Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq4197 174 2e-37
seq270 167 3e-35
seq5188 86.0 8e-11
>seq4197
Length=36674
Score = 174 bits (192), Expect = 2e-37
Identities = 193/254 (76%), Gaps = 5/254 (2%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|||||||| |||||||| ||||||||||||||||| ||||| | |||| | || |||
Sbjct 23720 GAGTGGATATTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGAAACCTGG 23779
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
| |||||||||||||| || || || |||||| |||||| |||||| ||| |||||
Sbjct 23780 ATCTCCTTCATGAACCTCCCAGCGAGATTCTCGAGCACGATCCCGTCGGAGGCTGCGAAG 23839
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCG---ACACCCAGTGG 869809
|| || ||||| || ||||||||| ||| || | || | | |||| | |
Sbjct 23840 AAGGCGAGGACATGAGAGATAAAGTGCTTCTCATCAGAAGTTAGGGTTTCCTCCCAAT-G 23898
Query 869810 ACGGTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868
|||| | || |||||| ||||||||||||||||||| |||||| |||||||| ||
Sbjct 23899 ACGGAGATCTTGTGAGAGGTCAACCTCCTCGGCGGTCCAGAACGAGGCTTCGGCCTTCTT 23958
Query 869869 GTACATCTCCCATA 869882
|||||||||||||
Sbjct 23959 ATACATCTCCCATA 23972
Score = 104 bits (114), Expect = 3e-16
Identities = 175/254 (69%), Gaps = 6/254 (2%)
Strand=Plus/Plus
Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233
||| | ||||||||||| ||||| ||||| |||| || || ||||| || ||
Sbjct 23435 TGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAGTCCAGGCATCAGTCCT 23494
Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293
||||| || |||||||| || |||||||| || || ||||| ||||| || || ||| |
Sbjct 23495 CGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAGATACCTTCAACGCAG 23554
Query 869294 GCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATC 869353
||||| | | | ||||| || |||| || | || ||||| | |
Sbjct 23555 GCAAAAGCAACTATGCGCTCAGCGAAGGATTCTGCGGAATC------AATCCAGCGGAGC 23608
Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCC 869413
||||||||||| || || | || | || || || ||||||||| | ||||| ||| |
Sbjct 23609 GCCCAGTCGGCTTTCTTGGTGACAGCGGGAACAGTATCGATGGCGTGGAAGAGCCGGTGC 23668
Query 869414 TTTTCGGCCGGGTC 869427
|| |||| || |||
Sbjct 23669 TTCTCGGACGAGTC 23682
>seq270
Length=105985
Score = 167 bits (184), Expect = 3e-35
Identities = 215/291 (74%), Gaps = 7/291 (2%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|| ||||||||||| | ||||||||||| || || ||||| | |||| | || |||
Sbjct 92092 GAATGGATGTTCTCAACTGCGATCTGGAAACCATAGAAGGCGCGAGCCTCGGAGACCTGG 92151
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
| || |||||||||| ||||| ||||||||| ||||| |||||| |||||||||
Sbjct 92152 ATATCATTCATGAACCTTCCGGCGAGGTTCTCGAGAACGATTCCGTCGGAGGCGGCGAAG 92211
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCG---ACACCCAGTGG 869809
|| || |||||||| ||| || || ||||||| | | || | | |||||| |
Sbjct 92212 AAGGCGAGGACGTGAGAGATGAAATGTTTCTCGTCGGTGGTTAGAGTTTCCTCCCAGT-G 92270
Query 869810 ACGG-TGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868
|||| | || | || || ||||||||||||||||||| ||||| ||||| || ||
Sbjct 92271 ACGGATATCTTGAGTTAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCGGCTTTCTT 92330
Query 869869 GTACATCTCCCATA-CTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGT 869918
|||||||||||| | |||| |||| |||| ||||| | | |||||||
Sbjct 92331 GTACATCTCCCAGATCTTG-GGGTATTGGATTGGGAACATGCAGAAGCGGT 92380
>seq5188
Length=107093
Score = 86.0 bits (94), Expect = 8e-11
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|| ||||| ||| | |||||||| ||| || || || ||| | | |||||| ||
Sbjct 47774 GCTGCCAATTACTTGAACATCAAGAGTCTACTGGACCTCACATGCCAAACAGTGGCCGAC 47833
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295
||||||||||||||| | || ||||||||||||||||| || ||||| ||
Sbjct 47834 ATGATCAAGGGCAAGACACCAGAGGAGATCCGCAAGACTTTCAACATAAA 47883
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6075331421257298
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |