Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq5412 385 5e-102 seq8546 226 3e-54 seq29420 224 1e-53 seq25216 168 7e-37 seq59 156 5e-33 seq3927 140 4e-28 seq78858 111 2e-19 seq8630 104 3e-17 seq8085 91.5 2e-13 seq16924 89.7 6e-13 >seq5412 Length=31808 Score = 385 bits (426), Expect = 5e-102 Identities = 502/692 (73%), Gaps = 8/692 (1%) Strand=Plus/Minus Query 150885 GGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCAGCAACCATTTGC-TTCATCGTGGCA 150943 |||| || || |||||||||| || | ||| | ||||| || | || || | || Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225 Query 150944 TTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTG 151003 ||||| |||||||| || || || || ||||| || |||||||| ||| ||| ||||| Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165 Query 151004 ATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTG 151063 | ||||| ||||| || ||||||||||| || ||| ||| | ||||| ||| || Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105 Query 151064 CACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCT 151123 ||||| ||||| || |||||||| || ||| | ||||||||| | ||||| |||||||| Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045 Query 151124 TTCCAACTCGTTGTCTTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAGTGG 151183 | | || |||| || |||||| | ||||| | | ||||||||||||||||||| Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985 Query 151184 GAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGCGTTGCATACTCTGCTCCAGTT 151243 ||||| || ||| |||||||||| || ||||| ||||| || || || || ||| Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925 Query 151244 GCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCA 151303 || |||| | ||| || ||| | |||| || | ||| |||| || ||| ||| Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865 Query 151304 ATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 151363 ||||| || || |||||||| || ||||||| |||| |||| ||||| || ||||||||| Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805 Query 151364 ATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTC 151423 || || |||||||| || || ||| | || || |||||||| |||| || | || ||| Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745 Query 151424 TCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAG 151483 | ||| |||||| |||| || || || | | || ||||| ||||| || Sbjct 14744 ------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691 Query 151484 TCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCA 151543 || || | ||||||| | | |||||||| |||||||| || || ||||| || || Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631 Query 151544 CACGGTTACTTTGGTCGTCTCATCTTCCAATA 151575 || ||||| ||||| || | ||||||||||| Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATA 14599 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 151689 TCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACG 151748 |||| |||||||| || | | ||| |||| || || | || || ||||| || Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537 Query 151749 TTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCC 151808 || | ||||| | || ||||||||||||||||| || |||||||||| ||||||| Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477 Query 151809 CTCTCGACCTTGCTGC 151824 |||||||||| || || Sbjct 14476 CTCTCGACCTAGCAGC 14461 >seq8546 Length=31398 Score = 226 bits (250), Expect = 3e-54 Identities = 318/445 (71%), Gaps = 6/445 (1%) Strand=Plus/Minus Query 151382 CATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCACGGTTCT 151441 || ||| | || || |||||||| ||||| || || | ||| | ||||| |||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 151442 CTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTATGGTTAC 151501 |||| || ||| || | | || ||||| ||||| | ||| || | |||||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 151502 AAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTTGGTCGT 151561 | || |||||||| || || || | || || || || || || ||||| ||||| || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 151562 CTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCA 151621 ||||||||||||| ||| |||||| |||| | ||| | || |||||| | | || Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965 Query 151622 TGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTCAACCTG 151681 |||||||| || ||||| ||||| ||| | | ||| | || || |||||||| | ||| Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905 Query 151682 AACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTG-AACACCTG 151740 ||||| ||||| |||||||| || | | ||| || ||| ||| || || || Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGT-----CAAGGTCGTGTAATTATTG 12850 Query 151741 GGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCA 151800 ||| || || | ||||| || || ||||||||||||||||| || ||||||||||| Sbjct 12849 GGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 12790 Query 151801 CAACTTCCCTCTCGACCTTGCTGCT 151825 ||||||| ||| ||||| |||||| Sbjct 12789 TAACTTCCATCTAGACCTAGCTGCT 12765 >seq29420 Length=7120 Score = 224 bits (248), Expect = 1e-53 Identities = 268/361 (74%), Gaps = 2/361 (1%) Strand=Plus/Plus Query 150952 TGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGG 151011 |||||| || || || || ||||| || |||||||| ||| |||| ||||| | |||| Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474 Query 151012 TAACAACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTA 151071 ||||| || |||||||||| || |||| ||||| ||||| ||| ||||||| || Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534 Query 151072 TCCCATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACT 151131 ||| || |||||||| || ||| | ||||||||| | ||||| |||||||||| | || Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594 Query 151132 CGTTGTCTTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAGTGGGAACTGTC 151191 ||| || |||||| | ||||| | | |||||||||||||||||||||||| Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654 Query 151192 TTACCGCTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTG 151250 || ||| |||||||||| || ||||| ||| ||||| || || | ||| ||||| |||| Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGAT-TGCTGTTGCGTATTCAGTTCCTGTTGCGGCTG 3713 Query 151251 CGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCC 151310 | | | | | ||| | |||| || | |||||||| || ||||||| ||||| | Sbjct 3714 CTACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTC 3773 Query 151311 T 151311 | Sbjct 3774 T 3774 >seq25216 Length=8180 Score = 168 bits (186), Expect = 7e-37 Identities = 192/255 (75%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 151199 TTGGGTATGCGTCCCTGGATCTGCG-TTGCATACTCTGCTCCAGTTGCTGCTGCGAGTGC 151257 || |||||||| || ||||| ||| |||| || || ||||| ||||| ||||| | ||| Sbjct 7256 TTTGGTATGCGCCCTTGGAT-TGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGC 7198 Query 151258 AGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGTAT 151317 || ||| | |||| || | |||||||| || ||||||| ||||| || || || Sbjct 7197 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 7138 Query 151318 TTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCACCC 151377 |||||| || ||||||| |||| |||| ||||| | ||||||||||| || |||||||| Sbjct 7137 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCC 7078 Query 151378 CTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCACGG 151437 || || ||| | || || | |||||| ||||| || || || ||| || ||||| || Sbjct 7077 ATTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 7018 Query 151438 TTCTCTGGTTACTTC 151452 |||| |||| || || Sbjct 7017 TTCTTTGGTAACCTC 7003 >seq59 Length=339703 Score = 156 bits (172), Expect = 5e-33 Identities = 190/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 151292 TTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTGTCTTCCAA 151351 || ||||||| ||||| || || ||||||| || ||||||| |||| |||| ||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 151352 GCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGT 151411 || ||||||||||| || |||||||| || || ||| | | || |||||||| ||||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 151412 GGATCGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACC 151471 || || || ||| | ||||| |||||| |||| || || || || | || ||| Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 151472 ACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAAC 151531 || ||||| || || || | ||||||| ||| |||||||| |||||||| || || Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 151532 ATCGTTGCCGCACACGGTT 151550 || || || | || |||| Sbjct 52549 ATTGTAGCTACTCATGGTT 52567 >seq3927 Length=49767 Score = 140 bits (154), Expect = 4e-28 Identities = 185/253 (73%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 152647 TGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTT 152706 ||| ||||||| || ||||| || ||||| | ||||| ||||| ||| | || || ||| Sbjct 26007 TGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATTT 26066 Query 152707 GAACTGGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTAT 152765 ||||| || || ||| || | | || || || ||||| || || || | |||||| || Sbjct 26067 GAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATAGCATTATTTGGTCCAAT 26125 Query 152766 CGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGC 152825 || |||||||| || ||||| || || || || ||||| || ||||||| || || Sbjct 26126 TGCCATTTTTGTTTCGGTGTTTCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGC 26185 Query 152826 TCCATCTTTCGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAA 152885 || ||| || || ||| | || ||| ||||| | ||||| ||||||| || || || Sbjct 26186 GCCTAGTTTTGGTGTAGCATCTATATTC-GATTCATCCTCTTTTTTCAAGGGTTTCATAA 26244 Query 152886 CTGGACATTGAAT 152898 |||||||||||| Sbjct 26245 TTGGACATTGAAT 26257 >seq78858 Length=18568 Score = 111 bits (122), Expect = 2e-19 Identities = 136/182 (75%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGA 152418 |||||| | ||||||||||| | ||| ||||||||||||||||| ||||| || || Sbjct 917 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTCGGTTG-TCCGGT 975 Query 152419 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 152478 || | || ||||| ||| ||| | ||| | || |||||| |||| || | || || Sbjct 976 CTATTGCTCTTTCCGTGTGCGTATTTCGCTGTAGGAGGTTGGTTTACGGGTTCAACCTTT 1035 Query 152479 GCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTTCT 152537 | || ||||||||||| || ||||| ||||||||| |||| ||| |||| ||||| Sbjct 1036 GTAACTTCCTGGTATACTCATGGTTTGGCCAGTTCCTATTTGGAAGGCTGCAA--TTTCT 1093 Query 152538 TA 152539 || Sbjct 1094 TA 1095 >seq8630 Length=23577 Score = 104 bits (114), Expect = 3e-17 Identities = 119/159 (75%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 151470 CCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACA 151529 |||| |||| || ||| || | |||||||| || |||||||| || || || || | Sbjct 7471 CCACATAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCAAGAGGAGGAAACTTAGA 7530 Query 151530 ACATCGTT-GCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTCAAC 151588 | ||||| || || || ||||| |||||||| ||||||||||||| ||| |||||| Sbjct 7531 ATATCGTACGCTGCTCATGGTTATTTTGGTCGATTCATCTTCCAATATGCTAGTTTCAAC 7590 Query 151589 AATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCT 151627 ||||| ||||| | || ||||| | || || |||||| Sbjct 7591 AATTCTCGTTCTTTACATTTCTTATTAGCCGCTTGGCCT 7629 >seq8085 Length=24635 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 150968 ATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCT 151027 || ||||| ||||||||||| ||| |||| ||||| | ||||| ||||| || ||||| Sbjct 19924 ATTGATGGTATCCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTTTCTCT 19865 Query 151028 GGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCA 151087 ||| | || |||| ||||| ||||| ||| |||| || ||||| || |||| |||| Sbjct 19864 GGTTCCATTATTCCGACTTCTGCTGCTATAGGTTTGCAATTTTATCCAATGTGGGTAGCA 19805 >seq16924 Length=13081 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 153233 CAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTC 153292 |||||||||||||||||||||| ||||| || || ||||| || || ||||| ||| ||| Sbjct 13078 CAGAAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTCTTAAACGAGGGTATTC 13019 Query 153293 GTGCTTGGTTGGCACCTGTTGACCAACCTCATGAGAACT 153331 | |||||| |||| || ||| | |||||| | |||| Sbjct 13018 GCGCTTGGGTGGCGGCTCAAGACTAGCCTCATAAAAACT 12980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546959520693680