Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq270 136 6e-26
seq4197 123 4e-22
>seq270
Length=105985
Score = 136 bits (150), Expect = 6e-26
Identities = 172/233 (74%), Gaps = 5/233 (2%)
Strand=Plus/Plus
Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209
||||||| || |||| || |||||||| | ||||| |||||||| ||||| |||
Sbjct 92137 GCCTCGGAGACCTGGATATCATTCATGAACCTTCCGGCGAGGTTCTCGAGAACGATTCCG 92196
Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269
||| ||||||||| |||||||||||||| ||| || || ||||||| | | ||
Sbjct 92197 TCGGAGGCGGCGAAGAAGGCGAGGACGTGAGAGATGAAATGTTTCTCGTCGGTGGTTAGA 92256
Query 796270 GAGACC---CAGTGGACCG-TGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGA 796325
| || ||||| || | | || || |||||||||||||||||||| |||||
Sbjct 92257 GTTTCCTCCCAGTG-ACGGATATCTTGAGTTAGATCGACCTCCTCGGCGGTCCAGAAGGA 92315
Query 796326 GGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378
||| ||||| || |||||||||||||| ||| |||| |||| |||||||
Sbjct 92316 GGCTTCGGCTTTCTTGTACATCTCCCAGATCTTGGGGTATTGGATTGGGAACA 92368
Score = 118 bits (130), Expect = 2e-20
Identities = 199/286 (70%), Gaps = 8/286 (3%)
Strand=Plus/Plus
Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439
|| ||||| || ||||| || || ||||| || | ||| ||||| || || ||||| |||
Sbjct 91852 CCTGGCATCAGACCGCGTTTTTTTAGCCAGAATACGGCGCAGAAGCTTCCGGAGAAGAAG 91911
Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499
||||| || ||| || || |||||| |||||||| || | || | ||
Sbjct 91912 ATGCCTTCCACGCAAGCGAAAGCGACGATTCGCTCGGCGAAGGATTCGGAGGAATC---- 91967
Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559
|||||| || ||||||| ||||| || | || | || | ||||| || |||
Sbjct 91968 --GATCCATCGCAAGGCCCACTGCGCCTTCTTTGTGACGGCAGGGATGGTGTCAATTGCG 92025
Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAG-GTGTCGATGAGGAGCGAGTA 794618
| |||||| ||| ||||||| | | |||| || ||| || | |||||||| |||
Sbjct 92026 TGGAAGAGGCGGTGCTTCTCGTCGGAGTCCC-GAATTAGCGTTTGAATGAGGAGGCTGTA 92084
Query 794619 GGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664
|||| || |||||||| || | ||||||||||| ||||| |||
Sbjct 92085 CATCTCAGAATGGATGTTCTCAACTGCGATCTGGAAACCATAGAAG 92130
>seq4197
Length=36674
Score = 123 bits (136), Expect = 4e-22
Identities = 169/233 (73%), Gaps = 5/233 (2%)
Strand=Plus/Plus
Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209
||||||| || |||| |||||||||||| | || || || ||||| |||||| |||
Sbjct 23765 GCCTCGGAAACCTGGATCTCCTTCATGAACCTCCCAGCGAGATTCTCGAGCACGATCCCG 23824
Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269
||| ||| ||||| ||||||||||| || ||||||||| ||| || | ||
Sbjct 23825 TCGGAGGCTGCGAAGAAGGCGAGGACATGAGAGATAAAGTGCTTCTCATCAGAAGTTAGG 23884
Query 796270 GAGACC---CAGTGGACCGTG-TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGA 796325
| || || || || | | || |||||| ||||||||||||||||| || ||
Sbjct 23885 GTTTCCTCCCAATG-ACGGAGATCTTGTGAGAGGTCAACCTCCTCGGCGGTCCAGAACGA 23943
Query 796326 GGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378
||| |||||||| || |||||||||||||| || | || ||| |||||||
Sbjct 23944 GGCTTCGGCCTTCTTATACATCTCCCATATGCGAGGATACTTGATCGGGAACA 23996
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7875016258403766
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |