Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq9434 105 1e-17 seq22012 89.7 9e-13 seq87 86.0 1e-11 >seq9434 Length=50679 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | ||| || || ||||| || | ||| || ||||||||||| || ||||||||| Sbjct 45011 TCTTCGAGTTGCTTCCCGGCAAAGATGAGTCTTTGCTGGTCAGGTGGGATACCTTCTTTA 45070 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| ||||| || ||||| ||||| ||||| || || || ||||| ||| Sbjct 45071 TCTTGGATTTTTGCCTTGACATTGTCAATAGTGTCTGAACTCTCGACCTCAAGAGTTATG 45130 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| ||||| | ||||||| || ||||||||| Sbjct 45131 GTTTTCCCAGTCAGGGTTTTAACAAAAATCTGCATT 45166 Score = 104 bits (114), Expect = 4e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || || || | || | |||||| |||||| ||||| Sbjct 45848 ATACCACCTCTGAGACGAAGCACCAAGTGGAGGGTGGACTCTTTCTGAATATTGTAATCA 45907 Query 171900 GATAAAGATCGTT-CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | || | || || | || || | ||| || || ||||| || | ||| ||||||||||| Sbjct 45908 G-CAAGGGTCCTTCCATCCTCTAGTTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCAGG 45966 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || ||||| || || ||||| || ||| |||||| || || || || || ||| Sbjct 45967 GGGAATTCCCTCCTTGTCTTGGATCTTAGCTTTTACGTTGTCAATTGTGTCAGAGCTTTC 46026 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || || |||| ||||| | ||| |||||||| Sbjct 46027 AACCTCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 46077 Score = 89.7 bits (98), Expect = 9e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | || || || | || | || || || ||||||||| Sbjct 45620 ATACCACCACGAAGACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTATAATCT 45679 Query 171900 GATAAAGATCGTTCG-TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | || | || ||| || || | ||| || || ||||| || || ||||| || || || Sbjct 45680 GC-AAGGGTCCTTCCATCTTCAAGTTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGG 45738 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || ||||| || || ||||| || ||| ||| ||||| || || ||||| || Sbjct 45739 GGGAATTCCCTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATTGTGTCTGAGCTCTC 45798 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || || || || ||||||| || || | |||||||||||| Sbjct 45799 GACTTCAAGTGTGATAGTCTTGCCAGTTAGGGTCTTTACGAATATCTGCAT 45849 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| ||||| |||| ||| | | | | || || | || || ||||||||||| || || Sbjct 45211 AATGTTATAGTCTGCTAATGTCCTTCCATCTTCAAGCTGCTTCCCAGCAAAAATCAACCT 45270 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||||||| ||||| ||||| || ||||| || || || |||||||| || || Sbjct 45271 CTGTTGGTCTGGTGGAATTCCCTCCTTATCCTGAATCTTCGCCTTTACATTGTCAATGGT 45330 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || || ||||| | ||| ||||| || || || | || || | || ||||| Sbjct 45331 GTCCGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCGGTCAGGGTCTTGACAAAAATCTG 45390 Query 172067 CAT 172069 ||| Sbjct 45391 CAT 45393 >seq22012 Length=9549 Score = 89.7 bits (98), Expect = 9e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || ||||| | || | ||| | || || | || ||||||||||| || || || Sbjct 5885 AATGTTGTAATCAGCCAATGTCCGTCCATCCTCGAGCTGCTTACCAGCAAAGATCAACCT 5944 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||| || || || || || || || || || || || |||||| ||| || Sbjct 5945 CTGCTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTCGCCTTGACATTATCTATGGT 6004 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || ||| || || || || || || || || ||||| || |||| ||||||||| Sbjct 6005 GTCCGAGCTTTCAACCTCGAGGGTGATAGTCTTCCCTGTTAAAGTCTTAACGAATATCTG 6064 Query 172067 CATT 172070 |||| Sbjct 6065 CATT 6068 >seq87 Length=177581 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||||||||||| | | || | || |||||||| || || ||||| || | ||| Sbjct 55396 ATATTATAATCTGCAAGTGTGCGACCATCTTCCAATTGCTTCCCGGCAAAGATGAGCCTC 55455 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||||||||| || || ||||| || || ||||| ||| ||||| || || || Sbjct 55456 TGTTGGTCAGGGGGAATGCCTTCCTTGTCCTGTATCTTAGCCTTTACGTTGTCAATTGTG 55515 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || ||||| || || || || || ||||||| || || | || || ||| Sbjct 55516 TCGGAGCTCTCAACTTCGAGGGTGATCGTCTTGCCAGTTAGGGTCTTGACAAAGATTTGC 55575 Query 172068 AT 172069 || Sbjct 55576 AT 55577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 900750683965200