Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_021536.1
Length=171797
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 385 5e-102
seq8546 226 3e-54
seq29420 224 1e-53
seq25216 168 7e-37
seq59 156 5e-33
seq3927 140 4e-28
seq78858 111 2e-19
seq8630 104 3e-17
seq8085 91.5 2e-13
seq16924 89.7 6e-13
>seq5412
Length=31808
Score = 385 bits (426), Expect = 5e-102
Identities = 502/692 (73%), Gaps = 8/692 (1%)
Strand=Plus/Minus
Query 150885 GGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCAGCAACCATTTGC-TTCATCGTGGCA 150943
|||| || || |||||||||| || | ||| | ||||| || | || || | ||
Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225
Query 150944 TTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTG 151003
||||| |||||||| || || || || ||||| || |||||||| ||| ||| |||||
Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165
Query 151004 ATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTG 151063
| ||||| ||||| || ||||||||||| || ||| ||| | ||||| ||| ||
Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105
Query 151064 CACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCT 151123
||||| ||||| || |||||||| || ||| | ||||||||| | ||||| ||||||||
Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045
Query 151124 TTCCAACTCGTTGTCTTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAGTGG 151183
| | || |||| || |||||| | ||||| | | |||||||||||||||||||
Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985
Query 151184 GAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGCGTTGCATACTCTGCTCCAGTT 151243
||||| || ||| |||||||||| || ||||| ||||| || || || || |||
Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925
Query 151244 GCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCA 151303
|| |||| | ||| || ||| | |||| || | ||| |||| || ||| |||
Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865
Query 151304 ATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 151363
||||| || || |||||||| || ||||||| |||| |||| ||||| || |||||||||
Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805
Query 151364 ATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTC 151423
|| || |||||||| || || ||| | || || |||||||| |||| || | || |||
Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745
Query 151424 TCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAG 151483
| ||| |||||| |||| || || || | | || ||||| ||||| ||
Sbjct 14744 ------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691
Query 151484 TCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCA 151543
|| || | ||||||| | | |||||||| |||||||| || || ||||| || ||
Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631
Query 151544 CACGGTTACTTTGGTCGTCTCATCTTCCAATA 151575
|| ||||| ||||| || | |||||||||||
Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATA 14599
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 151689 TCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACG 151748
|||| |||||||| || | | ||| |||| || || | || || ||||| ||
Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537
Query 151749 TTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCC 151808
|| | ||||| | || ||||||||||||||||| || |||||||||| |||||||
Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477
Query 151809 CTCTCGACCTTGCTGC 151824
|||||||||| || ||
Sbjct 14476 CTCTCGACCTAGCAGC 14461
>seq8546
Length=31398
Score = 226 bits (250), Expect = 3e-54
Identities = 318/445 (71%), Gaps = 6/445 (1%)
Strand=Plus/Minus
Query 151382 CATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCACGGTTCT 151441
|| ||| | || || |||||||| ||||| || || | ||| | ||||| ||||||
Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145
Query 151442 CTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTATGGTTAC 151501
|||| || ||| || | | || ||||| ||||| | ||| || | ||||||
Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085
Query 151502 AAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTTGGTCGT 151561
| || |||||||| || || || | || || || || || || ||||| ||||| ||
Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025
Query 151562 CTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCA 151621
||||||||||||| ||| |||||| |||| | ||| | || |||||| | | ||
Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965
Query 151622 TGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTCAACCTG 151681
|||||||| || ||||| ||||| ||| | | ||| | || || |||||||| | |||
Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905
Query 151682 AACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTG-AACACCTG 151740
||||| ||||| |||||||| || | | ||| || ||| ||| || || ||
Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGT-----CAAGGTCGTGTAATTATTG 12850
Query 151741 GGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCA 151800
||| || || | ||||| || || ||||||||||||||||| || |||||||||||
Sbjct 12849 GGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 12790
Query 151801 CAACTTCCCTCTCGACCTTGCTGCT 151825
||||||| ||| ||||| ||||||
Sbjct 12789 TAACTTCCATCTAGACCTAGCTGCT 12765
>seq29420
Length=7120
Score = 224 bits (248), Expect = 1e-53
Identities = 268/361 (74%), Gaps = 2/361 (1%)
Strand=Plus/Plus
Query 150952 TGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGG 151011
|||||| || || || || ||||| || |||||||| ||| |||| ||||| | ||||
Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474
Query 151012 TAACAACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTA 151071
||||| || |||||||||| || |||| ||||| ||||| ||| ||||||| ||
Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534
Query 151072 TCCCATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACT 151131
||| || |||||||| || ||| | ||||||||| | ||||| |||||||||| | ||
Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594
Query 151132 CGTTGTCTTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAGTGGGAACTGTC 151191
||| || |||||| | ||||| | | ||||||||||||||||||||||||
Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654
Query 151192 TTACCGCTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTG 151250
|| ||| |||||||||| || ||||| ||| ||||| || || | ||| ||||| ||||
Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGAT-TGCTGTTGCGTATTCAGTTCCTGTTGCGGCTG 3713
Query 151251 CGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCC 151310
| | | | | ||| | |||| || | |||||||| || ||||||| ||||| |
Sbjct 3714 CTACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTC 3773
Query 151311 T 151311
|
Sbjct 3774 T 3774
>seq25216
Length=8180
Score = 168 bits (186), Expect = 7e-37
Identities = 192/255 (75%), Gaps = 2/255 (1%)
Strand=Plus/Minus
Query 151199 TTGGGTATGCGTCCCTGGATCTGCG-TTGCATACTCTGCTCCAGTTGCTGCTGCGAGTGC 151257
|| |||||||| || ||||| ||| |||| || || ||||| ||||| ||||| | |||
Sbjct 7256 TTTGGTATGCGCCCTTGGAT-TGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGC 7198
Query 151258 AGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGTAT 151317
|| ||| | |||| || | |||||||| || ||||||| ||||| || || ||
Sbjct 7197 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 7138
Query 151318 TTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCACCC 151377
|||||| || ||||||| |||| |||| ||||| | ||||||||||| || ||||||||
Sbjct 7137 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCC 7078
Query 151378 CTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCACGG 151437
|| || ||| | || || | |||||| ||||| || || || ||| || ||||| ||
Sbjct 7077 ATTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 7018
Query 151438 TTCTCTGGTTACTTC 151452
|||| |||| || ||
Sbjct 7017 TTCTTTGGTAACCTC 7003
>seq59
Length=339703
Score = 156 bits (172), Expect = 5e-33
Identities = 190/259 (73%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 151292 TTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTGTCTTCCAA 151351
|| ||||||| ||||| || || ||||||| || ||||||| |||| |||| |||||
Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368
Query 151352 GCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGT 151411
|| ||||||||||| || |||||||| || || ||| | | || |||||||| |||||
Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428
Query 151412 GGATCGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACC 151471
|| || || ||| | ||||| |||||| |||| || || || || | || |||
Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488
Query 151472 ACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAAC 151531
|| ||||| || || || | ||||||| ||| |||||||| |||||||| || ||
Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548
Query 151532 ATCGTTGCCGCACACGGTT 151550
|| || || | || ||||
Sbjct 52549 ATTGTAGCTACTCATGGTT 52567
>seq3927
Length=49767
Score = 140 bits (154), Expect = 4e-28
Identities = 185/253 (73%), Gaps = 3/253 (1%)
Strand=Plus/Plus
Query 152647 TGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTT 152706
||| ||||||| || ||||| || ||||| | ||||| ||||| ||| | || || |||
Sbjct 26007 TGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATTT 26066
Query 152707 GAACTGGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTAT 152765
||||| || || ||| || | | || || || ||||| || || || | |||||| ||
Sbjct 26067 GAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATAGCATTATTTGGTCCAAT 26125
Query 152766 CGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGC 152825
|| |||||||| || ||||| || || || || ||||| || ||||||| || ||
Sbjct 26126 TGCCATTTTTGTTTCGGTGTTTCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGC 26185
Query 152826 TCCATCTTTCGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAA 152885
|| ||| || || ||| | || ||| ||||| | ||||| ||||||| || || ||
Sbjct 26186 GCCTAGTTTTGGTGTAGCATCTATATTC-GATTCATCCTCTTTTTTCAAGGGTTTCATAA 26244
Query 152886 CTGGACATTGAAT 152898
||||||||||||
Sbjct 26245 TTGGACATTGAAT 26257
>seq78858
Length=18568
Score = 111 bits (122), Expect = 2e-19
Identities = 136/182 (75%), Gaps = 4/182 (2%)
Strand=Plus/Plus
Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGA 152418
|||||| | ||||||||||| | ||| ||||||||||||||||| ||||| || ||
Sbjct 917 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTCGGTTG-TCCGGT 975
Query 152419 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 152478
|| | || ||||| ||| ||| | ||| | || |||||| |||| || | || ||
Sbjct 976 CTATTGCTCTTTCCGTGTGCGTATTTCGCTGTAGGAGGTTGGTTTACGGGTTCAACCTTT 1035
Query 152479 GCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTTCT 152537
| || ||||||||||| || ||||| ||||||||| |||| ||| |||| |||||
Sbjct 1036 GTAACTTCCTGGTATACTCATGGTTTGGCCAGTTCCTATTTGGAAGGCTGCAA--TTTCT 1093
Query 152538 TA 152539
||
Sbjct 1094 TA 1095
>seq8630
Length=23577
Score = 104 bits (114), Expect = 3e-17
Identities = 119/159 (75%), Gaps = 1/159 (1%)
Strand=Plus/Plus
Query 151470 CCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACA 151529
|||| |||| || ||| || | |||||||| || |||||||| || || || || |
Sbjct 7471 CCACATAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCAAGAGGAGGAAACTTAGA 7530
Query 151530 ACATCGTT-GCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTCAAC 151588
| ||||| || || || ||||| |||||||| ||||||||||||| ||| ||||||
Sbjct 7531 ATATCGTACGCTGCTCATGGTTATTTTGGTCGATTCATCTTCCAATATGCTAGTTTCAAC 7590
Query 151589 AATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCT 151627
||||| ||||| | || ||||| | || || ||||||
Sbjct 7591 AATTCTCGTTCTTTACATTTCTTATTAGCCGCTTGGCCT 7629
>seq8085
Length=24635
Score = 91.5 bits (100), Expect = 2e-13
Identities = 92/120 (77%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 150968 ATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCT 151027
|| ||||| ||||||||||| ||| |||| ||||| | ||||| ||||| || |||||
Sbjct 19924 ATTGATGGTATCCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTTTCTCT 19865
Query 151028 GGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCA 151087
||| | || |||| ||||| ||||| ||| |||| || ||||| || |||| ||||
Sbjct 19864 GGTTCCATTATTCCGACTTCTGCTGCTATAGGTTTGCAATTTTATCCAATGTGGGTAGCA 19805
>seq16924
Length=13081
Score = 89.7 bits (98), Expect = 6e-13
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 153233 CAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTC 153292
|||||||||||||||||||||| ||||| || || ||||| || || ||||| ||| |||
Sbjct 13078 CAGAAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTCTTAAACGAGGGTATTC 13019
Query 153293 GTGCTTGGTTGGCACCTGTTGACCAACCTCATGAGAACT 153331
| |||||| |||| || ||| | |||||| | ||||
Sbjct 13018 GCGCTTGGGTGGCGGCTCAAGACTAGCCTCATAAAAACT 12980
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546959520693680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |