Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq5412 325 4e-84 seq8546 203 4e-47 seq29420 183 3e-41 seq25216 161 1e-34 seq59 141 1e-28 >seq5412 Length=31808 Score = 325 bits (360), Expect = 4e-84 Identities = 491/693 (71%), Gaps = 10/693 (1%) Strand=Plus/Minus Query 157097 GGTTCGGTGTGCTTATGATTCCAACATTGCTTGCAGCAACTATCTGC-TTCATTGTTGCA 157155 |||| || || | |||||||| || || | | ||||| ||| | || ||| | || Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225 Query 157156 TTCGTAGCAGCACCTCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTC 157215 ||| | || || ||||| || ||||| || |||||||| ||||| ||| ||| ||||| Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165 Query 157216 ATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTT 157275 | || || ||||| || ||||||||||| || ||| ||| || || ||| | Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105 Query 157276 CACTTCTACCCCATCTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCT 157335 ||||| || || || |||||||| ||||| ||||||| ||| | ||||| |||||||| Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045 Query 157336 TTCCAACTGGTAGTCTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGG 157395 | | || | || ||||||||| | | || | | || ||||| ||||||||| Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985 Query 157396 GAACTTTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTC 157455 |||||| || |||| | ||||||||||| ||||| |||||| || || || || || Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925 Query 157456 GCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCT 157515 || |||| | ||| || ||| | |||| || | ||| |||| || || ||| | Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865 Query 157516 ATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAAT 157575 |||||||| || || ||||||||||| |||| ||| | || |||||||| |||||||| Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805 Query 157576 ATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTC 157635 || |||||||| || || |||||| | ||||| ||||| ||||||| || | | ||| Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745 Query 157636 TCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAAACAGA 157694 | ||| || | | || || | | | ||| || | ||||| || |||| || Sbjct 14744 ------AGGCATGGTTCTTTGGTAACCT-CGAGTTTGATCAGGGAAACCACAGAAAATGA 14692 Query 157695 GTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGC 157754 || || | ||||||| | | |||||||| |||||||| || || ||||| ||||| Sbjct 14691 ATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGC 14632 Query 157755 ACACGGTTACTTCGGTCGCCTGATCTTCCAATA 157787 || ||||| || || || | ||||||||||| Sbjct 14631 TCATGGTTATTTTGGCCGATTAATCTTCCAATA 14599 Score = 102 bits (112), Expect = 9e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 157901 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATG 157960 |||| |||||||| || | ||||| |||| |||||||| | || || ||||| ||| Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537 Query 157961 TCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 158020 | | |||||| || ||||||||||||||||||||||| ||||| || | ||||||| Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477 Query 158021 CACTGGATCTTGCTGC 158036 | || || || || || Sbjct 14476 CTCTCGACCTAGCAGC 14461 >seq8546 Length=31398 Score = 203 bits (224), Expect = 4e-47 Identities = 316/447 (71%), Gaps = 10/447 (2%) Strand=Plus/Minus Query 157594 CACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGT 157653 |||||| | ||||| ||||| |||||||| || || | ||| || |||||| || | Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 157654 CTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAAACAGAGTCACAGAACTATGGTTA 157712 | || || || | | ||| || | ||||| || |||| | || || | ||||| Sbjct 13144 TTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTA 13086 Query 157713 CAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTCGGTCG 157772 || || |||||||| || || || | || || || ||||| || ||||| || || || Sbjct 13085 CAGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCG 13026 Query 157773 CCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCAC--TTCTTCCTCGCC 157830 | ||||||||||| ||| |||||| | | |||| || |||||| | | Sbjct 13025 ATTCATCTTCCAATATGCTAGTTTCAACGATTCTC--ATTCTTTACATTTCTTCTTAGTT 12968 Query 157831 GCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAAC 157890 || |||||||| || || || ||||| ||| | | || | || || |||||||| | | Sbjct 12967 GCTTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATC 12908 Query 157891 CTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACC 157950 || ||||| ||||| |||||||| || | ||||| |||| |||||||| | | Sbjct 12907 CTAAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAT---- 12852 Query 157951 TGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCA 158010 ||||| ||| | | ||||||||| ||||||||||||||||||||||| ||||| || Sbjct 12851 TGGGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 12792 Query 158011 CACAACTTCCCACTGGATCTTGCTGCT 158037 || ||||||| || || || |||||| Sbjct 12791 CATAACTTCCATCTAGACCTAGCTGCT 12765 >seq29420 Length=7120 Score = 183 bits (202), Expect = 3e-41 Identities = 256/359 (71%), Gaps = 0/359 (0%) Strand=Plus/Plus Query 157165 GCACCTCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGC 157224 || ||||| || ||||| || |||||||| ||||| ||| |||| ||||| | | || Sbjct 3416 GCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGGA 3475 Query 157225 AACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTAC 157284 ||||| || |||||||||| || |||| |||| || || ||| | ||||| || Sbjct 3476 AACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTAT 3535 Query 157285 CCCATCTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTG 157344 || || |||||||| ||||| ||||||| ||| | ||||| |||||||||| | || Sbjct 3536 CCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTA 3595 Query 157345 GTAGTCTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCT 157404 || || |||||| | | || | | || ||||| ||||||||||||||| | Sbjct 3596 AATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGT 3655 Query 157405 TACCGTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCG 157464 | |||| | ||||||||||| ||||| |||||| || || | || || || ||||| Sbjct 3656 TTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGCT 3715 Query 157465 AGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCT 157523 | | | | ||| | |||| || | |||||||| || || |||| ||||||||| Sbjct 3716 ACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774 >seq25216 Length=8180 Score = 161 bits (178), Expect = 1e-34 Identities = 179/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 157411 TTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCA 157470 || ||||||||||| ||||| | |||| || || || || || || ||||| | ||| Sbjct 7256 TTTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCT 7197 Query 157471 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 157530 || ||| | |||| || | |||||||| || || |||| ||||||||| || || Sbjct 7196 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 7137 Query 157531 TCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCG 157590 ||||||||||| |||| ||| | || |||||| | |||||||| || |||||||| || Sbjct 7136 TCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCA 7077 Query 157591 TTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGG 157649 || |||||| | ||||| | ||| |||||||| || || | ||| ||||||||| || Sbjct 7076 TTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 7018 >seq59 Length=339703 Score = 141 bits (156), Expect = 1e-28 Identities = 189/260 (73%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 157504 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAG 157563 || || |||| ||||||||| || | ||||||||||| |||| ||| | || ||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 157564 GCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGT 157623 || |||||||| || |||||||| || || |||||| | |||| ||||| |||||||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 157624 GGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTG-TTCGTGAAAC 157682 || || | ||| || |||||| || | | || || | | | ||| || | ||||| Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCT-CGAGTTTGATTAGGGAAAC 52487 Query 157683 AACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAA 157742 || |||| || || || | ||||||| ||| |||||||| |||||||| || || Sbjct 52488 CACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAA 52547 Query 157743 CATCGTTGCTGCACACGGTT 157762 || || ||| | || |||| Sbjct 52548 TATTGTAGCTACTCATGGTT 52567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542631790303520