Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq48644 91.5 1e-13 seq45117 91.5 1e-13 seq87 84.2 2e-11 >seq48644 Length=2856 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || ||||| ||||| |||| || || || || ||| | || || || Sbjct 2063 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2004 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| || ||| | | || ||| ||||| || || |||||| | || ||| Sbjct 2003 TCCGACACCATCGACAATGTGAAAGCGAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 1944 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || || |||||||| ||||||| || | || |||||| Sbjct 1943 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 1884 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||||||||||||||||| | ||| ||||| Sbjct 1883 AACATTCAAAAGGAGTCTACCCTCCACCTGGTG 1851 >seq45117 Length=3449 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || ||||| ||||| |||| || || || || ||| | || || || Sbjct 2656 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2597 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| || ||| | | || ||| ||||| || || |||||| | || ||| Sbjct 2596 TCCGACACCATCGACAATGTGAAAGCGAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 2537 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || || |||||||| ||||||| || | || |||||| Sbjct 2536 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 2477 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||||||||||||||||| | ||| ||||| Sbjct 2476 AACATTCAAAAGGAGTCTACCCTCCACCTGGTG 2444 >seq87 Length=177581 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| || || || | || || || |||||||| | ||| |||| ||| | Sbjct 54893 ATGCAGATTTTCGTGAAGACCCTGACCGGAAAGACCATTACATTGGAAGTGGAGAGCTCG 54834 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || |||||| |||||||| || | || ||||| Sbjct 54833 -GACACAATTGACAATGTGAAGGCGAAGATTCAGGATAAAGAGGGAATTCCACCAGATCA 54775 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| ||| || || ||||| || || | | ||| |||| || || || Sbjct 54774 GCAGAGGTTGATTTTTGCAGGGAAGCAGCTTGAAGATGGAAGGACATTGGCAGATTATAA 54715 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||||||| || | ||| |||| Sbjct 54714 CATTCAAAAGGAGTCAACTCTCCACCTGGT 54685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396992585024266