Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq87 86.0 6e-12 seq9434 84.2 2e-11 >seq87 Length=177581 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || ||||| | || |||||||| || ||||| ||||| Sbjct 55123 CCACCACGAAGACGGAGCACCAAATGCAGGGTTGATTCTTTCTGGATGTTATAATCAGCA 55182 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||||||||| || |||||| |||||| | ||||| || ||||| Sbjct 55183 AGGGTCCTTCCATCTTCGAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGAGGA 55242 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || || || || ||| || ||| | | || | ||||| | | || ||| Sbjct 55243 ATTCCCTCCTTATCTTGAATCTTAGCTTTGACGTTGTCAATGGTGTCAGAGCTCTCAACT 55302 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | |||||||| ||||| || || || || || ||||| Sbjct 55303 TCAAGAGTAATAGTCTTGCCAGTCAAAGTCTTCACAAAGATCTGCAT 55349 >seq9434 Length=50679 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 137243 || ||||| | ||| | || | |||| || || || || || ||||| ||||| ||| Sbjct 44711 CCACCTCGGAGACGAAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCAGCT 44770 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| || || ||||| || |||||| |||||||||| ||||| || ||||| Sbjct 44771 -AGAGTGCGGCCATCCTCCAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 44829 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| |||||| || | | || | || || | | ||| || Sbjct 44830 AATCCCTTCCTTGTCCTGAATTTTAGCCTTAACATTGTCGATTGTATCAGAGCTTTCAAC 44889 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || || || |||||||| || || ||||||||||| Sbjct 44890 CTCCAAGGTGATGGTTTTTCCAGTCAATGTCTTCACAAATATTTGCAT 44937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 486177040960800