Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4197 93.3 1e-13 seq510 89.7 1e-12 >seq4197 Length=36674 Score = 93.3 bits (102), Expect = 1e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 || |||||||| || ||||||||||| ||||| || || ||||| || || |||||| Sbjct 23565 GTTGCTTTTGCCTGCGTTGAAGGTATCTTCTTCTCTGGAAGCTTCTGCGCGATATTTTGG 23506 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 || || ||||| ||| ||||||||||||| | || || || | || ||||| | || Sbjct 23505 CTAAAAAAGCGAGGACTGATGCCTGGACTAACCTTCTCGAACGAGTTGATCTCCCGCGAC 23446 Query 131984 GAAGCATTGCA 131994 |||| ||||| Sbjct 23445 GAAGGCTTGCA 23435 >seq510 Length=137600 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 304934 ATGCAGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAAC-GCATTAAAGG 304992 || |||||| | || |||||||||| ||| |||| ||| | || | | |||| | Sbjct 127003 ATTCAGGCAACACAGCGATCTGGCAGGCCTATAAAATCAATTTG-CAGCAGGCTTAAGGC 126945 Query 304993 TAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAG 305052 || || |||||||| ||||| |||||||||||||||||||| || ||| ||| | | Sbjct 126944 CAAGGAAGGTCGTATACGAGGCAATCTAATGGGAAAACGTGTGGACTTTTCTGCTCGTAC 126885 Query 305053 TGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGA-AATTG 305111 || ||||| ||||| || ||||| || || | | ||||| || || || || | Sbjct 126884 AGTCATCACGCCTGACCCTACAATTAACATTGATCAGCTGGGAGTGCC-ATGGAGTATAG 126826 Query 305112 CTTTAAAACTAACATTTCCAGA 305133 | || || || |||| |||||| Sbjct 126825 CATTGAATCTTACATATCCAGA 126804 Score = 87.8 bits (96), Expect = 4e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 || || |||||| | || || || ||||| |||||||| |||| ||| | | | ||| Sbjct 126442 GTACTTTTCAATCGACAGCCCAGTCTTCATAAGATGTCTATTATGGGTCACAGAATAAAA 126383 Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449 | | || | |||||| ||||| ||| | | | | | ||||||||||| || Sbjct 126382 ATCATGCCTTATTCGACATTCCGATTGAATTTGTCGGTTACTTCTCCTTATAATGCTGAC 126323 Query 305450 TTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 || ||||||||||||||||| |||||||| ||||| || Sbjct 126322 TTCGATGGAGATGAAATGAACATGCATGTTCCTCAGTC 126285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180919030519834