Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq9434 84.2 2e-11
seq48644 82.4 6e-11
seq45117 82.4 6e-11
seq35801 82.4 6e-11
>seq9434
Length=50679
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329
||||| || || || ||||| |||| ||||| || || ||| |||| || || ||
Sbjct 46077 ATGCAGATCTTCGTGAAAACCCTAACAGGCAAGACAATCACCCTCGAGGTTGAAAGCTCT 46018
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
||| || | | | | |||||| ||||| ||||| || || | ||| ||
Sbjct 46017 GAC---ACAATTGACAACGTAAAAGCTAAGATCCAAGACAAGGAGGGAATTCCCCCTGAC 45961
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|||||||||||||| | ||| || || || || ||||||| || || | || ||||||
Sbjct 45960 CAACAAAGACTTATCTTTGCCGGAAAGCAACTAGAGGATGGAAGGACCCTTGCTGATTAC 45901
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482
|| ||||| ||||| || || | ||| |||||
Sbjct 45900 AATATTCAGAAAGAGTCCACCCTCCACTTGGTG 45868
>seq48644
Length=2856
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329
|| ||||| || ||||| ||||| ||||||| || || || ||| | || || ||
Sbjct 2063 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2004
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
||| || ||| | | || ||| |||||| ||||| |||||| | || |||
Sbjct 2003 TCCGACACCATCGACAATGTGAAAGCGAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 1944
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| || | || || | || || |||||||| ||||| | | || | || || |||
Sbjct 1943 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 1884
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482
||||||||||| || ||||| | ||| |||||
Sbjct 1883 AACATTCAAAAGGAGTCTACCCTCCACCTGGTG 1851
>seq45117
Length=3449
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329
|| ||||| || ||||| ||||| ||||||| || || || ||| | || || ||
Sbjct 2656 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2597
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
||| || ||| | | || ||| |||||| ||||| |||||| | || |||
Sbjct 2596 TCCGACACCATCGACAATGTGAAAGCGAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 2537
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| || | || || | || || |||||||| ||||| | | || | || || |||
Sbjct 2536 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 2477
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482
||||||||||| || ||||| | ||| |||||
Sbjct 2476 AACATTCAAAAGGAGTCTACCCTCCACCTGGTG 2444
>seq35801
Length=5147
Score = 82.4 bits (90), Expect = 6e-11
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446
|| |||||||| || || | ||| ||||| || || ||||||| | | ||| | ||||||
Sbjct 16 GACCAACAAAGGCTGATCTTTGCTGGTAAGCAACTCGAGGATGGCCGTACATTAGCGGAT 75
Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501
||||||||||| || || ||||| | ||| | ||||| | || || || ||||
Sbjct 76 TACAACATTCAGAAGGAGTCTACACTCCACCTTGTGTTGCGTCTTCGTGGTGGAA 130
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 410891418075842
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |