Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq4197 93.3 1e-13
seq510 89.7 1e-12
>seq4197
Length=36674
Score = 93.3 bits (102), Expect = 1e-13
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923
|| |||||||| || ||||||||||| ||||| || || ||||| || || ||||||
Sbjct 23565 GTTGCTTTTGCCTGCGTTGAAGGTATCTTCTTCTCTGGAAGCTTCTGCGCGATATTTTGG 23506
Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983
|| || ||||| ||| ||||||||||||| | || || || | || ||||| | ||
Sbjct 23505 CTAAAAAAGCGAGGACTGATGCCTGGACTAACCTTCTCGAACGAGTTGATCTCCCGCGAC 23446
Query 131984 GAAGCATTGCA 131994
|||| |||||
Sbjct 23445 GAAGGCTTGCA 23435
>seq510
Length=137600
Score = 89.7 bits (98), Expect = 1e-12
Identities = 144/202 (71%), Gaps = 4/202 (2%)
Strand=Plus/Minus
Query 304934 ATGCAGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAAC-GCATTAAAGG 304992
|| |||||| | || |||||||||| ||| |||| ||| | || | | |||| |
Sbjct 127003 ATTCAGGCAACACAGCGATCTGGCAGGCCTATAAAATCAATTTG-CAGCAGGCTTAAGGC 126945
Query 304993 TAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAG 305052
|| || |||||||| ||||| |||||||||||||||||||| || ||| ||| | |
Sbjct 126944 CAAGGAAGGTCGTATACGAGGCAATCTAATGGGAAAACGTGTGGACTTTTCTGCTCGTAC 126885
Query 305053 TGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGA-AATTG 305111
|| ||||| ||||| || ||||| || || | | ||||| || || || || |
Sbjct 126884 AGTCATCACGCCTGACCCTACAATTAACATTGATCAGCTGGGAGTGCC-ATGGAGTATAG 126826
Query 305112 CTTTAAAACTAACATTTCCAGA 305133
| || || || |||| ||||||
Sbjct 126825 CATTGAATCTTACATATCCAGA 126804
Score = 87.8 bits (96), Expect = 4e-12
Identities = 114/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389
|| || |||||| | || || || ||||| |||||||| |||| ||| | | | |||
Sbjct 126442 GTACTTTTCAATCGACAGCCCAGTCTTCATAAGATGTCTATTATGGGTCACAGAATAAAA 126383
Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449
| | || | |||||| ||||| ||| | | | | | ||||||||||| ||
Sbjct 126382 ATCATGCCTTATTCGACATTCCGATTGAATTTGTCGGTTACTTCTCCTTATAATGCTGAC 126323
Query 305450 TTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487
|| ||||||||||||||||| |||||||| ||||| ||
Sbjct 126322 TTCGATGGAGATGAAATGAACATGCATGTTCCTCAGTC 126285
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1180919030519834
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |