Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_021559.1
Length=179063
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 289 3e-73
seq8546 210 2e-49
seq59 149 7e-31
seq29420 147 2e-30
seq25216 138 1e-27
seq8630 91.5 2e-13
seq4835 87.8 2e-12
>seq5412
Length=31808
Score = 289 bits (320), Expect = 3e-73
Identities = 453/646 (70%), Gaps = 8/646 (1%)
Strand=Plus/Minus
Query 72328 TTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTT 72387
|| ||| |||| ||||| ||||||||||| || ||||| || || || | ||||| |||
Sbjct 15236 TTTATTATAGCCTTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 15177
Query 72388 GCGGGTTCT-TTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAA 72446
|| ||| ||||| || || ||||| || ||||||||||| | ||| |||
Sbjct 15176 TTTGGATCTCTTCTT-TACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGC 15118
Query 72447 CGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTA 72506
|| ||||| || ||||| ||||| || |||||||| || || | || || ||||| ||
Sbjct 15117 TGCTATAGGTTTGCACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATA 15058
Query 72507 TAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACAT 72566
|| || ||||| || || || || |||| |||||| | |||| | || |||||
Sbjct 15057 CAATGGTGGTCCATATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACAT 14998
Query 72567 GGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATA 72626
|||| | |||||||||| | | | || || ||| | |||||||| ||| || ||
Sbjct 14997 GGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTA 14938
Query 72627 CTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTC 72686
||||| ||||| | | || ||| || ||| | | || ||| | ||| | ||
Sbjct 14937 TTCAGCCCCTGTTGCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAG 14878
Query 72687 ATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCA 72746
|| ||| |||||||||| ||||| || || ||||| |||||||||||| | || |||||
Sbjct 14877 CTTTTCTAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCA 14818
Query 72747 AGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGG 72806
|| || |||||||| || |||||||| || || ||| ||| ||||| ||| | ||||
Sbjct 14817 GGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGA 14758
Query 72807 TGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGAC 72866
|| || ||||| ||| ||||| | || || || | | ||||| || ||
Sbjct 14757 CGGCTACCTATTCAG------GCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAAC 14704
Query 72867 AACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAA 72926
||||| || || | || | || || | | | || ||||| ||||| || |||||
Sbjct 14703 CACAGAAAATGAATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAA 14644
Query 72927 CATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTAT 72972
|| || ||||||||||| || || || ||||||||||||| |||
Sbjct 14643 TATCGTAGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598
>seq8546
Length=31398
Score = 210 bits (232), Expect = 2e-49
Identities = 313/441 (71%), Gaps = 6/441 (1%)
Strand=Plus/Minus
Query 72778 CATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCA 72837
|| ||| ||| ||||| ||| | ||||| || | ||||||| ||||| |||||
Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145
Query 72838 CTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTAT 72897
| || || || | | ||||| || || ||||| || | || | || ||
Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085
Query 72898 AAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGA 72957
| || || ||||| || ||||| | || ||||| ||||||||||| || || || ||
Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025
Query 72958 TTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTA 73017
|| |||||||| ||||| |||||| | |||| ||| ||||| |||||| | | ||
Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965
Query 73018 TTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTT 73077
| |||||||| || ||||||| || | | ||||| |||| |||||||| | |||
Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905
Query 73078 AACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACA-TG 73136
||||| ||||| ||||||||||| ||||| || | | ||| | || | | ||
Sbjct 12904 AACGGCTTCAATTTCAACCAATC---TGTAGTTG--ATAGTCAAGGTCGTGTAATTATTG 12850
Query 73137 GGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACA 73196
|| ||| || ||||| | || |||||||| |||||||||||||||||| | ||||| ||
Sbjct 12849 GGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 12790
Query 73197 CAACTTCCCACTAGACCTAGC 73217
||||||| |||||||||||
Sbjct 12789 TAACTTCCATCTAGACCTAGC 12769
>seq59
Length=339703
Score = 149 bits (164), Expect = 7e-31
Identities = 187/257 (73%), Gaps = 0/257 (0%)
Strand=Plus/Plus
Query 72688 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 72747
|| |||||||||||||| ||||| | || ||||| |||||||||||| | || |||||
Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368
Query 72748 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGT 72807
|| || |||||||| || |||||||| || || ||| | | ||||| ||| | |||||
Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428
Query 72808 GGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACA 72867
|| || ||||||| ||||| ||||| | || || || | | || || || ||
Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488
Query 72868 ACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAAC 72927
||||| || || | || | || || | ||| || ||||| ||||| || |||||
Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548
Query 72928 ATTGTTGCTGCTCATGG 72944
||||| ||| |||||||
Sbjct 52549 ATTGTAGCTACTCATGG 52565
>seq29420
Length=7120
Score = 147 bits (162), Expect = 2e-30
Identities = 252/363 (69%), Gaps = 2/363 (1%)
Strand=Plus/Plus
Query 72348 TGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATG 72406
||||||||| || ||||| || || || | ||||| ||| | || ||| ||||| | |
Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTC-ACG 3473
Query 72407 GTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCT 72466
| ||||| || |||||||||| | |||| |||| || ||||| || ||||| |
Sbjct 3474 GAAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTT 3533
Query 72467 ATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGT 72526
|||| || |||||||| || || | || || ||||| || || || |||||||| ||
Sbjct 3534 ATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGC 3593
Query 72527 TAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTAT 72586
|| | |||| |||||| | |||| | || ||||||||| | ||||||||||
Sbjct 3594 TAAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTA 3653
Query 72587 CATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAG 72646
| | | || || ||| | |||||||| ||| || || |||| ||||| | || |
Sbjct 3654 GTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTG 3713
Query 72647 CATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCAC 72706
| | | | ||| | | || ||| | ||||| || || |||||||||||||| |
Sbjct 3714 CTACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTC 3773
Query 72707 TAG 72709
|||
Sbjct 3774 TAG 3776
>seq25216
Length=8180
Score = 138 bits (152), Expect = 1e-27
Identities = 174/239 (73%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 72598 GGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTA 72657
|| ||| | |||||||| | | || || ||||| ||||| | || || ||| ||
Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194
Query 72658 TTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCA 72717
||| | | || ||| | ||||| || || |||||||||||||| ||||| || ||
Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134
Query 72718 GGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTC 72777
||||| |||||||||||| | || ||||| | || |||||||| || |||||||| ||
Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074
Query 72778 CATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTC 72836
|| ||| ||| |||| ||| | ||||| || || |||||||| ||||| |||||
Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC 7015
>seq8630
Length=23577
Score = 91.5 bits (100), Expect = 2e-13
Identities = 91/117 (78%), Gaps = 1/117 (1%)
Strand=Plus/Plus
Query 72892 GGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTT-GCTGCTCATGGATACTT 72950
|| || || || || ||||| || ||||| || || || || ||||||||||| || ||
Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556
Query 72951 CGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTT 73007
||| |||| |||||||| ||||| |||||||| |||||||| ||||| |||||
Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTT 7613
>seq4835
Length=43218
Score = 87.8 bits (96), Expect = 2e-12
Identities = 86/111 (77%), Gaps = 4/111 (4%)
Strand=Plus/Plus
Query 72901 TTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTA 72960
|| || ||||| || ||||| || || || || ||||||||||| || || || |||||
Sbjct 9068 TTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTTGGCAGATTC 9127
Query 72961 ATCTTCCAGTATGCATCATTCAACAACTCTCGTTC----ATTACACTTCTT 73007
|||||||| ||||| |||||||| |||||||| |||||| |||||
Sbjct 9128 ATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAATTACATTTCTT 9178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570098070373520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |