Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4197 174 2e-37 seq270 167 3e-35 seq5188 86.0 8e-11 >seq4197 Length=36674 Score = 174 bits (192), Expect = 2e-37 Identities = 193/254 (76%), Gaps = 5/254 (2%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| |||||||| ||||||||||||||||| ||||| | |||| | || ||| Sbjct 23720 GAGTGGATATTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGAAACCTGG 23779 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 | |||||||||||||| || || || |||||| |||||| |||||| ||| ||||| Sbjct 23780 ATCTCCTTCATGAACCTCCCAGCGAGATTCTCGAGCACGATCCCGTCGGAGGCTGCGAAG 23839 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCG---ACACCCAGTGG 869809 || || ||||| || ||||||||| ||| || | || | | |||| | | Sbjct 23840 AAGGCGAGGACATGAGAGATAAAGTGCTTCTCATCAGAAGTTAGGGTTTCCTCCCAAT-G 23898 Query 869810 ACGGTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868 |||| | || |||||| ||||||||||||||||||| |||||| |||||||| || Sbjct 23899 ACGGAGATCTTGTGAGAGGTCAACCTCCTCGGCGGTCCAGAACGAGGCTTCGGCCTTCTT 23958 Query 869869 GTACATCTCCCATA 869882 ||||||||||||| Sbjct 23959 ATACATCTCCCATA 23972 Score = 104 bits (114), Expect = 3e-16 Identities = 175/254 (69%), Gaps = 6/254 (2%) Strand=Plus/Plus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| | ||||||||||| ||||| ||||| |||| || || ||||| || || Sbjct 23435 TGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAGTCCAGGCATCAGTCCT 23494 Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293 ||||| || |||||||| || |||||||| || || ||||| ||||| || || ||| | Sbjct 23495 CGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAGATACCTTCAACGCAG 23554 Query 869294 GCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATC 869353 ||||| | | | ||||| || |||| || | || ||||| | | Sbjct 23555 GCAAAAGCAACTATGCGCTCAGCGAAGGATTCTGCGGAATC------AATCCAGCGGAGC 23608 Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCC 869413 ||||||||||| || || | || | || || || ||||||||| | ||||| ||| | Sbjct 23609 GCCCAGTCGGCTTTCTTGGTGACAGCGGGAACAGTATCGATGGCGTGGAAGAGCCGGTGC 23668 Query 869414 TTTTCGGCCGGGTC 869427 || |||| || ||| Sbjct 23669 TTCTCGGACGAGTC 23682 >seq270 Length=105985 Score = 167 bits (184), Expect = 3e-35 Identities = 215/291 (74%), Gaps = 7/291 (2%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || ||||||||||| | ||||||||||| || || ||||| | |||| | || ||| Sbjct 92092 GAATGGATGTTCTCAACTGCGATCTGGAAACCATAGAAGGCGCGAGCCTCGGAGACCTGG 92151 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 | || |||||||||| ||||| ||||||||| ||||| |||||| ||||||||| Sbjct 92152 ATATCATTCATGAACCTTCCGGCGAGGTTCTCGAGAACGATTCCGTCGGAGGCGGCGAAG 92211 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCG---ACACCCAGTGG 869809 || || |||||||| ||| || || ||||||| | | || | | |||||| | Sbjct 92212 AAGGCGAGGACGTGAGAGATGAAATGTTTCTCGTCGGTGGTTAGAGTTTCCTCCCAGT-G 92270 Query 869810 ACGG-TGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868 |||| | || | || || ||||||||||||||||||| ||||| ||||| || || Sbjct 92271 ACGGATATCTTGAGTTAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCGGCTTTCTT 92330 Query 869869 GTACATCTCCCATA-CTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGT 869918 |||||||||||| | |||| |||| |||| ||||| | | ||||||| Sbjct 92331 GTACATCTCCCAGATCTTG-GGGTATTGGATTGGGAACATGCAGAAGCGGT 92380 >seq5188 Length=107093 Score = 86.0 bits (94), Expect = 8e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||| ||| | |||||||| ||| || || || ||| | | |||||| || Sbjct 47774 GCTGCCAATTACTTGAACATCAAGAGTCTACTGGACCTCACATGCCAAACAGTGGCCGAC 47833 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 ||||||||||||||| | || ||||||||||||||||| || ||||| || Sbjct 47834 ATGATCAAGGGCAAGACACCAGAGGAGATCCGCAAGACTTTCAACATAAA 47883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6075331421257298