Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq5412 342 6e-89 seq25216 178 2e-39 seq8546 174 2e-38 seq29420 161 1e-34 seq59 156 5e-33 seq3927 131 2e-25 seq2610 129 7e-25 seq8630 104 3e-17 seq56071 89.7 6e-13 seq4835 82.4 9e-11 >seq5412 Length=31808 Score = 342 bits (378), Expect = 6e-89 Identities = 495/694 (71%), Gaps = 10/694 (1%) Strand=Plus/Minus Query 177604 GGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCC 177662 |||| ||||| |||||||||| || | ||| | ||||| ||| | || || | ||| Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225 Query 177663 TTCGTCGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTC 177722 ||| | |||||||| || || || || || || || |||||||| || ||| || || Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165 Query 177723 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTT 177782 | || || ||||| || ||||||||||| || | | ||| || || ||| | Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105 Query 177783 CACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCT 177842 ||||| ||||| || |||||||| ||||| ||||||| ||| | || || |||||||| Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045 Query 177843 TTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGG 177902 | | || | || ||||||||| | | || | | || ||||| ||||||||| Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985 Query 177903 GAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTT 177962 |||||| | |||||| ||||||||||| ||||| |||||| || || || |||||| Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925 Query 177963 GCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCCGATGC 178021 || | || | || || ||||| | |||| || | ||| |||| || || ||| Sbjct 14924 GCGACTGCTACTGCTGT-TTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGG 14866 Query 178022 TATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAA 178081 ||||||||| || || ||||||||||| |||| |||| |||||||||| || || ||||| Sbjct 14865 TATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAA 14806 Query 178082 TATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTT 178141 |||||||||||||| || |||||| | || || ||||| ||||||| || | || || Sbjct 14805 CATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATT 14746 Query 178142 CTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGA 178201 | | |||||| | | || || || | || | || || ||||||| ||| Sbjct 14745 C------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGA 14692 Query 178202 GTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGC 178261 || || | ||||||| | | || ||||| ||||| || ||||| ||||| || || Sbjct 14691 ATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGC 14632 Query 178262 CCATGGTTACTTCGGTCGTTTGATCTTCCAATAT 178295 |||||||| || || || || |||||||||||| Sbjct 14631 TCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598 >seq25216 Length=8180 Score = 178 bits (196), Expect = 2e-39 Identities = 183/237 (77%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 177921 GGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTC 177980 ||||||||||| ||||| | |||| || || || |||||||| || || | || || Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGT- 7195 Query 177981 TTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTC 178039 ||||| | |||| || | |||||||| || || |||| ||||||||| || || || Sbjct 7194 TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTC 7135 Query 178040 TGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACCCGTT 178099 ||||||||| |||| |||| |||||||||| | || ||||| |||||||||||||| || Sbjct 7134 TGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATT 7075 Query 178100 CCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 178156 |||||| | || || | ||| |||||||| || || || ||| |||||||||||| Sbjct 7074 TCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 7018 >seq8546 Length=31398 Score = 174 bits (192), Expect = 2e-38 Identities = 306/444 (69%), Gaps = 5/444 (1%) Strand=Plus/Minus Query 178101 CACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGT 178160 |||||| | || || ||||| |||||||| || || | ||| || ||||||||| | Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 178161 CTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGTCCCAGAACTATGGTTAC 178220 | || || ||| | || | || || ||||||| | | ||| || | |||||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 178221 AAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGT 178280 | || || ||||| || ||||| | || || || || || |||||||| || || || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 178281 TTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCA 178340 || |||||||||||||| |||||| | || | ||| | || |||||| | | || Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965 Query 178341 TGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTTAACCTC 178400 ||||||||||| || || ||||| || | | ||| | || |||||||||| ||| Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905 Query 178401 AATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGG 178460 || || ||||| |||||||| || | | || | ||||| ||||| || ||| Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT----AATTATTGG 12849 Query 178461 GCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAAAGAAATAGCACA 178520 || || | | ||||| || || || |||||||| ||||| ||| | ||| || || Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT-GCTCA 12790 Query 178521 TAACTTCCCGCTTGATCTTGCAGC 178544 |||||||| || || || || || Sbjct 12789 TAACTTCCATCTAGACCTAGCTGC 12766 >seq29420 Length=7120 Score = 161 bits (178), Expect = 1e-34 Identities = 254/361 (70%), Gaps = 2/361 (1%) Strand=Plus/Plus Query 177671 TGCTCCCCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGG 177730 |||||| || || || || || || || |||||||| || |||| || || | | || Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474 Query 177731 TAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTA 177790 ||||| || |||||||||| || | || |||| || || ||| | ||||| || Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534 Query 177791 TCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACT 177850 ||| || |||||||| ||||| ||||||| ||| | || || |||||||||| | || Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594 Query 177851 CGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTC 177910 || || |||||| | | || | | || ||||| ||||||||||||||| Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654 Query 177911 ATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGC 177970 | |||||| ||||||||||| ||||| |||||| || || | |||||||| || || Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714 Query 177971 ATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTC 178029 | | | ||||| | |||| || | |||||||| || || |||| |||||||| Sbjct 3715 TACTACTAT-TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTC 3773 Query 178030 T 178030 | Sbjct 3774 T 3774 >seq59 Length=339703 Score = 156 bits (172), Expect = 5e-33 Identities = 190/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 178011 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 178070 || || |||| ||||||||| || | ||||||||||| |||| |||| |||||||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 178071 GCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGT 178130 || || ||||| |||||||||||||| || |||||| | | || ||||| |||||||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 178131 GGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACG 178190 || || || ||| || ||||||||| | | || || || | | | || || Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 178191 ACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAAC 178250 ||||||| ||| || || | ||||||| ||| || ||||| ||||| || ||||| Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 178251 ATCGTCGCAGCCCATGGTT 178269 || || || | ||||||| Sbjct 52549 ATTGTAGCTACTCATGGTT 52567 >seq3927 Length=49767 Score = 131 bits (144), Expect = 2e-25 Identities = 180/248 (73%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 179226 ATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTT 179285 ||||| ||| || |||||||| || || || | ||||| || || ||| | ||||| || Sbjct 26006 ATGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATT 26065 Query 179286 TGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTA 179344 |||||| || || ||| || | | || ||||| ||||| || || || |||||| | Sbjct 26066 TGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATAGCATTATTTGGTCCAA 26124 Query 179345 TTGCCGTATTCGTTAGTGTATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTG 179404 ||||| | || ||| || ||||| || || ||||| || || || |||||||||||| Sbjct 26125 TTGCCATTTTTGTTTCGGTGTTTCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTG 26184 Query 179405 CGCCATCGTTTGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACA 179464 |||| |||||||| || | || || ||||| | || || || ||||| || || | Sbjct 26185 CGCCTAGTTTTGGTGTAGCATCTAT-ATTCGATTCATCCTCTTTTTTCAAGGGTTTCATA 26243 Query 179465 ACTGGACA 179472 | |||||| Sbjct 26244 ATTGGACA 26251 >seq2610 Length=55653 Score = 129 bits (142), Expect = 7e-25 Identities = 171/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 138527 CTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCT 138586 |||||||| |||||| | || | ||||| | || || | |||||||| ||||| | Sbjct 39267 CTGATGATGTATACATCTTGGACTCAGCTGAGAATGCTGGCTTGGATCTTCCATACTCGT 39326 Query 138587 GTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGT 138646 | || |||||||| ||||| ||||||||||| || | || ||| | || || |||| Sbjct 39327 GCCGAGCTGGTGCTTGTTCAACCTGTGCTGGGAAGCTGATTTCTGGATCAGTCGACCAGT 39386 Query 138647 CTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCA-GGATTTATCATGACTTGCGTA 138705 | ||| ||| ||||||||||||||||||||| | || || | | |||||||||| Sbjct 39387 CAGACGGGTCCTTCCTTGATGATGACCAAATT-AATCAGGGCTACGTACTGACTTGCGTC 39445 Query 138706 GCATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACT 138760 || ||||| || |||||| | ||| | ||| | ||||| | ||||| |||| Sbjct 39446 GCGTACCCTACCGGAGATTGTGTGATTCATACTCACAAAGAAGGTGAACTCTACT 39500 Score = 89.7 bits (98), Expect = 6e-13 Identities = 163/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 138529 GATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGT 138588 ||||| ||||||||||||||| || || ||||| ||| | |||||||| || || || Sbjct 41006 GATGACATGTACATCCTTGATGCAGCCGAGGAAGCGGGTTTGGATCTTCCGTATTCGTGC 41065 Query 138589 CGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCT 138648 | ||||| |||| ||||| |||||||| | | ||| || | || |||||||| Sbjct 41066 AGGGCTGGATCATGCTCTACTTGTGCTGGGATCATGGTTTCGGGTTCAGTTGATCAGTCA 41125 Query 138649 GACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATT-TATCATGACTTGCGTAGC 138707 || || || |||||||| || || | || || ||| || || |||| || || | Sbjct 41126 GATGGCTCGTTTCTTGATGAGGAACAGA-TGGAGAAGGGTTACCTCCTGACCTGTGTTTC 41184 Query 138708 ATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACTGAT 138763 | || || || |||||| | || | || | || || || | ||| | ||||| Sbjct 41185 GAAGCCAACCTCGGATTGTGTCATCCATACCCATAAGGAAGAGGCACTCTTCTGAT 41240 >seq8630 Length=23577 Score = 104 bits (114), Expect = 3e-17 Identities = 118/157 (75%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 178191 ACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAAC 178250 ||| ||| ||| ||| || | |||||||| || || ||||| || ||||| || || Sbjct 7473 ACATAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAAT 7532 Query 178251 ATCGT-CGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAACAA 178309 ||||| ||| || |||||||| || ||||| || |||||||||||||| |||||||| Sbjct 7533 ATCGTACGCTGCTCATGGTTATTTTGGTCGATTCATCTTCCAATATGCTAGTTTCAACAA 7592 Query 178310 CTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCT 178346 || ||||| | || ||||| | || || |||||| Sbjct 7593 TTCTCGTTCTTTACATTTCTTATTAGCCGCTTGGCCT 7629 >seq56071 Length=1723 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138537 GTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGG 138596 ||||||||||||||| || || ||||| ||| | |||||||| || || || | ||||| Sbjct 1721 GTACATCCTTGATGCAGCCGAGGAAGCGGGTTTGGATCTTCCGTATTCGTGCAGGGCTGG 1662 Query 138597 TGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTC 138656 |||| || || |||||||| | | ||| || | || |||||||| || || Sbjct 1661 ATCATGCTCCACTTGTGCTGGGATCATGGTTTCGGGTTCAGTTGATCAGTCAGATGGCTC 1602 Query 138657 TTTCCTTGATGATGACCAAATTGCAGCAGGATT-TATCATGACTTGCGTAGCATACCCCA 138715 || |||||||| || || | || || ||| || | || |||| || || | | || | Sbjct 1601 GTTTCTTGATGAGGAACAGA-TGGAGAAGGGTTATCTCCTGACCTGTGTTTCGAAGCCAA 1543 Query 138716 CATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACTGAT 138763 | || |||||| | || | || | || || || | ||| | ||||| Sbjct 1542 CCTCGGATTGTGTCATCCATACCCATAAGGAAGAGGCACTCTTCTGAT 1495 >seq4835 Length=43218 Score = 82.4 bits (90), Expect = 9e-11 Identities = 100/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 178215 GGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTC 178274 ||||||| || || ||||| || ||||| || || ||||| || || |||||||| || Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118 Query 178275 GGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTC----ACTGCACTTCTT 178330 || | || |||||||||||||| |||||||| || ||||| | | || ||||| Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAATTACATTTCTT 9178 Query 178331 CCTCGCAGCATGGCCT 178346 | || || |||||| Sbjct 9179 ATTAGCCGCTTGGCCT 9194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602732787841040