Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq9434 105 1e-17
seq22012 89.7 9e-13
seq87 86.0 1e-11
>seq9434
Length=50679
Score = 105 bits (116), Expect = 1e-17
Identities = 117/156 (75%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974
|| || | ||| || || ||||| || | ||| || ||||||||||| || |||||||||
Sbjct 45011 TCTTCGAGTTGCTTCCCGGCAAAGATGAGTCTTTGCTGGTCAGGTGGGATACCTTCTTTA 45070
Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034
||||| ||||| || ||||| ||||| ||||| || || || ||||| |||
Sbjct 45071 TCTTGGATTTTTGCCTTGACATTGTCAATAGTGTCTGAACTCTCGACCTCAAGAGTTATG 45130
Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| ||||| | ||||||| || |||||||||
Sbjct 45131 GTTTTCCCAGTCAGGGTTTTAACAAAAATCTGCATT 45166
Score = 104 bits (114), Expect = 4e-17
Identities = 163/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||||||||| || || | || || || | || | |||||| |||||| |||||
Sbjct 45848 ATACCACCTCTGAGACGAAGCACCAAGTGGAGGGTGGACTCTTTCTGAATATTGTAATCA 45907
Query 171900 GATAAAGATCGTT-CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958
| || | || || | || || | ||| || || ||||| || | ||| |||||||||||
Sbjct 45908 G-CAAGGGTCCTTCCATCCTCTAGTTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCAGG 45966
Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018
|| ||||| || || ||||| || ||| |||||| || || || || || |||
Sbjct 45967 GGGAATTCCCTCCTTGTCTTGGATCTTAGCTTTTACGTTGTCAATTGTGTCAGAGCTTTC 46026
Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || || || || || || || |||| ||||| | ||| ||||||||
Sbjct 46027 AACCTCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 46077
Score = 89.7 bits (98), Expect = 9e-13
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | ||| || | || || || | || | || || || |||||||||
Sbjct 45620 ATACCACCACGAAGACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTATAATCT 45679
Query 171900 GATAAAGATCGTTCG-TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958
| || | || ||| || || | ||| || || ||||| || || ||||| || || ||
Sbjct 45680 GC-AAGGGTCCTTCCATCTTCAAGTTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGG 45738
Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018
|| ||||| || || ||||| || ||| ||| ||||| || || ||||| ||
Sbjct 45739 GGGAATTCCCTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATTGTGTCTGAGCTCTC 45798
Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| || || || || || ||||||| || || | ||||||||||||
Sbjct 45799 GACTTCAAGTGTGATAGTCTTGCCAGTTAGGGTCTTTACGAATATCTGCAT 45849
Score = 87.8 bits (96), Expect = 3e-12
Identities = 129/183 (70%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946
||| ||||| |||| ||| | | | | || || | || || ||||||||||| || ||
Sbjct 45211 AATGTTATAGTCTGCTAATGTCCTTCCATCTTCAAGCTGCTTCCCAGCAAAAATCAACCT 45270
Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006
||||||||| ||||| ||||| || ||||| || || || |||||||| || ||
Sbjct 45271 CTGTTGGTCTGGTGGAATTCCCTCCTTATCCTGAATCTTCGCCTTTACATTGTCAATGGT 45330
Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066
|| || || ||||| | ||| ||||| || || || | || || | || |||||
Sbjct 45331 GTCCGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCGGTCAGGGTCTTGACAAAAATCTG 45390
Query 172067 CAT 172069
|||
Sbjct 45391 CAT 45393
>seq22012
Length=9549
Score = 89.7 bits (98), Expect = 9e-13
Identities = 130/184 (71%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946
||| || ||||| | || | ||| | || || | || ||||||||||| || || ||
Sbjct 5885 AATGTTGTAATCAGCCAATGTCCGTCCATCCTCGAGCTGCTTACCAGCAAAGATCAACCT 5944
Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006
||| ||||| || || || || || || || || || || || |||||| ||| ||
Sbjct 5945 CTGCTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTCGCCTTGACATTATCTATGGT 6004
Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066
|| || ||| || || || || || || || || ||||| || |||| |||||||||
Sbjct 6005 GTCCGAGCTTTCAACCTCGAGGGTGATAGTCTTCCCTGTTAAAGTCTTAACGAATATCTG 6064
Query 172067 CATT 172070
||||
Sbjct 6065 CATT 6068
>seq87
Length=177581
Score = 86.0 bits (94), Expect = 1e-11
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947
||||||||||||| | | || | || |||||||| || || ||||| || | |||
Sbjct 55396 ATATTATAATCTGCAAGTGTGCGACCATCTTCCAATTGCTTCCCGGCAAAGATGAGCCTC 55455
Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007
||||||||||| || || ||||| || || ||||| ||| ||||| || || ||
Sbjct 55456 TGTTGGTCAGGGGGAATGCCTTCCTTGTCCTGTATCTTAGCCTTTACGTTGTCAATTGTG 55515
Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067
|| || || ||||| || || || || || ||||||| || || | || || |||
Sbjct 55516 TCGGAGCTCTCAACTTCGAGGGTGATCGTCTTGCCAGTTAGGGTCTTGACAAAGATTTGC 55575
Query 172068 AT 172069
||
Sbjct 55576 AT 55577
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 900750683965200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |