Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_023584.1
Length=170438
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 325 4e-84
seq8546 203 4e-47
seq29420 183 3e-41
seq25216 161 1e-34
seq59 141 1e-28
>seq5412
Length=31808
Score = 325 bits (360), Expect = 4e-84
Identities = 491/693 (71%), Gaps = 10/693 (1%)
Strand=Plus/Minus
Query 157097 GGTTCGGTGTGCTTATGATTCCAACATTGCTTGCAGCAACTATCTGC-TTCATTGTTGCA 157155
|||| || || | |||||||| || || | | ||||| ||| | || ||| | ||
Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225
Query 157156 TTCGTAGCAGCACCTCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTC 157215
||| | || || ||||| || ||||| || |||||||| ||||| ||| ||| |||||
Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165
Query 157216 ATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTT 157275
| || || ||||| || ||||||||||| || ||| ||| || || ||| |
Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105
Query 157276 CACTTCTACCCCATCTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCT 157335
||||| || || || |||||||| ||||| ||||||| ||| | ||||| ||||||||
Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045
Query 157336 TTCCAACTGGTAGTCTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGG 157395
| | || | || ||||||||| | | || | | || ||||| |||||||||
Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985
Query 157396 GAACTTTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTC 157455
|||||| || |||| | ||||||||||| ||||| |||||| || || || || ||
Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925
Query 157456 GCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCT 157515
|| |||| | ||| || ||| | |||| || | ||| |||| || || ||| |
Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865
Query 157516 ATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAAT 157575
|||||||| || || ||||||||||| |||| ||| | || |||||||| ||||||||
Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805
Query 157576 ATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTC 157635
|| |||||||| || || |||||| | ||||| ||||| ||||||| || | | |||
Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745
Query 157636 TCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAAACAGA 157694
| ||| || | | || || | | | ||| || | ||||| || |||| ||
Sbjct 14744 ------AGGCATGGTTCTTTGGTAACCT-CGAGTTTGATCAGGGAAACCACAGAAAATGA 14692
Query 157695 GTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGC 157754
|| || | ||||||| | | |||||||| |||||||| || || ||||| |||||
Sbjct 14691 ATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGC 14632
Query 157755 ACACGGTTACTTCGGTCGCCTGATCTTCCAATA 157787
|| ||||| || || || | |||||||||||
Sbjct 14631 TCATGGTTATTTTGGCCGATTAATCTTCCAATA 14599
Score = 102 bits (112), Expect = 9e-17
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 157901 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATG 157960
|||| |||||||| || | ||||| |||| |||||||| | || || ||||| |||
Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537
Query 157961 TCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 158020
| | |||||| || ||||||||||||||||||||||| ||||| || | |||||||
Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477
Query 158021 CACTGGATCTTGCTGC 158036
| || || || || ||
Sbjct 14476 CTCTCGACCTAGCAGC 14461
>seq8546
Length=31398
Score = 203 bits (224), Expect = 4e-47
Identities = 316/447 (71%), Gaps = 10/447 (2%)
Strand=Plus/Minus
Query 157594 CACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGT 157653
|||||| | ||||| ||||| |||||||| || || | ||| || |||||| || |
Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145
Query 157654 CTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAAACAGAGTCACAGAACTATGGTTA 157712
| || || || | | ||| || | ||||| || |||| | || || | |||||
Sbjct 13144 TTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTA 13086
Query 157713 CAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTCGGTCG 157772
|| || |||||||| || || || | || || || ||||| || ||||| || || ||
Sbjct 13085 CAGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCG 13026
Query 157773 CCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCAC--TTCTTCCTCGCC 157830
| ||||||||||| ||| |||||| | | |||| || |||||| | |
Sbjct 13025 ATTCATCTTCCAATATGCTAGTTTCAACGATTCTC--ATTCTTTACATTTCTTCTTAGTT 12968
Query 157831 GCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAAC 157890
|| |||||||| || || || ||||| ||| | | || | || || |||||||| | |
Sbjct 12967 GCTTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATC 12908
Query 157891 CTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACC 157950
|| ||||| ||||| |||||||| || | ||||| |||| |||||||| | |
Sbjct 12907 CTAAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAT---- 12852
Query 157951 TGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCA 158010
||||| ||| | | ||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 12851 TGGGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 12792
Query 158011 CACAACTTCCCACTGGATCTTGCTGCT 158037
|| ||||||| || || || ||||||
Sbjct 12791 CATAACTTCCATCTAGACCTAGCTGCT 12765
>seq29420
Length=7120
Score = 183 bits (202), Expect = 3e-41
Identities = 256/359 (71%), Gaps = 0/359 (0%)
Strand=Plus/Plus
Query 157165 GCACCTCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGC 157224
|| ||||| || ||||| || |||||||| ||||| ||| |||| ||||| | | ||
Sbjct 3416 GCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGGA 3475
Query 157225 AACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTAC 157284
||||| || |||||||||| || |||| |||| || || ||| | ||||| ||
Sbjct 3476 AACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTAT 3535
Query 157285 CCCATCTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTG 157344
|| || |||||||| ||||| ||||||| ||| | ||||| |||||||||| | ||
Sbjct 3536 CCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTA 3595
Query 157345 GTAGTCTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCT 157404
|| || |||||| | | || | | || ||||| ||||||||||||||| |
Sbjct 3596 AATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGT 3655
Query 157405 TACCGTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCG 157464
| |||| | ||||||||||| ||||| |||||| || || | || || || |||||
Sbjct 3656 TTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGCT 3715
Query 157465 AGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCT 157523
| | | | ||| | |||| || | |||||||| || || |||| |||||||||
Sbjct 3716 ACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774
>seq25216
Length=8180
Score = 161 bits (178), Expect = 1e-34
Identities = 179/239 (75%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 157411 TTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCA 157470
|| ||||||||||| ||||| | |||| || || || || || || ||||| | |||
Sbjct 7256 TTTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCT 7197
Query 157471 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 157530
|| ||| | |||| || | |||||||| || || |||| ||||||||| || ||
Sbjct 7196 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 7137
Query 157531 TCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCG 157590
||||||||||| |||| ||| | || |||||| | |||||||| || |||||||| ||
Sbjct 7136 TCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCA 7077
Query 157591 TTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGG 157649
|| |||||| | ||||| | ||| |||||||| || || | ||| ||||||||| ||
Sbjct 7076 TTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 7018
>seq59
Length=339703
Score = 141 bits (156), Expect = 1e-28
Identities = 189/260 (73%), Gaps = 2/260 (1%)
Strand=Plus/Plus
Query 157504 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAG 157563
|| || |||| ||||||||| || | ||||||||||| |||| ||| | || |||||
Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368
Query 157564 GCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGT 157623
|| |||||||| || |||||||| || || |||||| | |||| ||||| ||||||||
Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428
Query 157624 GGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTG-TTCGTGAAAC 157682
|| || | ||| || |||||| || | | || || | | | ||| || | |||||
Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCT-CGAGTTTGATTAGGGAAAC 52487
Query 157683 AACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAA 157742
|| |||| || || || | ||||||| ||| |||||||| |||||||| || ||
Sbjct 52488 CACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAA 52547
Query 157743 CATCGTTGCTGCACACGGTT 157762
|| || ||| | || ||||
Sbjct 52548 TATTGTAGCTACTCATGGTT 52567
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 542631790303520
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