Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq87 134 9e-27 seq9434 127 1e-24 seq4209 107 1e-18 seq10588 100 2e-16 seq184 100 2e-16 seq35801 86.0 4e-12 seq1982 82.4 5e-11 >seq87 Length=177581 Score = 134 bits (148), Expect = 9e-27 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| ||||||||||||||||||||| | || | ||| |||| Sbjct 54454 AGGACGAGGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCTGCGAGAGTACGCCCATCT 54513 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || || ||||| |||| |||||||||| |||| | |||||||| || Sbjct 54514 TCGAGTTGCTTACCCGCAAAGATGAGTCTTTGCTGGTCTGGCGGGATACCCTCCTTATCT 54573 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | |||||| ||||| | || | || | ||| || |||| ||||| ||| Sbjct 54574 TGGATTTTTGCCTTGACATTGTCAATGGTGTCTGAGCTCTCAACTTCAAGAGTTATTGTC 54633 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || |||||||| || |||||||| ||||| Sbjct 54634 TTACCAGTGAGGGTTTTCACAAAGATTTGCAT 54665 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| |||| |||| ||| ||||| |||||||| || | ||| | | |||| Sbjct 54910 AGAACCAAATGAAGGGTGGACTCTTTCTGGATGTTATAATCAGCAAGGGTCCTTCCATCT 54969 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| ||||| ||||||| || ||||||||| | || | |||||||| || Sbjct 54970 TCGAGTTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCT 55029 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||||| | || | ||| | ||| || || | || |||||| Sbjct 55030 TGAATCTTAGCTTTGACGTTGTCAATTGTGTCAGAGCTCTCAACTTCCAACGTAATGGTC 55089 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| ||||| || || || |||||||| Sbjct 55090 TTTCCCGTAAGGGTTTTGACGAAAATCTGCAT 55121 Score = 113 bits (124), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||| ||||||||| || |||||||| | |||| | | | || Sbjct 55594 AGAACCAGGTGGAGTGTGGACTCCTTCTGGATATTATAGTCAGCTAGGGTTCTTCCGTCT 55653 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||||||||| |||||||| | |||||| ||| | || | ||||||||| || Sbjct 55654 TCAAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGATCTGGAGGAATCCCCTCCTTATCT 55713 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | ||||| || || || | ||||| ||| | ||||| |||| || || Sbjct 55714 TGAATTTTAGCCTTAAC--AT--TGTCGATTGTGTCAGAGCTTTCGACCTCAAGAGTGAT 55769 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || || || || || || ||||||||||| Sbjct 55770 GGTCTTACCTGTAAGTGTTTTCACGAAGATCTGCAT 55805 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || ||||| |||||||| || | ||| | | |||| || |||||||| || || ||| Sbjct 55159 TCTTTCTGGATGTTATAATCAGCAAGGGTCCTTCCATCTTCGAGTTGCTTGCCAGCAAAG 55218 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || ||||||||| | || | |||||||| || | || || ||||||| Sbjct 55219 ATCAATCTCTGCTGGTCTGGAGGAATTCCCTCCTTATCTTGAATCTTAGCTTTGACGTTG 55278 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | ||| | ||| || |||| || || ||||| || || | ||||| ||| Sbjct 55279 TCAATGGTGTCAGAGCTCTCAACTTCAAGAGTAATAGTCTTGCCAGTCAAAGTCTTCACA 55338 Query 34967 AAGATCTGCAT 34977 ||||||||||| Sbjct 55339 AAGATCTGCAT 55349 >seq9434 Length=50679 Score = 127 bits (140), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| |||| |||||||||||||||||| || | ||| |||| |||| Sbjct 44726 AGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCAGCTAGAGTGCGGCCATCC 44785 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||||||||||||| || |||||||| || |||||||| | || | ||| |||||||| Sbjct 44786 TCCAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATCCCTTCCTTGTCC 44845 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | ||||| || || || | ||||| ||| | || || || | ||| || Sbjct 44846 TGAATTTTAGCCTTAAC--AT--TGTCGATTGTATCAGAGCTTTCAACCTCCAAGGTGAT 44901 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||| || | ||||| ||||| || ||||| Sbjct 44902 GGTTTTTCCAGTCAATGTCTTCACAAATATTTGCAT 44937 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | |||| |||||||| |||||||| || | ||| | | |||| Sbjct 45638 AGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTATAATCTGCAAGGGTCCTTCCATCT 45697 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| ||||| ||||||| | ||||| ||| | || | ||||||||||| Sbjct 45698 TCAAGTTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCCTCCTTGTCT 45757 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | |||||| |||| || || ||| Sbjct 45758 TGAATCTTAGCTTTGACATTGTCAATTGTGTCTGAGCTCTCGACTTCAAGTGTGATAGTC 45817 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || ||||||||||| || |||||||| Sbjct 45818 TTGCCAGTTAGGGTCTTTACGAATATCTGCAT 45849 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | |||| ||| |||||||| || || || | ||| | | |||| Sbjct 45866 AGCACCAAGTGGAGGGTGGACTCTTTCTGAATATTGTAATCAGCAAGGGTCCTTCCATCC 45925 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||||||||| ||||| |||| ||| ||||| | || | ||||||||||| Sbjct 45926 TCTAGTTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCAGGGGGAATTCCCTCCTTGTCT 45985 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||| ||| | || | ||| | || || || | ||| || ||| Sbjct 45986 TGGATCTTAGCTTTTACGTTGTCAATTGTGTCAGAGCTTTCAACCTCGAGGGTGATTGTC 46045 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || ||||| || || ||||||||||| Sbjct 46046 TTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 46077 >seq4209 Length=73032 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || ||||||||| ||||||||||| | ||| | | |||| Sbjct 22 AGAACCAGGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCAGCAAGGGTTCTACCATCC 81 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| || || ||||||||| | || | ||| |||||||| Sbjct 82 TCGAGCTGCTTGCCCGCAAAGATGAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTGTCT 141 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| |||| | || | ||| || || | |||||||||| Sbjct 142 TGGATCTTGGCCTTGACATTGTCTATGGTGTCTGAGCTCTCAACCTCTAGGGTTATGGTC 201 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | || || |||||||||||||| Sbjct 202 TTTCCGGTCAATGTTTTCACAAAGATCTGCAT 233 >seq10588 Length=20159 Score = 100 bits (110), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| ||| |||||||||||| || || || | || | || |||| Sbjct 1040 AGGACAAGGTGAAGGGTAGACTCCTTCTGAATATTGTAATCAGCAAGAGTACGGCCATCC 1099 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| || ||||||| || || |||||| | || | ||| |||||||| Sbjct 1100 TCAAGCTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATCCCTTCCTTGTCC 1159 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || || || || |||| || ||| | ||| || || | ||| || Sbjct 1160 TGGATCTTAGCCTTCAC--AT--TATCAATAGTATCAGAGCTCTCAACCTCCAAGGTGAT 1215 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || || | ||||| |||||||||||||| Sbjct 1216 GGTCTTGCCAGTCAATGTCTTAACAAAGATCTGCAT 1251 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || |||| |||| ||||||||| || || || || | |||| | | |||| Sbjct 1268 AGCACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCTAGGGTTCTTCCATCC 1327 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| || ||||| || | |||||||| | || | ||||||||||| Sbjct 1328 TCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGGGGAATACCCTCCTTGTCC 1387 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || | ||| || || | ||| || ||| Sbjct 1388 TGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCAACCTCCAAGGTGATAGTC 1447 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| ||||| |||||||||||||| Sbjct 1448 TTTCCAGTGAGCGTCTTGACAAAGATCTGCAT 1479 >seq184 Length=120086 Score = 100 bits (110), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || |||||||| || || || || | ||| | || |||| Sbjct 5438 AGCACCAGGTGGAGCGTCGATTCCTTCTGGATATTGTAATCGGCGAGGGTTCGGCCATCC 5379 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || |||||||||||| | || | || |||||||| Sbjct 5378 TCTAGCTGCTTACCGGCGAAGATTAGCCGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCC 5319 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || ||| || || || | ||||| || || ||||| || | |||||| Sbjct 5318 TGGATCTTTGCCTTCAC--AT--TGTCGATGGTGTCGGAGGATTCGACCTCGAGGGTTAT 5263 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| ||||| || || || |||||||| Sbjct 5262 CGTCTTACCCGTCAGGGTTTTGACGAAAATCTGCAT 5227 >seq35801 Length=5147 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| |||||||||||||| || || | | | || |||| Sbjct 341 AGAACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGCCAATGTCCGTCCATCC 282 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||||| | ||||||||| |||| | |||||||||||| Sbjct 281 TCGAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGCGGAATCCCCTCCTTGTCC 222 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| |||| | || | || || || | ||| |||||| Sbjct 221 TGAATCTTCGCCTTGACATTATCTATGGTGTCCGAGCTTTCAACCTCGAGGGTGATGGTC 162 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||| || || |||||||| Sbjct 161 TTCCCTGTCAAAGTCTTGACGAATATCTGCAT 130 >seq1982 Length=56187 Score = 82.4 bits (90), Expect = 5e-11 Identities = 115/159 (72%), Gaps = 8/159 (5%) Strand=Plus/Minus Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || || ||||| ||||||||||| ||||| |||||||| | || | ||||||||| Sbjct 32273 TCTTCGAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGTGGGATTCCCTCCTTG 32214 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGT 34938 || | || || || || || | ||||| || || ||| || || | ||| Sbjct 32213 TCCTGGATCTTGGCCTTCAC--AT--TGTCGATGGTGTCGGAGGACTCAACCTCGAGGGT 32158 Query 34939 TATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||| ||||| ||||| || || ||||||||||| Sbjct 32157 TATCGTCTTCCCCGTAAGGGTTTTCACGAAGATCTGCAT 32119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324154291740686