Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq5412 289 3e-73 seq8546 210 2e-49 seq59 149 7e-31 seq29420 147 2e-30 seq25216 138 1e-27 seq8630 91.5 2e-13 seq4835 87.8 2e-12 >seq5412 Length=31808 Score = 289 bits (320), Expect = 3e-73 Identities = 453/646 (70%), Gaps = 8/646 (1%) Strand=Plus/Minus Query 72328 TTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTT 72387 || ||| |||| ||||| ||||||||||| || ||||| || || || | ||||| ||| Sbjct 15236 TTTATTATAGCCTTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 15177 Query 72388 GCGGGTTCT-TTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAA 72446 || ||| ||||| || || ||||| || ||||||||||| | ||| ||| Sbjct 15176 TTTGGATCTCTTCTT-TACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGC 15118 Query 72447 CGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTA 72506 || ||||| || ||||| ||||| || |||||||| || || | || || ||||| || Sbjct 15117 TGCTATAGGTTTGCACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATA 15058 Query 72507 TAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACAT 72566 || || ||||| || || || || |||| |||||| | |||| | || ||||| Sbjct 15057 CAATGGTGGTCCATATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACAT 14998 Query 72567 GGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATA 72626 |||| | |||||||||| | | | || || ||| | |||||||| ||| || || Sbjct 14997 GGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTA 14938 Query 72627 CTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTC 72686 ||||| ||||| | | || ||| || ||| | | || ||| | ||| | || Sbjct 14937 TTCAGCCCCTGTTGCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAG 14878 Query 72687 ATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCA 72746 || ||| |||||||||| ||||| || || ||||| |||||||||||| | || ||||| Sbjct 14877 CTTTTCTAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCA 14818 Query 72747 AGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGG 72806 || || |||||||| || |||||||| || || ||| ||| ||||| ||| | |||| Sbjct 14817 GGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGA 14758 Query 72807 TGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGAC 72866 || || ||||| ||| ||||| | || || || | | ||||| || || Sbjct 14757 CGGCTACCTATTCAG------GCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAAC 14704 Query 72867 AACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAA 72926 ||||| || || | || | || || | | | || ||||| ||||| || ||||| Sbjct 14703 CACAGAAAATGAATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAA 14644 Query 72927 CATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTAT 72972 || || ||||||||||| || || || ||||||||||||| ||| Sbjct 14643 TATCGTAGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598 >seq8546 Length=31398 Score = 210 bits (232), Expect = 2e-49 Identities = 313/441 (71%), Gaps = 6/441 (1%) Strand=Plus/Minus Query 72778 CATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCA 72837 || ||| ||| ||||| ||| | ||||| || | ||||||| ||||| ||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 72838 CTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTAT 72897 | || || || | | ||||| || || ||||| || | || | || || Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 72898 AAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGA 72957 | || || ||||| || ||||| | || ||||| ||||||||||| || || || || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 72958 TTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTA 73017 || |||||||| ||||| |||||| | |||| ||| ||||| |||||| | | || Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965 Query 73018 TTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTT 73077 | |||||||| || ||||||| || | | ||||| |||| |||||||| | ||| Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905 Query 73078 AACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACA-TG 73136 ||||| ||||| ||||||||||| ||||| || | | ||| | || | | || Sbjct 12904 AACGGCTTCAATTTCAACCAATC---TGTAGTTG--ATAGTCAAGGTCGTGTAATTATTG 12850 Query 73137 GGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACA 73196 || ||| || ||||| | || |||||||| |||||||||||||||||| | ||||| || Sbjct 12849 GGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 12790 Query 73197 CAACTTCCCACTAGACCTAGC 73217 ||||||| ||||||||||| Sbjct 12789 TAACTTCCATCTAGACCTAGC 12769 >seq59 Length=339703 Score = 149 bits (164), Expect = 7e-31 Identities = 187/257 (73%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 72688 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 72747 || |||||||||||||| ||||| | || ||||| |||||||||||| | || ||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 72748 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGT 72807 || || |||||||| || |||||||| || || ||| | | ||||| ||| | ||||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 72808 GGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACA 72867 || || ||||||| ||||| ||||| | || || || | | || || || || Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 72868 ACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAAC 72927 ||||| || || | || | || || | ||| || ||||| ||||| || ||||| Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 72928 ATTGTTGCTGCTCATGG 72944 ||||| ||| ||||||| Sbjct 52549 ATTGTAGCTACTCATGG 52565 >seq29420 Length=7120 Score = 147 bits (162), Expect = 2e-30 Identities = 252/363 (69%), Gaps = 2/363 (1%) Strand=Plus/Plus Query 72348 TGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATG 72406 ||||||||| || ||||| || || || | ||||| ||| | || ||| ||||| | | Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTC-ACG 3473 Query 72407 GTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCT 72466 | ||||| || |||||||||| | |||| |||| || ||||| || ||||| | Sbjct 3474 GAAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTT 3533 Query 72467 ATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGT 72526 |||| || |||||||| || || | || || ||||| || || || |||||||| || Sbjct 3534 ATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGC 3593 Query 72527 TAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTAT 72586 || | |||| |||||| | |||| | || ||||||||| | |||||||||| Sbjct 3594 TAAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTA 3653 Query 72587 CATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAG 72646 | | | || || ||| | |||||||| ||| || || |||| ||||| | || | Sbjct 3654 GTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTG 3713 Query 72647 CATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCAC 72706 | | | | ||| | | || ||| | ||||| || || |||||||||||||| | Sbjct 3714 CTACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTC 3773 Query 72707 TAG 72709 ||| Sbjct 3774 TAG 3776 >seq25216 Length=8180 Score = 138 bits (152), Expect = 1e-27 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 72598 GGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTA 72657 || ||| | |||||||| | | || || ||||| ||||| | || || ||| || Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194 Query 72658 TTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCA 72717 ||| | | || ||| | ||||| || || |||||||||||||| ||||| || || Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134 Query 72718 GGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTC 72777 ||||| |||||||||||| | || ||||| | || |||||||| || |||||||| || Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074 Query 72778 CATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTC 72836 || ||| ||| |||| ||| | ||||| || || |||||||| ||||| ||||| Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC 7015 >seq8630 Length=23577 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/117 (78%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 72892 GGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTT-GCTGCTCATGGATACTT 72950 || || || || || ||||| || ||||| || || || || ||||||||||| || || Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 72951 CGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTT 73007 ||| |||| |||||||| ||||| |||||||| |||||||| ||||| ||||| Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTT 7613 >seq4835 Length=43218 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 4/111 (4%) Strand=Plus/Plus Query 72901 TTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTA 72960 || || ||||| || ||||| || || || || ||||||||||| || || || ||||| Sbjct 9068 TTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTTGGCAGATTC 9127 Query 72961 ATCTTCCAGTATGCATCATTCAACAACTCTCGTTC----ATTACACTTCTT 73007 |||||||| ||||| |||||||| |||||||| |||||| ||||| Sbjct 9128 ATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAATTACATTTCTT 9178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570098070373520