Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq9434 96.9 5e-15
seq87 87.8 3e-12
>seq9434
Length=50679
Score = 96.9 bits (106), Expect = 5e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||| | ||||| ||||||| || ||||| || | || || ||| |
Sbjct 46076 TGCAGATCTTCGTGAAAACCCTAACAGGCAAGACAATCACCCTCGAGGTTGAAAGCTCTG 46017
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | || |||||| ||| || ||| || || || ||||| || || ||||
Sbjct 46016 ACACAATTGACAACGTAAAAGCTAAGATCCAAGACAAGGAGGGAATTCCCCCTGACCAAC 45957
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
||||||| || ||||| || || ||| |||| ||| || || | | ||||| ||||
Sbjct 45956 AAAGACTTATCTTTGCCGGAAAGCAACTAGAGGATGGAAGGACCCTTGCTGATTACAATA 45897
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259
| || ||||| || || |||| || || | || | ||||| ||||
Sbjct 45896 TTCAGAAAGAGTCCACCCTCCACTTGGTGCTTCGTCTCAGAGGTGGTA 45849
Score = 84.2 bits (92), Expect = 3e-11
Identities = 136/196 (69%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | ||||| | || || ||||| || ||| |||| || || | |
Sbjct 45164 TGCAGATTTTTGTTAAAACCCTGACTGGGAAAACCATAACTCTTGAGGTCGAGAGTTCAG 45105
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| |||||| | ||||| || ||||| ||| ||||||||| || ||||| || || |
Sbjct 45104 ACACTATTGACAATGTCAAGGCAAAAATCCAAGATAAAGAAGGTATCCCACCTGACCAGC 45045
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|||||||||| ||||| || || ||| | || ||| | || || | || || ||||
Sbjct 45044 AAAGACTCATCTTTGCCGGGAAGCAACTCGAAGATGGGCGTACACTAGCTGACTACAATA 44985
Query 146212 TACAAAAAGAATCGAC 146227
| || || || || ||
Sbjct 44984 TCCAGAAGGAGTCTAC 44969
>seq87
Length=177581
Score = 87.8 bits (96), Expect = 3e-12
Identities = 144/208 (69%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | || || |||| || || || || || | || || || ||
Sbjct 55576 TGCAAATCTTTGTCAAGACCCTAACTGGCAAGACGATCACCCTCGAAGTTGAGAGCTCCG 55517
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | || ||||| ||| ||||| || ||||||||||| || || ||||
Sbjct 55516 ACACAATTGACAACGTAAAGGCTAAGATACAGGACAAGGAAGGCATTCCCCCTGACCAAC 55457
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || ||||| ||||| || || ||||| || ||| | | || | ||||||||||||
Sbjct 55456 AGAGGCTCATCTTTGCCGGGAAGCAATTGGAAGATGGTCGCACACTTGCAGATTATAATA 55397
Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239
| || || ||||| || |||| || ||
Sbjct 55396 TCCAGAAGGAATCCACCCTCCACTTGGT 55369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 782357482754480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |