Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2786 127 6e-24 seq228 102 2e-16 seq15598 95.1 4e-14 seq12228 87.8 5e-12 seq7731 87.8 5e-12 seq7 87.8 5e-12 seq289831 84.2 6e-11 >seq2786 Length=62223 Score = 127 bits (140), Expect = 6e-24 Identities = 312/467 (67%), Gaps = 12/467 (3%) Strand=Plus/Minus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT-TTGC--TTAAATCCA 288945 || || |||||||| || || || |||| || ||| | | || |||| | |||||| Sbjct 37737 ATGTCTGCTCTGTTGGTAGCAGC-AATA--ACGATAATTCCAGTATTGCCCTCGAATCCA 37681 Query 288946 TCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA 289005 ||||| || |||| ||| || || |||||||| ||||||||||| |||| | Sbjct 37680 TCCATTTCAGTCAAAAGTTGGTTTAGAGTTTGTTCTCTTTCATCATTC---CCTCCACCA 37624 Query 289006 TCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACAC 289065 | || | | | || || | ||||||||||||||||||| |||| || | | || Sbjct 37623 ACCCCTGTACCTCT---TTGTCTACCAACAGCATCAATTTCATCAACAAACACTATGCAA 37567 Query 289066 GGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACA 289125 |||| ||| | | || | |||| || | || | || || |||| ||||||| Sbjct 37566 GGAGCATTCTCCTTTGCTTTCTTGAATAGGTCACGGACTCTAGAGGCACCAACACCAACA 37507 Query 289126 TACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCT 289185 |||| || ||||| |||||| | || | || ||| | |||| ||||| || || Sbjct 37506 AACATCTCAACAAACTCAGAACCAGAGATAGAAAAGAAAGGTACACCGGCTTCCCCAGCA 37447 Query 289186 ACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTT 289245 | ||| | |||| ||| ||||| || ||||| || || || | ||||||||||| Sbjct 37446 ATAGCCTTAGCCAAAAGAGTCTTTCCGGTTCCTGGAGGGCCGATAAGAAGAACTCCCTTG 37387 Query 289246 GGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCC 289305 || | | | || ||| ||| | | |||| || |||| || ||||| |||| ||| Sbjct 37386 GGAATTCTAGCACCAACAGCAGTGAACCTCTCGGGTTTCTTCAAGAATTCAACAACCTCC 37327 Query 289306 TCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | || | || || |||||| ||| || || ||| | ||||| Sbjct 37326 ATGAAATCCTGCTTGGCTTCATCAACTCCAGCAACGTCATCGAAAGT 37280 >seq228 Length=161722 Score = 102 bits (112), Expect = 2e-16 Identities = 217/318 (68%), Gaps = 6/318 (2%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| ||||||||||| || || || | | || ||| | | ||| || || | Sbjct 76964 ACCAATGGCATCAATTTCATCTATAAAGACGATACTCGGTGCACATTGCCTTGCTTCTTG 76905 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| | | ||||| | |||| ||||| ||||||| |||| || | || |||||| | Sbjct 76904 AAACAGGTTCCTTACCCTTGATGGTCCAACACCAACAAACATCTCCATGAAATCAGAACC 76845 Query 289149 GGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 |||| | || | ||| | ||| | || |||||| ||| | || | ||||||| Sbjct 76844 AGATA-TGGATAGGAAAGGCACACCCGACTCCCCTGCTGTTGCTTTAGCTAAGAGTGTCT 76786 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGAC 289266 | ||||| || ||||| || |||| ||| | ||||| |||| |||||| |||| | | Sbjct 76785 TTCCTGTGCCTGGTGGACCTACTAAAAGAGCACCCTTGGGTATTTTTGCACCCA--AATC 76728 Query 289267 TT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 || ||| ||| || |||| | ||| | |||| ||| | || | |||||||| Sbjct 76727 TTCATACTTCCTCGGATTCTTGAGAAAGTGCACAAACTCCATGATCTCTTGCTTTGCCTC 76668 Query 289326 ATCACATCCTGCTACATC 289343 |||||| || || ||||| Sbjct 76667 ATCACACCCAGCAACATC 76650 >seq15598 Length=20449 Score = 95.1 bits (104), Expect = 4e-14 Identities = 105/138 (76%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 |||||| | || || |||||||| ||||| | ||| ||| | | ||||||||| ||| Sbjct 2674 TGCAAAAAGATCCCTCACACGGGAAGCTCCCATACCCACAAAGAGTTCTACAAACTCACT 2615 Query 289146 AGCGGAT--ACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 ||||| |||| ||||| | ||||| ||||| || || || ||| | |||||||| Sbjct 2614 CGCGGAACAACTT--ATGAAGGGCACATTAGCTTCACCGGCAACAGCCTTTGCCAGAAGA 2557 Query 289204 GTCTTACCTGTTCCAGGT 289221 ||||| |||||||||||| Sbjct 2556 GTCTTGCCTGTTCCAGGT 2539 >seq12228 Length=19599 Score = 87.8 bits (96), Expect = 5e-12 Identities = 178/262 (68%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 289093 AATT-CTCTTACACGG-GATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGG 289150 |||| |||| |||| || ||||| | |||||| |||| || | ||| || || | | Sbjct 6011 AATTACTCTAACACCTTGAAGCTCCTACTCCAACAAACATCTCAATAAACTCCGACCCCG 5952 Query 289151 ATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTAC 289210 | | | ||| | ||| ||||| || || | ||| | || || || ||||| | Sbjct 5951 ACAGCGACAAGAAGGGCACACCAGCTTCACCAGCAATTGCTTTAGCAAGTAGGGTCTTGC 5892 Query 289211 CTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTAT 289270 |||| || || ||||| |||| || ||||||||||| | |||||| ||||| | | Sbjct 5891 CTGTCCCTGGGGGTCCAACTAAGAGTACTCCCTTTGGAATTTTTGCTCCAGCTGCTGCAA 5832 Query 289271 ATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCAC 289330 | ||||| || | || || || || || || ||| || || | |||||||| || Sbjct 5831 ACTTCTCTGGTGTTTTCAAGAACTCAACGATCTCCATAAAGTCTTGCTTTGCCTCGTCGA 5772 Query 289331 ATCCTGCTACATCAGCAAAAGT 289352 ||| |||||||| |||| || Sbjct 5771 CTCCGGCTACATCGTCAAAGGT 5750 >seq7731 Length=31954 Score = 87.8 bits (96), Expect = 5e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010 || ||||||||||||||| |||||||||||||||||| |||| ||||||||| ||| | Sbjct 7473 TAGCTCAGTTGGTTAGAGCATCGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 7414 Query 409011 TAGAACAtttttttAA 409026 || ||||||||||| Sbjct 7413 GGGACCATTTTTTTAA 7398 >seq7 Length=712593 Score = 87.8 bits (96), Expect = 5e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010 || ||||||||||||||| |||||||||||||||||| |||| ||||||||| ||| | Sbjct 626500 TAGCTCAGTTGGTTAGAGCATCGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 626441 Query 409011 TAGAACAtttttttAA 409026 || ||||||||||| Sbjct 626440 GGGACCATTTTTTTAA 626425 >seq289831 Length=384 Score = 84.2 bits (92), Expect = 6e-11 Identities = 96/127 (76%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 289096 TCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGAT--A 289153 |||||||| || ||||| || | || ||||| | |||||||||||| || || | Sbjct 384 TCTCTTACTCGAGATGCCCCCATGCCGACATAGAGCTCTACAAATTCACTGGCAGAACAA 325 Query 289154 CTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTG 289213 ||| ||||| | ||| | ||||| ||||| || ||| | ||||||||||| || |||| Sbjct 324 CTT--ATGAAGGGTACTTCAGCTTCACCTGCAACAGCCTTTGCCAGAAGTGTTTTGCCTG 267 Query 289214 TTCCAGG 289220 ||||||| Sbjct 266 TTCCAGG 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1464508482967178