Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq270 136 6e-26 seq4197 123 4e-22 >seq270 Length=105985 Score = 136 bits (150), Expect = 6e-26 Identities = 172/233 (74%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| || |||| || |||||||| | ||||| |||||||| ||||| ||| Sbjct 92137 GCCTCGGAGACCTGGATATCATTCATGAACCTTCCGGCGAGGTTCTCGAGAACGATTCCG 92196 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||| |||||||||||||| ||| || || ||||||| | | || Sbjct 92197 TCGGAGGCGGCGAAGAAGGCGAGGACGTGAGAGATGAAATGTTTCTCGTCGGTGGTTAGA 92256 Query 796270 GAGACC---CAGTGGACCG-TGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGA 796325 | || ||||| || | | || || |||||||||||||||||||| ||||| Sbjct 92257 GTTTCCTCCCAGTG-ACGGATATCTTGAGTTAGATCGACCTCCTCGGCGGTCCAGAAGGA 92315 Query 796326 GGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 ||| ||||| || |||||||||||||| ||| |||| |||| ||||||| Sbjct 92316 GGCTTCGGCTTTCTTGTACATCTCCCAGATCTTGGGGTATTGGATTGGGAACA 92368 Score = 118 bits (130), Expect = 2e-20 Identities = 199/286 (70%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || ||||| || ||||| || || ||||| || | ||| ||||| || || ||||| ||| Sbjct 91852 CCTGGCATCAGACCGCGTTTTTTTAGCCAGAATACGGCGCAGAAGCTTCCGGAGAAGAAG 91911 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 ||||| || ||| || || |||||| |||||||| || | || | || Sbjct 91912 ATGCCTTCCACGCAAGCGAAAGCGACGATTCGCTCGGCGAAGGATTCGGAGGAATC---- 91967 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| || ||||||| ||||| || | || | || | ||||| || ||| Sbjct 91968 --GATCCATCGCAAGGCCCACTGCGCCTTCTTTGTGACGGCAGGGATGGTGTCAATTGCG 92025 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAG-GTGTCGATGAGGAGCGAGTA 794618 | |||||| ||| ||||||| | | |||| || ||| || | |||||||| ||| Sbjct 92026 TGGAAGAGGCGGTGCTTCTCGTCGGAGTCCC-GAATTAGCGTTTGAATGAGGAGGCTGTA 92084 Query 794619 GGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 |||| || |||||||| || | ||||||||||| ||||| ||| Sbjct 92085 CATCTCAGAATGGATGTTCTCAACTGCGATCTGGAAACCATAGAAG 92130 >seq4197 Length=36674 Score = 123 bits (136), Expect = 4e-22 Identities = 169/233 (73%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| || |||| |||||||||||| | || || || ||||| |||||| ||| Sbjct 23765 GCCTCGGAAACCTGGATCTCCTTCATGAACCTCCCAGCGAGATTCTCGAGCACGATCCCG 23824 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||| ||||| ||||||||||| || ||||||||| ||| || | || Sbjct 23825 TCGGAGGCTGCGAAGAAGGCGAGGACATGAGAGATAAAGTGCTTCTCATCAGAAGTTAGG 23884 Query 796270 GAGACC---CAGTGGACCGTG-TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGA 796325 | || || || || | | || |||||| ||||||||||||||||| || || Sbjct 23885 GTTTCCTCCCAATG-ACGGAGATCTTGTGAGAGGTCAACCTCCTCGGCGGTCCAGAACGA 23943 Query 796326 GGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 ||| |||||||| || |||||||||||||| || | || ||| ||||||| Sbjct 23944 GGCTTCGGCCTTCTTATACATCTCCCATATGCGAGGATACTTGATCGGGAACA 23996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7875016258403766