Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq5412 349 4e-91 seq8546 208 8e-49 seq25216 179 4e-40 seq29420 176 5e-39 seq59 161 1e-34 seq8630 105 7e-18 seq4835 82.4 8e-11 >seq5412 Length=31808 Score = 349 bits (386), Expect = 4e-91 Identities = 494/692 (71%), Gaps = 8/692 (1%) Strand=Plus/Minus Query 157626 GGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCC 157684 |||| ||||| |||||||||| || | ||| | ||||| ||| || || || | ||| Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225 Query 157685 TTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTC 157744 ||| | |||||||| || || || || || || || |||||||| || ||| || || Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165 Query 157745 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTT 157804 | || || ||||| || ||||||||||| || | | ||| || || ||| | Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105 Query 157805 CACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCT 157864 ||||| ||||| || |||||||| ||||| ||||||| ||| | || || |||||||| Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045 Query 157865 TTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGG 157924 | | || | || ||||||||| | ||||| | | |||||||| ||||||||| Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985 Query 157925 GAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTC 157984 |||||| | |||| | ||||||||||| ||||| ||| || ||||| || || || Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925 Query 157985 GCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCT 158044 || | || ||||||| ||| | |||| || | ||| |||| || || ||| | Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865 Query 158045 ATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAAC 158104 |||||||| || || ||||||||||| |||| |||| |||||||||| || || |||||| Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805 Query 158105 ATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTC 158164 |||||||||||||| || || ||| | || || ||||| ||||||| || | || ||| Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745 Query 158165 TCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAG 158224 | ||| || | | || || || | | | ||||| || |||| || Sbjct 14744 ------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691 Query 158225 TCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCA 158284 || || | ||||||| | | ||||||||||||||||| ||||| ||||| || || Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631 Query 158285 CATGGCTACTTCGGTCGTTTGATCTTCCAATA 158316 ||||| || || || || || ||||||||||| Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATA 14599 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 158430 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATG 158489 |||| |||||||| || | ||||| |||| |||||||| | || || ||||| ||| Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537 Query 158490 TACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 158549 | | |||||| || ||||||||||||||||||||||| ||||| || | ||||||| Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477 Query 158550 CACTCGACCTTGCTGC 158565 | |||||||| || || Sbjct 14476 CTCTCGACCTAGCAGC 14461 >seq8546 Length=31398 Score = 208 bits (230), Expect = 8e-49 Identities = 315/445 (71%), Gaps = 6/445 (1%) Strand=Plus/Minus Query 158123 CATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGT 158182 || ||| | || || ||||| |||||||| || || | ||| || |||||| || | Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 158183 CTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACGGTTA 158241 | || || || | | | || | ||||| || |||| | || || | ||||| Sbjct 13144 TTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTA 13086 Query 158242 CAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCG 158301 || || ||||||||||| || || | || || || || || ||||| || || || || Sbjct 13085 CAGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCG 13026 Query 158302 TTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGC 158361 || ||||||||||| ||| |||||| | || | ||| || || |||||| | | ||| Sbjct 13025 ATTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGC 12966 Query 158362 ATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCT 158421 |||||||| || || || ||||| || | | || | || |||||||| | ||| Sbjct 12965 TTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCT 12906 Query 158422 GAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTG 158481 ||||| ||||| |||||||| || | ||||| |||| |||||||| || || Sbjct 12905 AAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT----AATTATTG 12850 Query 158482 GGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACA 158541 ||| ||| | | ||||||||| ||||||||||||||||||||||| ||||| || || Sbjct 12849 GGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 12790 Query 158542 CAACTTCCCACTCGACCTTGCTGCT 158566 ||||||| || ||||| |||||| Sbjct 12789 TAACTTCCATCTAGACCTAGCTGCT 12765 >seq25216 Length=8180 Score = 179 bits (198), Expect = 4e-40 Identities = 183/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 157940 TTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCT 157999 || ||||||||||| ||||| | | || ||||| ||||| || || || || ||||| Sbjct 7256 TTTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCT 7197 Query 158000 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 158059 || ||| | |||| || | |||||||| || || |||| ||||||||| || || Sbjct 7196 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 7137 Query 158060 TCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCG 158119 ||||||||||| |||| |||| |||||||||| | || |||||||||||||||||||| Sbjct 7136 TCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCA 7077 Query 158120 TTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 158178 || || ||| | || || | ||| |||||||| || || || ||| ||||||||| || Sbjct 7076 TTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 7018 >seq29420 Length=7120 Score = 176 bits (194), Expect = 5e-39 Identities = 255/360 (71%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 157693 TGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGG 157752 |||||| || || || || || || || |||||||| || |||| || || | | || Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474 Query 157753 TAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTA 157812 ||||| || |||||||||| || | || |||| || || ||| | ||||| || Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534 Query 157813 TCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACT 157872 ||| || |||||||| ||||| ||||||| ||| | || || |||||||||| | || Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594 Query 157873 CGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTC 157932 || || |||||| | ||||| | | |||||||| ||||||||||||||| Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654 Query 157933 ATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGC 157992 | |||| | ||||||||||| ||||| ||| || ||||| | ||| || || || || Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714 Query 157993 ATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCT 158052 || || | ||| | |||| || | |||||||| || || |||| ||||||||| Sbjct 3715 TACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774 >seq59 Length=339703 Score = 161 bits (178), Expect = 1e-34 Identities = 190/257 (74%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 158033 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 158092 || || |||| ||||||||| || | ||||||||||| |||| |||| |||||||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 158093 GCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGT 158152 || || |||||||||||||||||||| || || ||| | | || ||||| |||||||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 158153 GGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACG 158212 || || || ||| || |||||| || | | || || || | || | ||||| Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 158213 ACTGAAACAGAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAAC 158272 || |||| || || || | ||||||| ||| ||||||||||||||||| ||||| Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 158273 ATCGTCGCAGCACATGG 158289 || || || | ||||| Sbjct 52549 ATTGTAGCTACTCATGG 52565 >seq8630 Length=23577 Score = 105 bits (116), Expect = 7e-18 Identities = 104/133 (78%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 158237 GGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGT-CGCAGCACATGGCTACTT 158295 |||||||| || ||||||||||| || || || || ||||| ||| || ||||| || || Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 158296 CGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCT 158355 ||||| || ||||||||||| ||| |||||||| || ||||| || || ||||| | Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616 Query 158356 TGCTGCATGGCCT 158368 || || |||||| Sbjct 7617 AGCCGCTTGGCCT 7629 >seq4835 Length=43218 Score = 82.4 bits (90), Expect = 8e-11 Identities = 100/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 158237 GGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTC 158296 ||||||| || ||||||||||| || || || || ||||| || || ||||| || || Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118 Query 158297 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTC----CTTGCACTTCTT 158352 || | || ||||||||||| ||| |||||||| || ||||| || || ||||| Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAATTACATTTCTT 9178 Query 158353 CCTTGCTGCATGGCCT 158368 | || || |||||| Sbjct 9179 ATTAGCCGCTTGGCCT 9194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545717567160080