Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq2786 127 6e-24
seq228 102 2e-16
seq15598 95.1 4e-14
seq12228 87.8 5e-12
seq7731 87.8 5e-12
seq7 87.8 5e-12
seq289831 84.2 6e-11
>seq2786
Length=62223
Score = 127 bits (140), Expect = 6e-24
Identities = 312/467 (67%), Gaps = 12/467 (3%)
Strand=Plus/Minus
Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT-TTGC--TTAAATCCA 288945
|| || |||||||| || || || |||| || ||| | | || |||| | ||||||
Sbjct 37737 ATGTCTGCTCTGTTGGTAGCAGC-AATA--ACGATAATTCCAGTATTGCCCTCGAATCCA 37681
Query 288946 TCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA 289005
||||| || |||| ||| || || |||||||| ||||||||||| |||| |
Sbjct 37680 TCCATTTCAGTCAAAAGTTGGTTTAGAGTTTGTTCTCTTTCATCATTC---CCTCCACCA 37624
Query 289006 TCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACAC 289065
| || | | | || || | ||||||||||||||||||| |||| || | | ||
Sbjct 37623 ACCCCTGTACCTCT---TTGTCTACCAACAGCATCAATTTCATCAACAAACACTATGCAA 37567
Query 289066 GGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACA 289125
|||| ||| | | || | |||| || | || | || || |||| |||||||
Sbjct 37566 GGAGCATTCTCCTTTGCTTTCTTGAATAGGTCACGGACTCTAGAGGCACCAACACCAACA 37507
Query 289126 TACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCT 289185
|||| || ||||| |||||| | || | || ||| | |||| ||||| || ||
Sbjct 37506 AACATCTCAACAAACTCAGAACCAGAGATAGAAAAGAAAGGTACACCGGCTTCCCCAGCA 37447
Query 289186 ACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTT 289245
| ||| | |||| ||| ||||| || ||||| || || || | |||||||||||
Sbjct 37446 ATAGCCTTAGCCAAAAGAGTCTTTCCGGTTCCTGGAGGGCCGATAAGAAGAACTCCCTTG 37387
Query 289246 GGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCC 289305
|| | | | || ||| ||| | | |||| || |||| || ||||| |||| |||
Sbjct 37386 GGAATTCTAGCACCAACAGCAGTGAACCTCTCGGGTTTCTTCAAGAATTCAACAACCTCC 37327
Query 289306 TCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352
| || | || || |||||| ||| || || ||| | |||||
Sbjct 37326 ATGAAATCCTGCTTGGCTTCATCAACTCCAGCAACGTCATCGAAAGT 37280
>seq228
Length=161722
Score = 102 bits (112), Expect = 2e-16
Identities = 217/318 (68%), Gaps = 6/318 (2%)
Strand=Plus/Minus
Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088
||||| ||||||||||| || || || | | || ||| | | ||| || || |
Sbjct 76964 ACCAATGGCATCAATTTCATCTATAAAGACGATACTCGGTGCACATTGCCTTGCTTCTTG 76905
Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148
||| | | ||||| | |||| ||||| ||||||| |||| || | || |||||| |
Sbjct 76904 AAACAGGTTCCTTACCCTTGATGGTCCAACACCAACAAACATCTCCATGAAATCAGAACC 76845
Query 289149 GGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207
|||| | || | ||| | ||| | || |||||| ||| | || | |||||||
Sbjct 76844 AGATA-TGGATAGGAAAGGCACACCCGACTCCCCTGCTGTTGCTTTAGCTAAGAGTGTCT 76786
Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGAC 289266
| ||||| || ||||| || |||| ||| | ||||| |||| |||||| |||| | |
Sbjct 76785 TTCCTGTGCCTGGTGGACCTACTAAAAGAGCACCCTTGGGTATTTTTGCACCCA--AATC 76728
Query 289267 TT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325
|| ||| ||| || |||| | ||| | |||| ||| | || | ||||||||
Sbjct 76727 TTCATACTTCCTCGGATTCTTGAGAAAGTGCACAAACTCCATGATCTCTTGCTTTGCCTC 76668
Query 289326 ATCACATCCTGCTACATC 289343
|||||| || || |||||
Sbjct 76667 ATCACACCCAGCAACATC 76650
>seq15598
Length=20449
Score = 95.1 bits (104), Expect = 4e-14
Identities = 105/138 (76%), Gaps = 4/138 (3%)
Strand=Plus/Minus
Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145
|||||| | || || |||||||| ||||| | ||| ||| | | ||||||||| |||
Sbjct 2674 TGCAAAAAGATCCCTCACACGGGAAGCTCCCATACCCACAAAGAGTTCTACAAACTCACT 2615
Query 289146 AGCGGAT--ACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203
||||| |||| ||||| | ||||| ||||| || || || ||| | ||||||||
Sbjct 2614 CGCGGAACAACTT--ATGAAGGGCACATTAGCTTCACCGGCAACAGCCTTTGCCAGAAGA 2557
Query 289204 GTCTTACCTGTTCCAGGT 289221
||||| ||||||||||||
Sbjct 2556 GTCTTGCCTGTTCCAGGT 2539
>seq12228
Length=19599
Score = 87.8 bits (96), Expect = 5e-12
Identities = 178/262 (68%), Gaps = 2/262 (1%)
Strand=Plus/Minus
Query 289093 AATT-CTCTTACACGG-GATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGG 289150
|||| |||| |||| || ||||| | |||||| |||| || | ||| || || | |
Sbjct 6011 AATTACTCTAACACCTTGAAGCTCCTACTCCAACAAACATCTCAATAAACTCCGACCCCG 5952
Query 289151 ATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTAC 289210
| | | ||| | ||| ||||| || || | ||| | || || || ||||| |
Sbjct 5951 ACAGCGACAAGAAGGGCACACCAGCTTCACCAGCAATTGCTTTAGCAAGTAGGGTCTTGC 5892
Query 289211 CTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTAT 289270
|||| || || ||||| |||| || ||||||||||| | |||||| ||||| | |
Sbjct 5891 CTGTCCCTGGGGGTCCAACTAAGAGTACTCCCTTTGGAATTTTTGCTCCAGCTGCTGCAA 5832
Query 289271 ATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCAC 289330
| ||||| || | || || || || || || ||| || || | |||||||| ||
Sbjct 5831 ACTTCTCTGGTGTTTTCAAGAACTCAACGATCTCCATAAAGTCTTGCTTTGCCTCGTCGA 5772
Query 289331 ATCCTGCTACATCAGCAAAAGT 289352
||| |||||||| |||| ||
Sbjct 5771 CTCCGGCTACATCGTCAAAGGT 5750
>seq7731
Length=31954
Score = 87.8 bits (96), Expect = 5e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010
|| ||||||||||||||| |||||||||||||||||| |||| ||||||||| ||| |
Sbjct 7473 TAGCTCAGTTGGTTAGAGCATCGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 7414
Query 409011 TAGAACAtttttttAA 409026
|| |||||||||||
Sbjct 7413 GGGACCATTTTTTTAA 7398
>seq7
Length=712593
Score = 87.8 bits (96), Expect = 5e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010
|| ||||||||||||||| |||||||||||||||||| |||| ||||||||| ||| |
Sbjct 626500 TAGCTCAGTTGGTTAGAGCATCGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 626441
Query 409011 TAGAACAtttttttAA 409026
|| |||||||||||
Sbjct 626440 GGGACCATTTTTTTAA 626425
>seq289831
Length=384
Score = 84.2 bits (92), Expect = 6e-11
Identities = 96/127 (76%), Gaps = 4/127 (3%)
Strand=Plus/Minus
Query 289096 TCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGAT--A 289153
|||||||| || ||||| || | || ||||| | |||||||||||| || || |
Sbjct 384 TCTCTTACTCGAGATGCCCCCATGCCGACATAGAGCTCTACAAATTCACTGGCAGAACAA 325
Query 289154 CTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTG 289213
||| ||||| | ||| | ||||| ||||| || ||| | ||||||||||| || ||||
Sbjct 324 CTT--ATGAAGGGTACTTCAGCTTCACCTGCAACAGCCTTTGCCAGAAGTGTTTTGCCTG 267
Query 289214 TTCCAGG 289220
|||||||
Sbjct 266 TTCCAGG 260
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1464508482967178
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |