTAATCAGCCAATGTCCGTCCATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTC 252 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || || || || || || || || || || || || |||||| ||| | Sbjct 251 TGCTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTCGCCTTGACATTATCTATGGTG 192 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || ||| || || || || ||||| || || || || || || | ||||||||| Sbjct 191 TCCGAGCTTTCAACCTCGAGGGTGATGGTCTTCCCTGTCAAAGTCTTGACGAATATCTGC 132 Query 192535 ATT 192537 ||| Sbjct 131 ATT 129 >seq36 Length=331580 Score = 87.8 bits (96), Expect = 4e-12 Identities = 114/157 (73%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 192293 tttttAGTTTAATAATA---CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTT 192349 |||| | |||||| || ||||||||||| || || || | || | || | |||| Sbjct 257010 TTTTCACTTTAATCATCGTTCCACCTCTAAGCCGCAACACGAGGTGAAGGGTTGATTCTT 256951 Query 192350 TAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTA 192409 | ||| || ||||||| | || || |||| |||||||||||||||||||| || | Sbjct 256950 TCTGGATGTTGTAATCAGCAAGGGTGCGGCCATCCTCCAATTGTTTACCAGCAAATATCA 256891 Query 192410 ATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 ||||| |||||||| || || ||||| || || || Sbjct 256890 GCCTCTGCTGATCAGGAGGAATACCTTCCTTGTCCTG 256854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 979591024941900